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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1070086..1072470 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03610.1 vs.
Match: EWM29851.1 (Cyclin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 490.3 bits (1261), Expect = 1.000e-134 Identity = 356/736 (48.37%), Postives = 440/736 (59.78%), Query Frame = 0
Query: 5 ELSPAVPRPHKRVLVRSSSSGTRAPTSTFSIRPLHQHNHLHYHHRRSSKEAGTSSSGLFRRNGDRQLAALHFLSSIPMKNERAILEGTVSQQQQQQQQQQQQQIEGARGASAPDDGEEEDDEDLLLLDSPLVAAATIGGSNKENNNSYNEQAARYAIGNVLVPGKKLDGPPAYVVSVPESFRHKYQQSTAVIRQWERQVSDAGILEGRLFISSKRGYPLVVSSVIQFKPGLESEKRLRAKQVNERGAEAFDRPVPDWRGVRYCRLLHAEWAPCSAERDARDGGHHQHQTYGGGGGGEGEGGHDTGGVVLPCGVGNGAYDPAFLDDPALSHGRTRQLNIGGPGLGPVVFSTILFRNPKQLKDELNRQFREQHPSLPPSLTLSKIRRLKIQAAQGCC-ALGVELGTLALACVYFEKLCLQALVTKTNRRIAFATCLVLAYKFQEQGLQGDGGRENGWLGKKLGQRNVSAGSCSNVR------KSNT---------NLSLLLEWFDREWVVSKRQIFNAEFGVYFHLGFSLHVPAGEPQFHFVRLCRLVGVSPRIYLGEERLRAYLEAAAGVVPGVMAWRERND--GEDDGGEGGEGGGGGEEEDEDGLEDTMHGDRYHDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELGGSLWRQRQRRTAVSFLAQRRQGHDGTEEELREESVSL-MSKRESMEMVRSFAVEEEAEEEREKRKRRRPSWTMR 722
E++ A P KR L RS S GTR +S FS RP Q HY R+ SSGLFRRN DRQLAALHFLS+IPMK+E +L + + Q+ ++ G +++D D + VA+ S N + +R + + +PGK+L+G A+VVSVPES RHKYQ S AV+RQWER+V +AGIL+GRLFISS+RGYPLVV+SV+++KPG ESEKR RA+QVNERG EAF RPVPDWRGVRY LLHAE A CSAERD RDGG+ GG +G G P G +YDPA LDDPALSHGRTRQLN+GGPGLGPVVFS I FR PKQLK+ELN+QFRE+HP+LPPSLTLSKIRRLK QAA C LGVELGTLALACVYFEKLCL +LVTK+NRR+AFATCL+L+YKFQEQGL+G G NGW ++ + +GS + R KS + NLS LLEW DREW VSK+Q+ AEFGVY +L F+LHVPA E Q HF RLC+LVG +PR YLGE+R RAY E G R+ ++ G GGE G DG +T+ RY + +E + + E + R Q+ A+ + + E+LREES SL ++ E ++ + AE + RRRPSWT+R
Sbjct: 2 EMACANPANKKRTLARSKSGGTRTTSSAFSSRPAQQQ---HYRRVRA-----IPSSGLFRRNADRQLAALHFLSNIPMKSELQVL--NIVRPPHQENSHGRENYMALTG--------KKEDRD---MKPHKVASRANDSSTPVLENHFCR--SRDGVDSTSIPGKQLNGLDAFVVSVPESIRHKYQHSAAVVRQWERRVKNAGILDGRLFISSRRGYPLVVASVVEYKPGCESEKRWRARQVNERGGEAFHRPVPDWRGVRYGALLHAERAACSAERDVRDGGY-----LVACGGKDGVGAGAAPASQSPFGASGSSYDPASLDDPALSHGRTRQLNVGGPGLGPVVFSIIHFRKPKQLKEELNKQFRERHPTLPPSLTLSKIRRLKKQAAIACYEGLGVELGTLALACVYFEKLCLLSLVTKSNRRLAFATCLILSYKFQEQGLRGSTG--NGWQEERESKIMSVSGSFDSFRDPHLRQKSRSSITGGNNACNLSRLLEWIDREWCVSKKQVLEAEFGVYINLKFALHVPACEVQHHFARLCKLVGATPRDYLGEDRFRAYTEVVTGHNQHSHPRRQEDEVAGTTRRRVGGETGREKNANANDGCWNTVAEKRYTYTTKPQESISPGCQVPSQRHAASSEPPTD---------------------RAHQKDWAIQNVKCNFAKNQHKSEDLREESASLALTDFSRGEHIKKDMIGTRAEVKDGLPSRRRPSWTLR 686
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03610.1 ID=NO03G03610.1|Name=NO03G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp ATGGAGCTAAGGGAGTTGTCACCTGCGGTCCCGAGGCCTCATAAGCGGGT CCTTGTTCGAAGCAGCAGCAGCGGTACACGAGCTCCAACGTCCACATTCT CCATCCGCCCTCTTCATCAGCACAACCATCTGCACTATCATCATCGGAGG AGCAGCAAAGAGGCGGGGACAAGCTCGAGTGGCCTCTTTCGCAGGAATGG GGACCGGCAACTTGCAGCGCTACATTTTCTAAGTAGCATTCCCATGAAGA ATGAGAGGGCCATATTGGAGGGCACAGTATCGCAGCAGCAACAGCAGCAG CAGCAGCAGCAGCAGCAGCAAATAGAGGGCGCCCGGGGTGCGTCCGCACC CGACGACGGGGAAGAGGAAGATGACGAGGATCTCCTCCTACTTGATTCTC CCTTGGTTGCCGCCGCTACCATAGGTGGCAGCAATAAAGAAAACAACAAT AGTTACAACGAGCAGGCGGCCCGCTACGCAATTGGAAACGTCCTAGTACC TGGCAAAAAGCTCGATGGGCCTCCGGCCTACGTCGTCTCCGTCCCCGAAT CCTTCCGACACAAGTACCAGCAAAGCACCGCGGTAATCCGGCAATGGGAG CGCCAAGTGAGCGATGCCGGTATTTTGGAGGGGCGTTTATTTATCTCCTC GAAGCGGGGTTATCCCTTGGTAGTTTCCTCTGTGATCCAGTTTAAACCTG GCTTGGAGTCGGAGAAAAGACTTCGGGCCAAGCAAGTCAATGAAAGAGGG GCCGAGGCCTTTGATCGCCCTGTGCCTGACTGGCGTGGTGTGAGGTATTG CCGACTGTTGCATGCGGAGTGGGCCCCGTGTTCCGCCGAGAGAGATGCGC GGGATGGAGGGCATCACCAGCATCAGACGTATGGTGGTGGAGGGGGGGGG GAAGGGGAGGGAGGACACGATACAGGTGGTGTGGTGCTTCCTTGTGGAGT GGGGAATGGTGCATATGATCCTGCGTTTTTGGACGATCCGGCGTTGAGCC ATGGGAGGACACGACAGCTTAACATTGGTGGACCCGGGTTAGGTCCTGTG GTGTTTTCCACCATCCTATTTCGCAATCCCAAGCAGTTAAAGGATGAGTT AAATAGGCAATTCAGAGAGCAGCATCCCTCACTCCCTCCTTCCTTGACAT TGAGCAAGATAAGGAGGTTGAAAATACAGGCAGCGCAAGGATGTTGTGCA TTAGGTGTCGAGTTGGGGACACTGGCTTTGGCATGCGTTTATTTCGAAAA ATTGTGTTTGCAGGCCTTGGTGACCAAGACAAATCGGAGGATCGCTTTTG CGACGTGTCTTGTACTCGCTTACAAGTTTCAGGAGCAGGGGTTGCAGGGA GATGGAGGAAGGGAAAATGGGTGGTTGGGGAAGAAGCTTGGGCAGCGGAA TGTGAGTGCTGGAAGTTGTAGTAATGTGAGGAAAAGCAATACAAATTTGT CCTTGTTGCTAGAATGGTTTGACCGTGAATGGGTCGTGAGCAAGAGGCAA ATATTTAATGCGGAATTTGGGGTGTATTTTCACCTGGGATTCTCGTTACA TGTGCCGGCGGGGGAGCCGCAATTTCACTTCGTGCGGTTGTGCAGGTTGG TGGGCGTTTCCCCGAGAATCTATCTCGGGGAGGAGAGATTGAGGGCGTAT TTGGAAGCGGCGGCAGGGGTAGTGCCGGGGGTGATGGCATGGAGGGAGAG AAATGACGGGGAGGACGACGGAGGGGAGGGGGGCGAAGGCGGTGGTGGGG GGGAGGAGGAGGATGAGGATGGGCTGGAAGACACGATGCATGGGGATCGG TATCACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGTTGGGAGGGTCT TTGTGGCGGCAACGGCAACGACGGACGGCTGTAAGTTTTCTTGCCCAGAG ACGGCAGGGACATGATGGCACGGAGGAGGAATTGCGGGAGGAGAGCGTGT CGTTGATGTCAAAAAGAGAGTCTATGGAGATGGTACGAAGCTTCGCGGTG GAGGAGGAGGCGGAAGAGGAGAGGGAAAAGAGGAAACGTCGGCGGCCGTC GTGGACGATGCGGGGATGGAATCTTGTCCGACGCCAGCCGACTATGTAAA GGGATGATATAGTGGTGGTGAGTGTAAAAAAAGATCGATTACAATTACAA CATGGCAGGGCCTCCAATACCAGACACCAACAAGAAGGATGTGCGTCCCC CGTCCGTGACGACACACCATTTTAAGCCCTGCCGTAAAATTTTGACCGAA TTGTCAAAGAGGATGTACAGCTAAAAAAACGAAAG back to topprotein sequence of NO03G03610.1 >NO03G03610.1-protein ID=NO03G03610.1-protein|Name=NO03G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp MELRELSPAVPRPHKRVLVRSSSSGTRAPTSTFSIRPLHQHNHLHYHHRR SSKEAGTSSSGLFRRNGDRQLAALHFLSSIPMKNERAILEGTVSQQQQQQ QQQQQQQIEGARGASAPDDGEEEDDEDLLLLDSPLVAAATIGGSNKENNN SYNEQAARYAIGNVLVPGKKLDGPPAYVVSVPESFRHKYQQSTAVIRQWE RQVSDAGILEGRLFISSKRGYPLVVSSVIQFKPGLESEKRLRAKQVNERG AEAFDRPVPDWRGVRYCRLLHAEWAPCSAERDARDGGHHQHQTYGGGGGG EGEGGHDTGGVVLPCGVGNGAYDPAFLDDPALSHGRTRQLNIGGPGLGPV VFSTILFRNPKQLKDELNRQFREQHPSLPPSLTLSKIRRLKIQAAQGCCA LGVELGTLALACVYFEKLCLQALVTKTNRRIAFATCLVLAYKFQEQGLQG DGGRENGWLGKKLGQRNVSAGSCSNVRKSNTNLSLLLEWFDREWVVSKRQ IFNAEFGVYFHLGFSLHVPAGEPQFHFVRLCRLVGVSPRIYLGEERLRAY LEAAAGVVPGVMAWRERNDGEDDGGEGGEGGGGGEEEDEDGLEDTMHGDR YHDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELGGS LWRQRQRRTAVSFLAQRRQGHDGTEEELREESVSLMSKRESMEMVRSFAV EEEAEEEREKRKRRRPSWTMRGWNLVRRQPTM* back to topmRNA from alignment at chr3:1070086..1072470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03610.1 ID=NO03G03610.1|Name=NO03G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp|location=Sequence derived from alignment at chr3:1070086..1072470+ (Nannochloropsis oceanica) ATGGAGCTAAGGGAGTTGTCACCTGCGGTCCCGAGGCCTCATAAGCGGGT
CCTTGTTCGAAGCAGCAGCAGCGGTACACGAGCTCCAACGTCCACATTCT
CCATCCGCCCTCTTCATCAGCACAACCATCTGCACTATCATCATCGGAGG
AGCAGCAAAGAGGCGGGGACAAGCTCGAGTGGCCTCTTTCGCAGGAATGG
GGACCGGCAACTTGCAGCGCTACATTTTCTAAGTAGCATTCCCATGAAGA
ATGAGAGGGCCATATTGGAGGGCACAGTATCGCAGCAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAATAGAGGGCGCCCGGGGTGCGTCCGCACC
CGACGACGGGGAAGAGGAAGATGACGAGGATCTCCTCCTACTTGATTCTC
CCTTGGTTGCCGCCGCTACCATAGGTGGCAGCAATAAAGAAAACAACAAT
AGTTACAACGAGCAGGCGGCCCGCTACGCAATTGGAAACGTCCTAGTACC
TGGCAAAAAGCTCGATGGGCCTCCGGCCTACGTCGTCTCCGTCCCCGAAT
CCTTCCGACACAAGTACCAGCAAAGCACCGCGGTAATCCGGCAATGGGAG
CGCCAAGTGAGCGATGCCGGTATTTTGGAGGGGCGTTTATTTATCTCCTC
GAAGCGGGGTTATCCCTTGGTAGTTTCCTCTGTGATCCAGTTTAAACCTG
GCTTGGAGTCGGAGAAAAGACTTCGGGCCAAGCAAGTCAATGAAAGAGGG
GCCGAGGCCTTTGATCGCCCTGTGCCTGACTGGCGTGGTGTGAGGTATTG
CCGACTGTTGCATGCGGAGTGGGCCCCGTGTTCCGCCGAGAGAGATGCGC
GGGATGGAGGGCATCACCAGCATCAGACGTATGGTGGTGGAGGGGGGGGG
GAAGGGGAGGGAGGACACGATACAGGTGGTGTGGTGCTTCCTTGTGGAGT
GGGGAATGGTGCATATGATCCTGCGTTTTTGGACGATCCGGCGTTGAGCC
ATGGGAGGACACGACAGCTTAACATTGGTGGACCCGGGTTAGGTCCTGTG
GTGTTTTCCACCATCCTATTTCGCAATCCCAAGCAGTTAAAGGATGAGTT
AAATAGGCAATTCAGAGAGCAGCATCCCTCACTCCCTCCTTCCTTGACAT
TGAGCAAGATAAGGAGGTTGAAAATACAGGCAGCGCAAGGATGTTGTGCA
TTAGGTGTCGAGTTGGGGACACTGGCTTTGGCATGCGTTTATTTCGAAAA
ATTGTGTTTGCAGGCCTTGGTGACCAAGACAAATCGGAGGATCGCTTTTG
CGACGTGTCTTGTACTCGCTTACAAGTTTCAGGAGCAGGGGTTGCAGGGA
GATGGAGGAAGGGAAAATGGGTGGTTGGGGAAGAAGCTTGGGCAGCGGAA
TGTGAGTGCTGGAAGTTGTAGTAATGTGAGGAAAAGCAATACAAATTTGT
CCTTGTTGCTAGAATGGTTTGACCGTGAATGGGTCGTGAGCAAGAGGCAA
ATATTTAATGCGGAATTTGGGGTGTATTTTCACCTGGGATTCTCGTTACA
TGTGCCGGCGGGGGAGCCGCAATTTCACTTCGTGCGGTTGTGCAGGTTGG
TGGGCGTTTCCCCGAGAATCTATCTCGGGGAGGAGAGATTGAGGGCGTAT
TTGGAAGCGGCGGCAGGGGTAGTGCCGGGGGTGATGGCATGGAGGGAGAG
AAATGACGGGGAGGACGACGGAGGGGAGGGGGGCGAAGGCGGTGGTGGGG
GGGAGGAGGAGGATGAGGATGGGCTGGAAGACACGATGCATGGGGATCGG
TATCACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGTTGGGAGGGTCT
TTGTGGCGGCAACGGCAACGACGGACGGCTGTAAGTTTTCTTGCCCAGAG
ACGGCAGGGACATGATGGCACGGAGGAGGAATTGCGGGAGGAGAGCGTGT
CGTTGATGTCAAAAAGAGAGTCTATGGAGATGGTACGAAGCTTCGCGGTG
GAGGAGGAGGCGGAAGAGGAGAGGGAAAAGAGGAAACGTCGGCGGCCGTC
GTGGACGATGCGGGGATGGAATCTTGTCCGACGCCAGCCGACTATGTAAA
GGGATGATATAGTGGTGGTGAGTGTAAAAAAAGATCGATTACAATTACAA
CATGGCAGGGCCTCCAATACCAGACACCAACAAGAAGGATGTGCGTCCCC
CGTCCGTGACGACACACCATTTTAAGCCCTGCCGTAAAATTTTGACCGAA
TTGTCAAAGAGGATGTACAGCTAAAAAAACGAAAG back to topCoding sequence (CDS) from alignment at chr3:1070086..1072470+ >NO03G03610.1 ID=NO03G03610.1|Name=NO03G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=2199bp|location=Sequence derived from alignment at chr3:1070086..1072470+ (Nannochloropsis oceanica) ATGGAGCTAAGGGAGTTGTCACCTGCGGTCCCGAGGCCTCATAAGCGGGT CCTTGTTCGAAGCAGCAGCAGCGGTACACGAGCTCCAACGTCCACATTCT CCATCCGCCCTCTTCATCAGCACAACCATCTGCACTATCATCATCGGAGG AGCAGCAAAGAGGCGGGGACAAGCTCGAGTGGCCTCTTTCGCAGGAATGG GGACCGGCAACTTGCAGCGCTACATTTTCTAAGTAGCATTCCCATGAAGA ATGAGAGGGCCATATTGGAGGGCACAGTATCGCAGCAGCAACAGCAGCAG CAGCAGCAGCAGCAGCAGCAAATAGAGGGCGCCCGGGGTGCGTCCGCACC CGACGACGGGGAAGAGGAAGATGACGAGGATCTCCTCCTACTTGATTCTC CCTTGGTTGCCGCCGCTACCATAGGTGGCAGCAATAAAGAAAACAACAAT AGTTACAACGAGCAGGCGGCCCGCTACGCAATTGGAAACGTCCTAGTACC TGGCAAAAAGCTCGATGGGCCTCCGGCCTACGTCGTCTCCGTCCCCGAAT CCTTCCGACACAAGTACCAGCAAAGCACCGCGGTAATCCGGCAATGGGAG CGCCAAGTGAGCGATGCCGGTATTTTGGAGGGGCGTTTATTTATCTCCTC GAAGCGGGGTTATCCCTTGGTAGTTTCCTCTGTGATCCAGTTTAAACCTG GCTTGGAGTCGGAGAAAAGACTTCGGGCCAAGCAAGTCAATGAAAGAGGG GCCGAGGCCTTTGATCGCCCTGTGCCTGACTGGCGTGGTGTGAGGTATTG CCGACTGTTGCATGCGGAGTGGGCCCCGTGTTCCGCCGAGAGAGATGCGC GGGATGGAGGGCATCACCAGCATCAGACGTATGGTGGTGGAGGGGGGGGG GAAGGGGAGGGAGGACACGATACAGGTGGTGTGGTGCTTCCTTGTGGAGT GGGGAATGGTGCATATGATCCTGCGTTTTTGGACGATCCGGCGTTGAGCC ATGGGAGGACACGACAGCTTAACATTGGTGGACCCGGGTTAGGTCCTGTG GTGTTTTCCACCATCCTATTTCGCAATCCCAAGCAGTTAAAGGATGAGTT AAATAGGCAATTCAGAGAGCAGCATCCCTCACTCCCTCCTTCCTTGACAT TGAGCAAGATAAGGAGGTTGAAAATACAGGCAGCGCAAGGATGTTGTGCA TTAGGTGTCGAGTTGGGGACACTGGCTTTGGCATGCGTTTATTTCGAAAA ATTGTGTTTGCAGGCCTTGGTGACCAAGACAAATCGGAGGATCGCTTTTG CGACGTGTCTTGTACTCGCTTACAAGTTTCAGGAGCAGGGGTTGCAGGGA GATGGAGGAAGGGAAAATGGGTGGTTGGGGAAGAAGCTTGGGCAGCGGAA TGTGAGTGCTGGAAGTTGTAGTAATGTGAGGAAAAGCAATACAAATTTGT CCTTGTTGCTAGAATGGTTTGACCGTGAATGGGTCGTGAGCAAGAGGCAA ATATTTAATGCGGAATTTGGGGTGTATTTTCACCTGGGATTCTCGTTACA TGTGCCGGCGGGGGAGCCGCAATTTCACTTCGTGCGGTTGTGCAGGTTGG TGGGCGTTTCCCCGAGAATCTATCTCGGGGAGGAGAGATTGAGGGCGTAT TTGGAAGCGGCGGCAGGGGTAGTGCCGGGGGTGATGGCATGGAGGGAGAG AAATGACGGGGAGGACGACGGAGGGGAGGGGGGCGAAGGCGGTGGTGGGG GGGAGGAGGAGGATGAGGATGGGCTGGAAGACACGATGCATGGGGATCGG TATCACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGTTGGGAGGGTCT TTGTGGCGGCAACGGCAACGACGGACGGCTGTAAGTTTTCTTGCCCAGAG ACGGCAGGGACATGATGGCACGGAGGAGGAATTGCGGGAGGAGAGCGTGT CGTTGATGTCAAAAAGAGAGTCTATGGAGATGGTACGAAGCTTCGCGGTG GAGGAGGAGGCGGAAGAGGAGAGGGAAAAGAGGAAACGTCGGCGGCCGTC GTGGACGATGCGGGGATGGAATCTTGTCCGACGCCAGCCGACTATGTAA back to top
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