NO03G03480.1, NO03G03480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03480.1
Unique NameNO03G03480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr3:1043487..1044158 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1043487..1044158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03480.1 vs.
Match: EWM29791.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 409.5 bits (1051), Expect = 6.900e-111
Identity = 204/223 (91.48%), Postives = 213/223 (95.52%), Query Frame = 0 
Query:    1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYYQ 224
            MRS+  ++A TAA+S+AFV+PS PKAP TQL+ KSKAVPFLEAPKALDGSLPADVGFDPL LSDI FDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGA IYEMSKGSDRAAG+FSFDPLGLGKDP+KYARYQVSEIKNGRLAMLAFGGIATQAVLTN GFPYYQ
Sbjct:    1 MRSVAFIVATTAAMSTAFVLPSAPKAPQTQLAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPYYQ 223
The following BLAST results are available for this feature:
BLAST of NO03G03480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29791.16.900e-11191.48light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03480NO03G03480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03480.1NO03G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03480.1.cds1NO03G03480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03480.1 ID=NO03G03480.1|Name=NO03G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGCGTTCCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGC
CTTCGTCATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCA
AGAGCAAGGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCC
CTCCCCGCGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTT
TGACTTCACTTACCTAATGGTACCTACAAAGTGGGACGAGTCCCGCACTG
GCCTGTCCGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGC
TTCGCCATGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCG
TTTGCCGGTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATG
TATTCGTCAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTT
CTAGAGGTAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGA
CCGAGCGGCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACC
CGTCTAAGTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTT
GCCATGCTCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAG
TGGCTTCCCTTACTACCAGTAA
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protein sequence of NO03G03480.1

>NO03G03480.1-protein ID=NO03G03480.1-protein|Name=NO03G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGS
LPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGR
FAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGF
LEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRL
AMLAFGGIATQAVLTNSGFPYYQ*
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mRNA from alignment at chr3:1043487..1044158+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03480.1 ID=NO03G03480.1|Name=NO03G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at chr3:1043487..1044158+ (Nannochloropsis oceanica)
ATGCGTTCCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGC
CTTCGTCATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCA
AGAGCAAGGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCC
CTCCCCGCGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTT
TGACTTCACTTACCTAATGGTACCTACAAAGTGGGACGAGTCCCGCACTG
GCCTGTCCGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGC
TTCGCCATGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCG
TTTGCCGGTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATG
TATTCGTCAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTT
CTAGAGGTAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGA
CCGAGCGGCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACC
CGTCTAAGTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTT
GCCATGCTCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAG
TGGCTTCCCTTACTACCAGTAA
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Coding sequence (CDS) from alignment at chr3:1043487..1044158+

>NO03G03480.1 ID=NO03G03480.1|Name=NO03G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr3:1043487..1044158+ (Nannochloropsis oceanica)
ATGCGTTCCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGC
CTTCGTCATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCA
AGAGCAAGGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCC
CTCCCCGCGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTT
TGACTTCACTTACCTAATGGTACCTACAAAGTGGGACGAGTCCCGCACTG
GCCTGTCCGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGC
TTCGCCATGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCG
TTTGCCGGTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATG
TATTCGTCAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTT
CTAGAGGTAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGA
CCGAGCGGCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACC
CGTCTAAGTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTT
GCCATGCTCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAG
TGGCTTCCCTTACTACCAGTAA
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Synonyms
Publications