NO03G03720.1, NO03G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03720.1
Unique NameNO03G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr3:1101814..1102587 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1101814..1102587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03720.1 vs.
Match: EWM29857.1 (dna-binding horma domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 377.9 bits (969), Expect = 2.200e-101
Identity = 195/221 (88.24%), Postives = 204/221 (92.31%), Query Frame = 0 
Query:    3 MSAAAPPSPAGSMHAAAAADNSVITLRGSTDIVMEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAKERGLVDYLENVLTQLGQWLTSRNVQKLVVVVTGMESNAVLERWVFSVETAQEAATNPQGFQAQKSQKDITSEIAAIIRQITCSVSFMPLLSERCSFDLLVYTDKNVLVPATWEDSDPRLIQHAEEVRLRSVNTKVHKVDTMVAYRMEPAAQ 224
            MS A P +   S  AA AADNSVITLRGSTDIV+EFFEHAITCILYQRGIYPPEDFERKTKYGLALHVA+E GLV YL+NVL QL QWLTS NVQKLVVVVTGMES AVLERWVFSV+TAQEAATNPQG+QAQKSQK+ITSEIAAIIRQITCSVSFMPLL+ERCSFDLLVYTDK+VLVPATWEDSDPRLIQ AEEVRLRSVNTKVHKVDTMVAYRMEPA Q
Sbjct:    1 MSFAVPAASMSSTPAAPAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYRMEPAGQ 221
The following BLAST results are available for this feature:
BLAST of NO03G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29857.12.200e-10188.24dna-binding horma domain-containing protein [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03720NO03G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03720.1NO03G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03720.1.cds1NO03G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03720.1.cds2NO03G03720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03720.1 ID=NO03G03720.1|Name=NO03G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGTCTATGTCCGCCGCCGCCCCTCCCTCACCAGCGGGCAGCATGCACGC
CGCTGCGGCAGCCGATAACAGTGTGATCACCCTGCGGGGATCCACGGACA
TTGTGATGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGTACCAACGA
GGCATCTACCCCCCAGAAGACTTTGAACGCAAGACCAAGTACGGCCTCGC
CTTGCACGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGAGAACGTCC
TCACACAGCTCGGACAATGGCTGACATCTAGGAATGTACAGAAATTGGTG
GTGGTTGTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGTTGGGTATT
TAGCGTGGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGGTTTTCAAG
CACAGAAGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAATCATCCGG
CAGATTACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAAAGATGTTC
GTTTGATTTGTTGGTCTACACGGACAAAAACGTATTGGTCCCGGCCACAT
GGGAGGACTCCGACCCACGGCTGATACAGCATGCCGAGGAGGTGAGGCTG
CGGTCGGTGAATACAAAGGTACACAAGGTAGACACCATGGTGGCTTATCG
TATGGAGCCTGCGGCGCAGGATTAG
back to top

protein sequence of NO03G03720.1

>NO03G03720.1-protein ID=NO03G03720.1-protein|Name=NO03G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MSMSAAAPPSPAGSMHAAAAADNSVITLRGSTDIVMEFFEHAITCILYQR
GIYPPEDFERKTKYGLALHVAKERGLVDYLENVLTQLGQWLTSRNVQKLV
VVVTGMESNAVLERWVFSVETAQEAATNPQGFQAQKSQKDITSEIAAIIR
QITCSVSFMPLLSERCSFDLLVYTDKNVLVPATWEDSDPRLIQHAEEVRL
RSVNTKVHKVDTMVAYRMEPAAQD*
back to top

mRNA from alignment at chr3:1101814..1102587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03720.1 ID=NO03G03720.1|Name=NO03G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp|location=Sequence derived from alignment at chr3:1101814..1102587- (Nannochloropsis oceanica)
ATGTCTATGGTAAGGAGGCAGTGGCTATCTTGGTAGGGAATTTACGCGAA
CGATCGGGCACATTCTCATCGTCATCACTTCCTCTTCCTCCTCTCCATCC
TCCTCCAGTCCGCCGCCGCCCCTCCCTCACCAGCGGGCAGCATGCACGCC
GCTGCGGCAGCCGATAACAGTGTGATCACCCTGCGGGGATCCACGGACAT
TGTGATGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGTACCAACGAG
GCATCTACCCCCCAGAAGACTTTGAACGCAAGACCAAGTACGGCCTCGCC
TTGCACGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGAGAACGTCCT
CACACAGCTCGGACAATGGCTGACATCTAGGAATGTACAGAAATTGGTGG
TGGTTGTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGTTGGGTATTT
AGCGTGGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGGTTTTCAAGC
ACAGAAGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAATCATCCGGC
AGATTACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAAAGATGTTCG
TTTGATTTGTTGGTCTACACGGACAAAAACGTATTGGTCCCGGCCACATG
GGAGGACTCCGACCCACGGCTGATACAGCATGCCGAGGAGGTGAGGCTGC
GGTCGGTGAATACAAAGGTACACAAGGTAGACACCATGGTGGCTTATCGT
ATGGAGCCTGCGGCGCAGGATTAG
back to top

Coding sequence (CDS) from alignment at chr3:1101814..1102587-

>NO03G03720.1 ID=NO03G03720.1|Name=NO03G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr3:1101814..1102587- (Nannochloropsis oceanica)
ATGTCTATGTCCGCCGCCGCCCCTCCCTCACCAGCGGGCAGCATGCACGC
CGCTGCGGCAGCCGATAACAGTGTGATCACCCTGCGGGGATCCACGGACA
TTGTGATGGAGTTCTTCGAGCATGCCATCACGTGCATTTTGTACCAACGA
GGCATCTACCCCCCAGAAGACTTTGAACGCAAGACCAAGTACGGCCTCGC
CTTGCACGTGGCCAAAGAAAGGGGCTTGGTGGACTATTTGGAGAACGTCC
TCACACAGCTCGGACAATGGCTGACATCTAGGAATGTACAGAAATTGGTG
GTGGTTGTGACGGGGATGGAGTCGAATGCCGTGCTTGAACGTTGGGTATT
TAGCGTGGAGACTGCACAGGAAGCAGCTACTAACCCCCAGGGTTTTCAAG
CACAGAAGTCCCAGAAGGATATCACAAGCGAGATTGCTGCAATCATCCGG
CAGATTACGTGCTCGGTGTCGTTCATGCCTCTGTTGTCCGAAAGATGTTC
GTTTGATTTGTTGGTCTACACGGACAAAAACGTATTGGTCCCGGCCACAT
GGGAGGACTCCGACCCACGGCTGATACAGCATGCCGAGGAGGTGAGGCTG
CGGTCGGTGAATACAAAGGTACACAAGGTAGACACCATGGTGGCTTATCG
TATGGAGCCTGCGGCGCAGGATTAG
back to top
Synonyms
Publications