NO03G03110.3, NO03G03110.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03110.3
Unique Name	NO03G03110.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2512
Alignment location	chr3:929187..932251 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:929187..932251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G03110.3 vs.
Match: EWM29755.1 (aspartate-semialdehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 438.3 bits (1126), Expect = 1.800e-119
Identity = 227/281 (80.78%), Postives = 242/281 (86.12%), Query Frame = 0

Query:    1 MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTAVDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPTPFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSSAFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIKKVIMSTYQAASGAGAEGMDELKTGIASFVKGQPIKNEFFAYPLPFNVIPHIDVFQENGYTKEEMKVTWEARKILGVPDLAV 282
            MRA++ V  L++  A AFMPT   SA RA   TSA RRR G  LTPMM    G  LKVGIVGATGAVGEEIVKVLG+R FPVSELHLYASARSAGKSV TPFGSV+IEEF+L  ARGLDVIFLAVGGDFS +YA KLS  DGPVVIDNSSAFR+DP VPL+VPEIN + AKGKKLIANPNCTTAIGLMALFPLHVA+GIKKVIMSTYQAASGAGAEGMDELK GIASFVKG+P+KNEFFAYPLPFNVIP IDVF +N YTKEEMKVTWEARKILGVPDL V
Sbjct:   39 MRALIAVFSLYICSAMAFMPTTLPSASRACVRTSAGRRRAGTRLTPMMAVDQGSTLKVGIVGATGAVGEEIVKVLGHRNFPVSELHLYASARSAGKSVATPFGSVSIEEFDLDKARGLDVIFLAVGGDFSKEYAIKLSATDGPVVIDNSSAFRLDPSVPLIVPEINQQAAKGKKLIANPNCTTAIGLMALFPLHVAFGIKKVIMSTYQAASGAGAEGMDELKAGIASFVKGEPVKNEFFAYPLPFNVIPQIDVFTDNLYTKEEMKVTWEARKILGVPDLPV 319

The following BLAST results are available for this feature:

BLAST of NO03G03110.3 vs.

BLAST of NO03G03110.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29755.1	1.800e-119	80.78	aspartate-semialdehyde dehydrogenase [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03110	NO03G03110	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03110.3	NO03G03110.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03110.3.cds1	NO03G03110.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03110.3.cds2	NO03G03110.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03110.3.cds3	NO03G03110.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:929187..932251+
coding sequence from alignment at chr3:929187..932251+

mRNA sequence

>NO03G03110.3 ID=NO03G03110.3|Name=NO03G03110.3|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp
GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG
GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA
GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG
GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC
GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT
CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG
TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA
CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA
GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCAC
CTCCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCG
CGGTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCA
GTAGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTC
TGAGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGA
CGCCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGA
GGATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTA
CGCACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCAT
CTGCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAAC
CACAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGAC
GGCGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTA
AAAAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAA
GGCATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCC
GATCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTC
ACATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTC
ACTTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTA
GGGAGAGAAGGGGAGGAGGGGGGGAGGGGTTTGTGGTTTCGAAGCTCTGT
GCGTGCGCTGTATTTTGCCTGTACCTCGTTTCTGCCTCCTCGGACGTTCG
CAATTGATATCACACGTACCCCTCCACTCTTCTTTGCCTTTTTTCTGGGC
TGACCCCTTCCATTCCTCAAGTTGCACTGCAGTCCGCATCCCCACCCTGC
GGGCTCACTCAGAGGCCATTGTCATCGAGACCGAAAAGCCCGTCACGCCC
GAAGGCGCCCGAGAGGTCCTTGGGAACTTTCCGGGACTCAAGGTGGTGGA
TGACACAAGCACGAAGCAATACCCTATGCCCTTGACAGCCACCAACCACT
ACGACGTGGAGGTGGGCCGCATTCGTCAGAACATCGTCTTTGGGGACCAC
GGCCTGGAGCTGTTTGTGTGTGGGGATCAGCTTTTACGCGGGGCTGCATT
AAATGCTGTGATAATTGCTGAGATGCTGTAGAGTGATGAGGAAAGACGAG
AGGGAAGGGTTATGGGGCGGGGAATATTGAGGTTTGACACAGACTACACA
GAGTAAGGATATAAAACATTTGCAAAAGCACGCATAAGTGGCTGTAAAGA
CATTGCCCATCGTCGGAAAGAGGAAAACAGAACATCGTTAAAAAAAAAAA
AAAAGAAGCACAAAGCGTTCTTACCTAATGCCCGGTTTGTCCCTATGGCT
ACACAAAACTGAAATGGTTCTGCTCCAACGAACCATAACTCATCGTAAAT
TTAGGTAAACGACGAAATTTGGCGTGGTCTGACCTTCGTTAGTATGATCT
GTGGCGTTTTTTTTTAGGATTGGCTTTTTATGAGGCGATGTGGTGCCCAC
GAGGAGGAAAAACAAGAGTGCAAAAGAGATGACTTACAGCCAGTCAATGA
CACATGTTGTTACCACGATCGCATCTACTTTGAGGTGGACAAGAGATTTG
AATATGTGAAGGTCAGGAAGAAGGAAGAGAAGGGTCCCAGCGTGAACAGG
GTCGCAGGTGCGGGTGCTTGTTCTTCCTACATTCAAGCCAAAAATCAATC
AAAAAAGACTAGATATCGAGACAAAAGACTACAGACTTCCAATTTATACT
GGGTAAAGATCATTCACAGGTCTTTGAAAGCCATGTTCACTCCTCCATAG
GAGGGCGACAGGAGAGAGGCAAGAGGGAGAGGGGTGGAGAAACGATTGAA
AGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAGGTCGGAAGTGA
CTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTCGTTGTACGAGC
TTTGAATTCGCT

protein sequence of NO03G03110.3

>NO03G03110.3-protein ID=NO03G03110.3-protein|Name=NO03G03110.3|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTA
VDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPT
PFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSS
AFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIK
KVIMSTYQAASGAGAEGMDELKTGIASFVKGQPIKNEFFAYPLPFNVIPH
IDVFQENGYTKEEMKVTWEARKILGVPDLAVR*

mRNA from alignment at chr3:929187..932251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G03110.3 ID=NO03G03110.3|Name=NO03G03110.3|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica)
GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG
GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA
GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG
GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC
GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT
CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG
TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA
CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA
GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGGTGAGTTCCTCGT
TACCCGTCCTTTTCTCCCCTAAGTCCCTACTTTCAATACCTTGCCCTGTC
CTTATTTCCCCGCTGCATCAACTTACACACACACGCCCACTTACACACTC
TCCCCAAATACAGCCACCACCACCACCTCCGCATGGCGAAGGCGGACGGG
AGTTGCGCTGACGCCCATGATGACCGCGGTTGACGGGGGTAAGCTCAAGG
TAGGAATTGTGGGGGCGACGGGCGCAGTAGGAGAGGAGATTGTGAAGGTG
CTGGGCAATCGGCAATTCCCCGTGTCTGAGCTTCATTTGTACGCCTCGGC
GCGTTCCGCGGGTAAGAGCGTGCCGACGCCGTTTGGGTCTGTGACCATCG
AGGAGTTTGAGCTCGGCAATGCGAGAGGATTGGACGTGATTTTCCTGGCG
GTCGGTGGGGACTTCTCATTGAAGTACGCACACAAGCTCTCGGAGGGGGA
CGGGCCTGTTGTAATCGACAATTCATCTGCTTTTCGAATGGATCCTGACG
TCCCGCTGGTGGTGCCGGAGATCAACCACAAGACGGCAAAAGGGAAGAAA
CTTATTGCCAACCCGAATTGTACGACGGCGATCGGGTTGATGGCTCTTTT
CCCGCTGCATGTGGCCTATGGAATTAAAAAGGTGATTATGTCGACGTACC
AGGCGGCGTCGGGTGCCGGGGCCGAAGGTGCGTGGTGTTGGGAGGGCAGA
GGTGGAAAAAGAGGATATATACCGATACCCTTATATATTCTTGTTGTCGT
TGGCGGCGACACATGGAACATGAAAGCGGGAGTTATGCCTCCTAATCACT
CGCATTCAGGACCCTCCCTCCCCTTCTCCGCCCACCATCCCCTCCCCAGG
CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA
TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC
ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC
TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTAGG
GAGAGAAGGGGAGGAGGGGGGGAGGGGTTTGTGGTTTCGAAGCTCTGTGC
GTGCGCTGTATTTTGCCTGTACCTCGTTTCTGCCTCCTCGGACGTTCGCA
ATTGATATCACACGTACCCCTCCACTCTTCTTTGCCTTTTTTCTGGGCTG
ACCCCTTCCATTCCTCAAGTTGCACTGCAGTCCGCATCCCCACCCTGCGG
GCTCACTCAGAGGCCATTGTCATCGAGACCGAAAAGCCCGTCACGCCCGA
AGGCGCCCGAGAGGTCCTTGGGAACTTTCCGGGACTCAAGGTGGTGGATG
ACACAAGCACGAAGCAATACCCTATGCCCTTGACAGCCACCAACCACTAC
GACGTGGAGGTGGGCCGCATTCGTCAGAACATCGTCTTTGGGGACCACGG
CCTGGAGCTGTTTGTGTGTGGGGATCAGGTGCGTTTTCGAGGGAGGGAGG
GAGGGAGGGAAGGAGGGGGTGGGAAAAGGGAGGGAGGGAGGATGGGAGAG
AGGTGAGCATGGGAGGGAAGGAAGGAGGAAAGCATGGGCGCCATTTGCAA
GCACAAACACACATACATACATACATACACACACACATATATATAATATA
TATATATATATATATAATTGCATACATAGTGCTCATTTCCTGCCCGCAAA
ATATATGCGCATGCACTTACATTTCTTTTACAGCTTTTACGCGGGGCTGC
ATTAAATGCTGTGATAATTGCTGAGATGCTGTAGAGTGATGAGGAAAGAC
GAGAGGGAAGGGTTATGGGGCGGGGAATATTGAGGTTTGACACAGACTAC
ACAGAGTAAGGATATAAAACATTTGCAAAAGCACGCATAAGTGGCTGTAA
AGACATTGCCCATCGTCGGAAAGAGGAAAACAGAACATCGTTAAAAAAAA
AAAAAAAGAAGCACAAAGCGTTCTTACCTAATGCCCGGTTTGTCCCTATG
GCTACACAAAACTGAAATGGTTCTGCTCCAACGAACCATAACTCATCGTA
AATTTAGGTAAACGACGAAATTTGGCGTGGTCTGACCTTCGTTAGTATGA
TCTGTGGCGTTTTTTTTTAGGATTGGCTTTTTATGAGGCGATGTGGTGCC
CACGAGGAGGAAAAACAAGAGTGCAAAAGAGATGACTTACAGCCAGTCAA
TGACACATGTTGTTACCACGATCGCATCTACTTTGAGGTGGACAAGAGAT
TTGAATATGTGAAGGTCAGGAAGAAGGAAGAGAAGGGTCCCAGCGTGAAC
AGGGTCGCAGGTGCGGGTGCTTGTTCTTCCTACATTCAAGCCAAAAATCA
ATCAAAAAAGACTAGATATCGAGACAAAAGACTACAGACTTCCAATTTAT
ACTGGGTAAAGATCATTCACAGGTCTTTGAAAGCCATGTTCACTCCTCCA
TAGGAGGGCGACAGGAGAGAGGCAAGAGGGAGAGGGGTGGAGAAACGATT
GAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAGGTCGGAAG
TGACTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTCGTTGTACG
AGCTTTGAATTCGCT

Coding sequence (CDS) from alignment at chr3:929187..932251+

>NO03G03110.3 ID=NO03G03110.3|Name=NO03G03110.3|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica)
ATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCAGC
CTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCACCT
CCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCGCG
GTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCAGT
AGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTCTG
AGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGACG
CCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGAGG
ATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTACG
CACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCATCT
GCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAACCA
CAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGACGG
CGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTAAA
AAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAAGG
CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA
TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC
ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC
TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTAG

Synonyms

Publications