NO03G03810.1, NO03G03810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03810.1
Unique NameNO03G03810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2893
Alignment locationchr3:1121070..1124133 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1121070..1124133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03810.1 vs.
Match: EWM29822.1 (protein phosphatase 2c containing protein [Nannochloropsis gaditana])

HSP 1 Score: 603.2 bits (1554), Expect = 8.000e-169
Identity = 310/452 (68.58%), Postives = 354/452 (78.32%), Query Frame = 0 
Query:  113 RISSNSEADDEETFRQATTAAEVEANGGEEEAAYQRQQAAAAAANDNNNYYDD--------------DSRRTSPPLKGFFGADATEE-EDINLSAAIAAAPLPANDATFRRRRLTFAMQGNIAPHTPLSQIQQRIFRSLEIGDVPKVPLPFREGQVGTFSCHGIEPSYLDTRPFIAKINQDRGVCVYPYVGHERMALFCVFDGHGEQGDKVSEFCMYELPRTLEAHPSLLEGEGDVTRAFKETFLGVDEKLRRNPNIDPFYSGTTAVVCLVKEGRLWVANAGDSRCTLASIDPKGSGRLLAQDLSIDQNPDSPMEMARILRSGGYVSPPPEPGLSARVWLDADFTQVGLAMARSIGDHAVKGVGVIAEPEVMTHELREGGRDQFLLLASDGVWEFISSQEAVDIVGGELERGLGVSEACQVLIERAAARWRDVEGDYRDDITALLIMLPLFK 550
            R S +++   E +   +   AE E NGGEEEAA++RQ A A+  N+++    D              D        KGFFG+ +  E E+ +L+    AAP PA++ TFRRRRLTFAMQGNI PHTPLSQ+QQR+FRSLEIGDVPKVPLPFREGQVGTFSCHGIEPSYLDTRPF+AKINQDRG+CVYP+ GHERMALF VFDGHGEQGDKVSEFCMYE+PR LEAH SL  G+ ++    KE+FL VD +L     ID F+SGTTAV CLVK  RLWVANAGDSRCTLA+ DP G+ RLLA+DLS DQNPDSP EMARI+++GGYVSP PEPGLSARVWLD ++TQVGLAMARSIGD AVKGVGV+AEPEV+ + L E G D+FLLLASDGVWEFISSQEAVDIV   LE+  GVS ACQVLIE+AA RWRDVEGDYRDDITALLIMLPLFK
Sbjct:   11 RASVSTDKSLEGSEEVSGVLAEAEENGGEEEAAFRRQYAEASVRNEDSAPDKDVCEEERAIGSAKGSDRSVAQKGFKGFFGSQSVAEGEEDDLAFPAVAAP-PASE-TFRRRRLTFAMQGNIPPHTPLSQVQQRVFRSLEIGDVPKVPLPFREGQVGTFSCHGIEPSYLDTRPFVAKINQDRGICVYPFAGHERMALFAVFDGHGEQGDKVSEFCMYEIPRALEAHSSLKGGDDNMIHTLKESFLTVDSRLNLEVGIDAFFSGTTAVACLVKGKRLWVANAGDSRCTLATADPAGTKRLLARDLSTDQNPDSPGEMARIIKNGGYVSPSPEPGLSARVWLDPEYTQVGLAMARSIGDRAVKGVGVVAEPEVVEYSLAEDGSDKFLLLASDGVWEFISSQEAVDIVNAHLEK--GVSAACQVLIEQAAGRWRDVEGDYRDDITALLIMLPLFK 458
The following BLAST results are available for this feature:
BLAST of NO03G03810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29822.18.000e-16968.58protein phosphatase 2c containing protein [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03810NO03G03810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03810.1NO03G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03810.1.cds1NO03G03810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03810.1.cds2NO03G03810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03810.1 ID=NO03G03810.1|Name=NO03G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2893bp
GGTTGGATTGTTCGGATTGTTCTGGGATGATAGATCGCAGGTTCTATTGG
TGGGGATGCGGGGGTTGGGAGGGGAAAGGGAGAAGCTGGGAGGGCTGCTA
TTTTTCGATCTGACACCAAATCTTTATGAGCTTAATTGGGGGTACACATT
CCTAGTTCTTATATCTCCACTCATTCAGTCCTTCCATCGTGTCTGTGCAT
CGGCCACACACGGCGCTCCGATTGGCCCATGTTCAACTAGTGGTCTTCAT
TTAATGGCCTTCTGTCGCACGCGCCGCACTGGCTAGATGACAAGTATCAG
CTTACCAAAATGAATCAATAAGTAGATTTATTTCTTTGGTATTTGTGTCT
GCAGTTGCTAGGCTTGCTATGCGCACATATACCTCTCCCACACCCTCGTG
CAAATGGCCTTATCAAAGGAACAAACGTTCAGCGACAGCGTCGGCCCTCG
TCGGCCCTCAATCTGGGTCATCCCTCGTCCACTGCCTCCCTACAAGCCCC
AGATAACACCGTTTGTATCTCTCGCCGTTCCCTCCTCTTAACCCCTTTCC
TCCAAATAGGCCTTGCGTTCTCGCGCATTGCCTTTGTGCTCCCTGACGAG
GCAGTTACAGCCAAATTCCTTGTTCCAATATCTCAACCCCCGCGAAAGAA
CAAGAAGGACGCACGCCACCATCCTTCCTCAACTCCACCCGAGGCACATC
CCCGAACTCGCGTCTTGTGAGCGAGGGTTCAGTCAGCCGGAGGTCGACCT
CCAGTCGTACTTGAGGTGGTTGGCGCGGCTGCGGACATCGTGGGACCACA
GCAAAAGGCGCACACTGCCTCCTCATCCGCGTCACACGCCAAACAGAGCA
CGGTCGCGGCGCCACAACATTGGCAACGCCTCAATATTGTCCCTTGCTAT
TGCAAAGGAGTACATGTAAATGGGTAGCAAGGTATCGTTGTCCACGGATG
GACCGGAGGTCATTCATGATGTTGCAGGCGCACTCAAGGAAGACGATTGG
CCGATGCCGCCTGCAGATGGGACACATGGGGCGACCAGCACCAAGGAGCA
CGGAGAGGCGGAGGTGAATGATTGGACGGAGATGTACTTACTTATCGAAG
GAATCGTTTGGACAGGGCCCTTTTATAAGGCACCATGACACTTTATTCAG
GACACTGATAAGGCACTATGATGGCACTGTGATCAGGATAGGGCACACGC
GAATGTTCATCAAAGGGATGATGCGCTTGTGCAGAGACAGGGAATGCCTT
GTGTTTCAGCCTTATTATCCTCACCCCTCTCTCTCCTTCCTTTCACCACA
TATACATACACACAGTTGGCAGAAAGTATTATTGGCACCACCGACATGAG
CGCCGCAACGGAAGCAGTGACACCGATTGATTTGTACGCCAAAAAGGCAT
CGCGGACCGAAAGCACAACCGCGCCCCTGGCCGCTGAAGAATTTGACTGC
GAGGACGGAGAAGAGGTGCCTGTCACCCATAGCTCCGAGACCCCCGTCGT
CCTCCCCGCAGCCTACCACGCCACTCATCACTCCAACAACATGGAAATCA
ACGGCGCGACCCCCTTCCACCCATCCCGTCGTATCTCGAGCAACAGCGAG
GCTGACGACGAGGAGACCTTCAGGCAAGCAACAACAGCCGCCGAAGTTGA
GGCAAATGGCGGGGAGGAAGAAGCAGCTTACCAGCGTCAGCAAGCGGCGG
CTGCAGCGGCGAACGACAACAACAACTACTATGACGACGACAGCCGTAGG
ACGTCCCCTCCTCTCAAAGGTTTTTTTGGTGCAGATGCCACTGAGGAGGA
AGACATCAACCTGAGTGCGGCTATTGCTGCTGCCCCTCTTCCCGCAAACG
ACGCCACGTTTCGCCGTCGCCGTTTGACCTTTGCCATGCAAGGAAATATT
GCGCCTCACACCCCCCTGAGCCAGATCCAGCAGCGCATATTTCGTTCTTT
AGAAATCGGGGACGTGCCGAAGGTGCCACTTCCCTTTCGGGAAGGTCAGG
TGGGTACCTTTTCGTGTCACGGCATTGAACCGTCTTATCTTGACACGCGG
CCGTTCATCGCTAAGATCAACCAGGACCGAGGGGTGTGTGTTTACCCTTA
TGTGGGCCATGAGCGGATGGCATTGTTTTGTGTGTTTGACGGGCACGGGG
AGCAAGGGGACAAGGTGTCAGAATTTTGTATGTATGAGTTGCCGCGGACA
TTGGAAGCGCATCCTTCCCTCTTGGAAGGAGAGGGGGATGTAACGAGGGC
GTTCAAGGAGACGTTTTTGGGGGTGGATGAGAAGTTGAGGAGGAATCCGA
ATATCGATCCTTTCTACAGTGGAACGACTGCCGTGGTGTGTTTGGTGAAG
GAGGGGAGATTGTGGGTGGCCAATGCGGGGGATTCTCGGTGCACTCTCGC
CTCGATTGACCCGAAGGGAAGCGGGAGGCTCTTGGCGCAGGATTTATCGA
TTGATCAAAACCCGGACTCGCCCATGGAGATGGCGAGGATCTTGAGGAGT
GGGGGCTATGTGAGCCCGCCGCCGGAGCCCGGGTTGTCGGCACGGGTGTG
GTTGGACGCGGATTTTACTCAGGTGGGTTTGGCGATGGCGCGAAGCATTG
GTGACCACGCGGTTAAGGGGGTGGGGGTTATTGCAGAGCCGGAGGTGATG
ACGCACGAGTTGAGGGAGGGGGGGAGGGATCAATTTTTGCTTTTGGCGAG
TGATGGGGTGTGGGAGTTCATCAGCTCACAGGAGGCGGTTGATATTGTGG
GGGGGGAGCTGGAGAGGGGGTTGGGGGTATCCGAGGCTTGTCAGGTCCTG
ATTGAGCGGGCGGCGGCGAGGTGGAGGGATGTGGAGGGCGATTACAGAGA
CGATATCACGGCCTTGTTGATTATGTTGCCGCTTTTCAAGTAG
back to top

protein sequence of NO03G03810.1

>NO03G03810.1-protein ID=NO03G03810.1-protein|Name=NO03G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MPCVSALLSSPLSLLPFTTYTYTQLAESIIGTTDMSAATEAVTPIDLYAK
KASRTESTTAPLAAEEFDCEDGEEVPVTHSSETPVVLPAAYHATHHSNNM
EINGATPFHPSRRISSNSEADDEETFRQATTAAEVEANGGEEEAAYQRQQ
AAAAAANDNNNYYDDDSRRTSPPLKGFFGADATEEEDINLSAAIAAAPLP
ANDATFRRRRLTFAMQGNIAPHTPLSQIQQRIFRSLEIGDVPKVPLPFRE
GQVGTFSCHGIEPSYLDTRPFIAKINQDRGVCVYPYVGHERMALFCVFDG
HGEQGDKVSEFCMYELPRTLEAHPSLLEGEGDVTRAFKETFLGVDEKLRR
NPNIDPFYSGTTAVVCLVKEGRLWVANAGDSRCTLASIDPKGSGRLLAQD
LSIDQNPDSPMEMARILRSGGYVSPPPEPGLSARVWLDADFTQVGLAMAR
SIGDHAVKGVGVIAEPEVMTHELREGGRDQFLLLASDGVWEFISSQEAVD
IVGGELERGLGVSEACQVLIERAAARWRDVEGDYRDDITALLIMLPLFK*
back to top

mRNA from alignment at chr3:1121070..1124133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03810.1 ID=NO03G03810.1|Name=NO03G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=3064bp|location=Sequence derived from alignment at chr3:1121070..1124133+ (Nannochloropsis oceanica)
GGTTGGATTGTTCGGATTGTTCTGGGATGATAGATCGCAGGTTCTATTGG
TGGGGATGCGGGGGTTGGGAGGGGAAAGGGAGAAGCTGGGAGGGCTGCTA
TTTTTCGATCTGACACCAAATCTTTATGAGCTTAATTGGGGGTACACATT
CCTAGTTCTTATATCTCCACTCATTCAGTCCTTCCATCGTGTCTGTGCAT
CGGCCACACACGGCGCTCCGATTGGCCCATGTTCAACTAGTGGTCTTCAT
TTAATGGCCTTCTGTCGCACGCGCCGCACTGGCTAGATGACAAGTATCAG
CTTACCAAAATGAATCAATAAGTAGATTTATTTCTTTGGTATTTGTGTCT
GCAGTTGCTAGGCTTGCTATGCGCACATATACCTCTCCCACACCCTCGTG
CAAATGGCCTTATCAAAGGAACAAACGTTCAGCGACAGCGTCGGCCCTCG
TCGGCCCTCAATCTGGGTCATCCCTCGTCCACTGCCTCCCTACAAGCCCC
AGATAACACCGTTTGTATCTCTCGCCGTTCCCTCCTCTTAACCCCTTTCC
TCCAAATAGGCCTTGCGTTCTCGCGCATTGCCTTTGTGCTCCCTGACGAG
GCAGTTACAGCCAAATTCCTTGTTCCAATATCTCAACCCCCGCGAAAGAA
CAAGAAGGACGCACGCCACCATCCTTCCTCAACTCCACCCGAGGCACATC
CCCGAACTCGCGTCTTGTGAGCGAGGGTTCAGTCAGCCGGAGGTCGACCT
CCAGTCGTACTTGAGGTGGTTGGCGCGGCTGCGGACATCGTGGGACCACA
GCAAAAGGCGCACACTGCCTCCTCATCCGCGTCACACGCCAAACAGAGCA
CGGTCGCGGCGCCACAACATTGGCAACGCCTCAATATTGTCCCTTGCTAT
TGCAAAGGAGTACATGTAAATGGGTAGCAAGGTATCGTTGTCCACGGATG
GACCGGAGGTCATTCATGATGTTGCAGGCGCACTCAAGGAAGACGATTGG
CCGATGCCGCCTGCAGATGGGACACATGGGGCGACCAGCACCAAGGAGCA
CGGAGAGGCGGAGGTGAATGATTGGACGGAGATGTACTTACTTATCGAAG
GAATCGTTTGGACAGGGCCCTTTTATAAGGCACCATGACACTTTATTCAG
GACACTGATAAGGCACTATGATGGCACTGTGATCAGGATAGGGCACACGC
GAATGTTCATCAAAGGGATGATGCGCTTGTGCAGAGACAGGGAATGCCTT
GTGTTTCAGCCTTATTATCCTCACCCCTCTCTCTCCTTCCTTTCACCACA
TATACATACACACAGTTGGCAGAAAGTATTATTGGCACCACCGACATGAG
CGCCGCAACGGAAGCAGTGACACCGATTGATTTGTACGCCAAAAAGGCAT
CGCGGACGTAAGTTCCACGTAAAGTGGGGGTGGGGATAAAGATACACGTG
GTGCATAAGAATCCAAGCATGGCTGCTTGTACTAATCGCGCAGAATCCAC
TTAACTTTCTGGAAAGTCTTTCAATTTCATCATTAGCCCTTTTTCATTTC
CCATCCTCGACGTTTTTACCCACATCAGCGAAAGCACAACCGCGCCCCTG
GCCGCTGAAGAATTTGACTGCGAGGACGGAGAAGAGGTGCCTGTCACCCA
TAGCTCCGAGACCCCCGTCGTCCTCCCCGCAGCCTACCACGCCACTCATC
ACTCCAACAACATGGAAATCAACGGCGCGACCCCCTTCCACCCATCCCGT
CGTATCTCGAGCAACAGCGAGGCTGACGACGAGGAGACCTTCAGGCAAGC
AACAACAGCCGCCGAAGTTGAGGCAAATGGCGGGGAGGAAGAAGCAGCTT
ACCAGCGTCAGCAAGCGGCGGCTGCAGCGGCGAACGACAACAACAACTAC
TATGACGACGACAGCCGTAGGACGTCCCCTCCTCTCAAAGGTTTTTTTGG
TGCAGATGCCACTGAGGAGGAAGACATCAACCTGAGTGCGGCTATTGCTG
CTGCCCCTCTTCCCGCAAACGACGCCACGTTTCGCCGTCGCCGTTTGACC
TTTGCCATGCAAGGAAATATTGCGCCTCACACCCCCCTGAGCCAGATCCA
GCAGCGCATATTTCGTTCTTTAGAAATCGGGGACGTGCCGAAGGTGCCAC
TTCCCTTTCGGGAAGGTCAGGTGGGTACCTTTTCGTGTCACGGCATTGAA
CCGTCTTATCTTGACACGCGGCCGTTCATCGCTAAGATCAACCAGGACCG
AGGGGTGTGTGTTTACCCTTATGTGGGCCATGAGCGGATGGCATTGTTTT
GTGTGTTTGACGGGCACGGGGAGCAAGGGGACAAGGTGTCAGAATTTTGT
ATGTATGAGTTGCCGCGGACATTGGAAGCGCATCCTTCCCTCTTGGAAGG
AGAGGGGGATGTAACGAGGGCGTTCAAGGAGACGTTTTTGGGGGTGGATG
AGAAGTTGAGGAGGAATCCGAATATCGATCCTTTCTACAGTGGAACGACT
GCCGTGGTGTGTTTGGTGAAGGAGGGGAGATTGTGGGTGGCCAATGCGGG
GGATTCTCGGTGCACTCTCGCCTCGATTGACCCGAAGGGAAGCGGGAGGC
TCTTGGCGCAGGATTTATCGATTGATCAAAACCCGGACTCGCCCATGGAG
ATGGCGAGGATCTTGAGGAGTGGGGGCTATGTGAGCCCGCCGCCGGAGCC
CGGGTTGTCGGCACGGGTGTGGTTGGACGCGGATTTTACTCAGGTGGGTT
TGGCGATGGCGCGAAGCATTGGTGACCACGCGGTTAAGGGGGTGGGGGTT
ATTGCAGAGCCGGAGGTGATGACGCACGAGTTGAGGGAGGGGGGGAGGGA
TCAATTTTTGCTTTTGGCGAGTGATGGGGTGTGGGAGTTCATCAGCTCAC
AGGAGGCGGTTGATATTGTGGGGGGGGAGCTGGAGAGGGGGTTGGGGGTA
TCCGAGGCTTGTCAGGTCCTGATTGAGCGGGCGGCGGCGAGGTGGAGGGA
TGTGGAGGGCGATTACAGAGACGATATCACGGCCTTGTTGATTATGTTGC
CGCTTTTCAAGTAG
back to top

Coding sequence (CDS) from alignment at chr3:1121070..1124133+

>NO03G03810.1 ID=NO03G03810.1|Name=NO03G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr3:1121070..1124133+ (Nannochloropsis oceanica)
ATGCCTTGTGTTTCAGCCTTATTATCCTCACCCCTCTCTCTCCTTCCTTT
CACCACATATACATACACACAGTTGGCAGAAAGTATTATTGGCACCACCG
ACATGAGCGCCGCAACGGAAGCAGTGACACCGATTGATTTGTACGCCAAA
AAGGCATCGCGGACCGAAAGCACAACCGCGCCCCTGGCCGCTGAAGAATT
TGACTGCGAGGACGGAGAAGAGGTGCCTGTCACCCATAGCTCCGAGACCC
CCGTCGTCCTCCCCGCAGCCTACCACGCCACTCATCACTCCAACAACATG
GAAATCAACGGCGCGACCCCCTTCCACCCATCCCGTCGTATCTCGAGCAA
CAGCGAGGCTGACGACGAGGAGACCTTCAGGCAAGCAACAACAGCCGCCG
AAGTTGAGGCAAATGGCGGGGAGGAAGAAGCAGCTTACCAGCGTCAGCAA
GCGGCGGCTGCAGCGGCGAACGACAACAACAACTACTATGACGACGACAG
CCGTAGGACGTCCCCTCCTCTCAAAGGTTTTTTTGGTGCAGATGCCACTG
AGGAGGAAGACATCAACCTGAGTGCGGCTATTGCTGCTGCCCCTCTTCCC
GCAAACGACGCCACGTTTCGCCGTCGCCGTTTGACCTTTGCCATGCAAGG
AAATATTGCGCCTCACACCCCCCTGAGCCAGATCCAGCAGCGCATATTTC
GTTCTTTAGAAATCGGGGACGTGCCGAAGGTGCCACTTCCCTTTCGGGAA
GGTCAGGTGGGTACCTTTTCGTGTCACGGCATTGAACCGTCTTATCTTGA
CACGCGGCCGTTCATCGCTAAGATCAACCAGGACCGAGGGGTGTGTGTTT
ACCCTTATGTGGGCCATGAGCGGATGGCATTGTTTTGTGTGTTTGACGGG
CACGGGGAGCAAGGGGACAAGGTGTCAGAATTTTGTATGTATGAGTTGCC
GCGGACATTGGAAGCGCATCCTTCCCTCTTGGAAGGAGAGGGGGATGTAA
CGAGGGCGTTCAAGGAGACGTTTTTGGGGGTGGATGAGAAGTTGAGGAGG
AATCCGAATATCGATCCTTTCTACAGTGGAACGACTGCCGTGGTGTGTTT
GGTGAAGGAGGGGAGATTGTGGGTGGCCAATGCGGGGGATTCTCGGTGCA
CTCTCGCCTCGATTGACCCGAAGGGAAGCGGGAGGCTCTTGGCGCAGGAT
TTATCGATTGATCAAAACCCGGACTCGCCCATGGAGATGGCGAGGATCTT
GAGGAGTGGGGGCTATGTGAGCCCGCCGCCGGAGCCCGGGTTGTCGGCAC
GGGTGTGGTTGGACGCGGATTTTACTCAGGTGGGTTTGGCGATGGCGCGA
AGCATTGGTGACCACGCGGTTAAGGGGGTGGGGGTTATTGCAGAGCCGGA
GGTGATGACGCACGAGTTGAGGGAGGGGGGGAGGGATCAATTTTTGCTTT
TGGCGAGTGATGGGGTGTGGGAGTTCATCAGCTCACAGGAGGCGGTTGAT
ATTGTGGGGGGGGAGCTGGAGAGGGGGTTGGGGGTATCCGAGGCTTGTCA
GGTCCTGATTGAGCGGGCGGCGGCGAGGTGGAGGGATGTGGAGGGCGATT
ACAGAGACGATATCACGGCCTTGTTGATTATGTTGCCGCTTTTCAAGTAG
back to top
Synonyms
Publications