NO03G03500.1, NO03G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03500.1
Unique NameNO03G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length738
Alignment locationchr3:1046155..1047296 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1046155..1047296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03500.1 vs.
Match: EWM29799.1 (putative peroxisomal protein pox18 [Nannochloropsis gaditana])

HSP 1 Score: 431.4 bits (1108), Expect = 1.900e-117
Identity = 222/245 (90.61%), Postives = 233/245 (95.10%), Query Frame = 0 
Query:    1 MPHAPQIFEEMREAVQEIGPALKKKFTGIVRFEITNVGTWTLDLKSGDGTVITGEGSVKPDLVIKVADDDFASLYEGKSNAQQAFMKGKLKVKGNMSLAMKFNQVLTATRKQLEKGKKKKAAGAAAAAIAVSAAPKAQVVFDQLAEVLPTKGAALVAKMKGVIQWDINGEKWLLDLKNGTGSLSKGTGPADLTVTMADDVFFEVSQGNLSAQQAFMKGQIKIKGNMGMATKLGPILNAAKPTARM 246
            MP AP+IFEEM EAV+EIGP+LKKKF+GIVRFEITN GTWTLDLK+G+G V TGEGSVKPDLVIKVADDDFASLYEGK NAQQAFMKGKLKVKGNMSLAMKFNQVLTATRKQLEK KKKK AGA AAA++ SAAPKAQVVFDQLAEVLPTKGAALVAKMKGVIQWDINGEKWLLDLKNGTGSLSKGTGPADLTVTMADDVFF+VSQG LSAQQAFMKGQIKIKGNMGMATKLGPIL AA+PTAR+
Sbjct:    1 MPRAPEIFEEMSEAVEEIGPSLKKKFSGIVRFEITNTGTWTLDLKTGNGAVTTGEGSVKPDLVIKVADDDFASLYEGKCNAQQAFMKGKLKVKGNMSLAMKFNQVLTATRKQLEKTKKKKTAGAVAAAVSTSAAPKAQVVFDQLAEVLPTKGAALVAKMKGVIQWDINGEKWLLDLKNGTGSLSKGTGPADLTVTMADDVFFQVSQGKLSAQQAFMKGQIKIKGNMGMATKLGPILTAARPTARL 245
The following BLAST results are available for this feature:
BLAST of NO03G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29799.11.900e-11790.61putative peroxisomal protein pox18 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03500NO03G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03500.1NO03G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03500.1.cds1NO03G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03500.1.cds2NO03G03500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03500.1 ID=NO03G03500.1|Name=NO03G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGCCTCACGCGCCCCAAATCTTCGAAGAAATGCGCGAGGCCGTTCAAGA
AATCGGTCCGGCCCTAAAGAAAAAGTTCACGGGCATCGTTCGCTTTGAGA
TCACTAACGTCGGCACCTGGACTCTGGATTTGAAAAGCGGGGACGGCACA
GTCATTACCGGGGAAGGGAGCGTAAAACCCGATCTGGTCATCAAGGTCGC
TGATGATGATTTCGCGTCTTTGTACGAAGGGAAAAGCAATGCTCAACAGG
CATTCATGAAAGGGAAGCTCAAAGTAAAGGGCAATATGAGCCTAGCTATG
AAATTCAACCAGGTTCTGACAGCCACCCGCAAGCAGCTGGAGAAGGGCAA
GAAGAAGAAGGCGGCAGGTGCGGCGGCCGCGGCGATAGCCGTCTCGGCAG
CGCCGAAGGCTCAGGTGGTGTTTGACCAGCTAGCAGAGGTCTTGCCCACG
AAAGGTGCAGCCTTAGTGGCTAAAATGAAGGGAGTGATTCAGTGGGATAT
CAATGGAGAGAAGTGGCTGTTGGACCTTAAGAACGGAACGGGGAGCTTGA
GCAAGGGCACGGGGCCCGCAGACCTGACGGTGACCATGGCGGATGATGTC
TTCTTCGAGGTGTCACAGGGGAACTTGAGCGCGCAGCAGGCATTCATGAA
GGGACAGATTAAGATCAAGGGAAACATGGGAATGGCTACTAAATTAGGAC
CTATTTTGAATGCGGCAAAACCGACGGCGCGGATGTAA
back to top

protein sequence of NO03G03500.1

>NO03G03500.1-protein ID=NO03G03500.1-protein|Name=NO03G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPHAPQIFEEMREAVQEIGPALKKKFTGIVRFEITNVGTWTLDLKSGDGT
VITGEGSVKPDLVIKVADDDFASLYEGKSNAQQAFMKGKLKVKGNMSLAM
KFNQVLTATRKQLEKGKKKKAAGAAAAAIAVSAAPKAQVVFDQLAEVLPT
KGAALVAKMKGVIQWDINGEKWLLDLKNGTGSLSKGTGPADLTVTMADDV
FFEVSQGNLSAQQAFMKGQIKIKGNMGMATKLGPILNAAKPTARM*
back to top

mRNA from alignment at chr3:1046155..1047296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03500.1 ID=NO03G03500.1|Name=NO03G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp|location=Sequence derived from alignment at chr3:1046155..1047296+ (Nannochloropsis oceanica)
ATGCCTCACGCGCCCCAAATCTTCGAAGAAATGCGTAAGTTTAAAGATGG
GGGCGGGATAATTTTGTCTGTATCTATCTTCTTTGCTGCCTCTTGTGTCA
CGCTGCACAACCCCCTTCCTTTTATTGACATAAGGCTTCTCTTCAAGGAG
AACGGCTGCAGTAAAAACCTAGAGAAATGACACACTTTCCTAGAAGTGGT
GATTGCCGAGGAAATGGAAAGTTGATGCTCTGTTGACGGCTCTGACAATT
TATCATCCTTCCATCAACACAAGCATCCTTCTTCTATATAAATACATGGG
GTGAAAGATTTCCAAACATCTATATCTCATTCTGAAAAGCATATGTAATC
GTCTTCGTGGTACTTTAAGAAAAAGATTCCTCCTCCAATCCTTTACACTT
ACCCGTAGCCTTCCCCCCCCCCACGACAATTTACTCAGGCGAGGCCGTTC
AAGAAATCGGTCCGGCCCTAAAGAAAAAGTTCACGGGCATCGTTCGCTTT
GAGATCACTAACGTCGGCACCTGGACTCTGGATTTGAAAAGCGGGGACGG
CACAGTCATTACCGGGGAAGGGAGCGTAAAACCCGATCTGGTCATCAAGG
TCGCTGATGATGATTTCGCGTCTTTGTACGAAGGGAAAAGCAATGCTCAA
CAGGCATTCATGAAAGGGAAGCTCAAAGTAAAGGGCAATATGAGCCTAGC
TATGAAATTCAACCAGGTTCTGACAGCCACCCGCAAGCAGCTGGAGAAGG
GCAAGAAGAAGAAGGCGGCAGGTGCGGCGGCCGCGGCGATAGCCGTCTCG
GCAGCGCCGAAGGCTCAGGTGGTGTTTGACCAGCTAGCAGAGGTCTTGCC
CACGAAAGGTGCAGCCTTAGTGGCTAAAATGAAGGGAGTGATTCAGTGGG
ATATCAATGGAGAGAAGTGGCTGTTGGACCTTAAGAACGGAACGGGGAGC
TTGAGCAAGGGCACGGGGCCCGCAGACCTGACGGTGACCATGGCGGATGA
TGTCTTCTTCGAGGTGTCACAGGGGAACTTGAGCGCGCAGCAGGCATTCA
TGAAGGGACAGATTAAGATCAAGGGAAACATGGGAATGGCTACTAAATTA
GGACCTATTTTGAATGCGGCAAAACCGACGGCGCGGATGTAA
back to top

Coding sequence (CDS) from alignment at chr3:1046155..1047296+

>NO03G03500.1 ID=NO03G03500.1|Name=NO03G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr3:1046155..1047296+ (Nannochloropsis oceanica)
ATGCCTCACGCGCCCCAAATCTTCGAAGAAATGCGCGAGGCCGTTCAAGA
AATCGGTCCGGCCCTAAAGAAAAAGTTCACGGGCATCGTTCGCTTTGAGA
TCACTAACGTCGGCACCTGGACTCTGGATTTGAAAAGCGGGGACGGCACA
GTCATTACCGGGGAAGGGAGCGTAAAACCCGATCTGGTCATCAAGGTCGC
TGATGATGATTTCGCGTCTTTGTACGAAGGGAAAAGCAATGCTCAACAGG
CATTCATGAAAGGGAAGCTCAAAGTAAAGGGCAATATGAGCCTAGCTATG
AAATTCAACCAGGTTCTGACAGCCACCCGCAAGCAGCTGGAGAAGGGCAA
GAAGAAGAAGGCGGCAGGTGCGGCGGCCGCGGCGATAGCCGTCTCGGCAG
CGCCGAAGGCTCAGGTGGTGTTTGACCAGCTAGCAGAGGTCTTGCCCACG
AAAGGTGCAGCCTTAGTGGCTAAAATGAAGGGAGTGATTCAGTGGGATAT
CAATGGAGAGAAGTGGCTGTTGGACCTTAAGAACGGAACGGGGAGCTTGA
GCAAGGGCACGGGGCCCGCAGACCTGACGGTGACCATGGCGGATGATGTC
TTCTTCGAGGTGTCACAGGGGAACTTGAGCGCGCAGCAGGCATTCATGAA
GGGACAGATTAAGATCAAGGGAAACATGGGAATGGCTACTAAATTAGGAC
CTATTTTGAATGCGGCAAAACCGACGGCGCGGATGTAA
back to top
Synonyms
Publications