|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:929187..932251 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03110.1 vs.
Match: EWM29755.1 (aspartate-semialdehyde dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 616.3 bits (1588), Expect = 6.400e-173 Identity = 316/384 (82.29%), Postives = 338/384 (88.02%), Query Frame = 0
Query: 1 MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTAVDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPTPFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSSAFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIKKVIMSTYQAASGAGAEGMDELKTGIASFVKGQPIKNEFFAYPLPFNVIPHIDVFQENGYTKEEMKVTWEARKILGVPDLAVSCTAVRIPTLRAHSEAIVIETEKPVTPEGAREVLGNFPGLKVVDDTSTKQYPMPLTATNHYDVEVGRIRQNIVFGDHGLELFVCGDQLLRGAALNAVIIAEML 385
MRA++ V L++ A AFMPT SA RA TSA RRR G LTPMM G LKVGIVGATGAVGEEIVKVLG+R FPVSELHLYASARSAGKSV TPFGSV+IEEF+L ARGLDVIFLAVGGDFS +YA KLS DGPVVIDNSSAFR+DP VPL+VPEIN + AKGKKLIANPNCTTAIGLMALFPLHVA+GIKKVIMSTYQAASGAGAEGMDELK GIASFVKG+P+KNEFFAYPLPFNVIP IDVF +N YTKEEMKVTWEARKILGVPDL VSCTAVRIPTLRAHSEAI IETE+PVTP+GAREVLG FPGLKVVDD + K YPMPLTAT+ YDVEVGR+RQNIVFGDHGL++FVCGDQLLRGAALNAVIIAE L
Sbjct: 39 MRALIAVFSLYICSAMAFMPTTLPSASRACVRTSAGRRRAGTRLTPMMAVDQGSTLKVGIVGATGAVGEEIVKVLGHRNFPVSELHLYASARSAGKSVATPFGSVSIEEFDLDKARGLDVIFLAVGGDFSKEYAIKLSATDGPVVIDNSSAFRLDPSVPLIVPEINQQAAKGKKLIANPNCTTAIGLMALFPLHVAFGIKKVIMSTYQAASGAGAEGMDELKAGIASFVKGEPVKNEFFAYPLPFNVIPQIDVFTDNLYTKEEMKVTWEARKILGVPDLPVSCTAVRIPTLRAHSEAITIETERPVTPDGAREVLGKFPGLKVVDDPAKKLYPMPLTATSVYDVEVGRVRQNIVFGDHGLDIFVCGDQLLRGAALNAVIIAEKL 422
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03110.1 ID=NO03G03110.1|Name=NO03G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCAC CTCCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCG CGGTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCA GTAGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTC TGAGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGA CGCCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGA GGATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTA CGCACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCAT CTGCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAAC CACAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGAC GGCGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTA AAAAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAA GGCATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCC GATCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTC ACATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTC ACTTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGTTG CACTGCAGTCCGCATCCCCACCCTGCGGGCTCACTCAGAGGCCATTGTCA TCGAGACCGAAAAGCCCGTCACGCCCGAAGGCGCCCGAGAGGTCCTTGGG AACTTTCCGGGACTCAAGGTGGTGGATGACACAAGCACGAAGCAATACCC TATGCCCTTGACAGCCACCAACCACTACGACGTGGAGGTGGGCCGCATTC GTCAGAACATCGTCTTTGGGGACCACGGCCTGGAGCTGTTTGTGTGTGGG GATCAGCTTTTACGCGGGGCTGCATTAAATGCTGTGATAATTGCTGAGAT GCTGTAGAGTGATGAGGAAAGACGAGAGGGAAGGGTTATGGGGCGGGGAA TATTGAGGTTTGACACAGACTACACAGAGTAAGGATATAAAACATTTGCA AAAGCACGCATAAGTGGCTGTAAAGACATTGCCCATCGTCGGAAAGAGGA AAACAGAACATCGTTAAAAAAAAAAAAAAAGAAGCACAAAGCGTTCTTAC CTAATGCCCGGTTTGTCCCTATGGCTACACAAAACTGAAATGGTTCTGCT CCAACGAACCATAACTCATCGTAAATTTAGGTAAACGACGAAATTTGGCG TGGTCTGACCTTCGTTAGTATGATCTGTGGCGTTTTTTTTTAGGATTGGC TTTTTATGAGGCGATGTGGTGCCCACGAGGAGGAAAAACAAGAGTGCAAA AGAGATGACTTACAGCCAGTCAATGACACATGTTGTTACCACGATCGCAT CTACTTTGAGGTGGACAAGAGATTTGAATATGTGAAGGTCAGGAAGAAGG AAGAGAAGGGTCCCAGCGTGAACAGGGTCGCAGGTGCGGGTGCTTGTTCT TCCTACATTCAAGCCAAAAATCAATCAAAAAAGACTAGATATCGAGACAA AAGACTACAGACTTCCAATTTATACTGGGTAAAGATCATTCACAGGTCTT TGAAAGCCATGTTCACTCCTCCATAGGAGGGCGACAGGAGAGAGGCAAGA GGGAGAGGGGTGGAGAAACGATTGAAAGACTCTTCCACTTGGAAATCAAA AACAATTCCAAAAAGGTCGGAAGTGACTGGTAATGAAGTTTCATGCATAT GCGTTTGCTTATGTCGTTGTACGAGCTTTGAATTCGCT back to topprotein sequence of NO03G03110.1 >NO03G03110.1-protein ID=NO03G03110.1-protein|Name=NO03G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp MRAVLPVMCLFLSYASAFMPTMPASALRATTTTSAWRRRTGVALTPMMTA VDGGKLKVGIVGATGAVGEEIVKVLGNRQFPVSELHLYASARSAGKSVPT PFGSVTIEEFELGNARGLDVIFLAVGGDFSLKYAHKLSEGDGPVVIDNSS AFRMDPDVPLVVPEINHKTAKGKKLIANPNCTTAIGLMALFPLHVAYGIK KVIMSTYQAASGAGAEGMDELKTGIASFVKGQPIKNEFFAYPLPFNVIPH IDVFQENGYTKEEMKVTWEARKILGVPDLAVSCTAVRIPTLRAHSEAIVI ETEKPVTPEGAREVLGNFPGLKVVDDTSTKQYPMPLTATNHYDVEVGRIR QNIVFGDHGLELFVCGDQLLRGAALNAVIIAEML* back to topmRNA from alignment at chr3:929187..932251+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03110.1 ID=NO03G03110.1|Name=NO03G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica) GCTCATTATTTTGCCTTTATACTGTGATGGCGGCTTTTGTAGCAATGCAG
GATGGAAGGCCGCTCTGATTTTAAGTATCTTTTCCATCATCGCAGCAGCA
GCACCATCAGCACCAGCCCAACATCATCCATCTATTACCCTATTTTGCCG
GAAATGACCCCGCACATTTGTGTCCATCGTAGAGGTGGTACACAAATACC
GCGCTCTATTCCCTTCGAATCTGCTGCGAACGATTTTAGCGCATTTTGCT
CACCCACCTCACATTACACTCCCTCCCCCCAGGCCAGGCCACTGTCGCCG
TCGCTGGTTCTTCGCCGCTGCTGCAACCACAGCCACAACGCCCCCTTGAA
CCATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCA
GCCTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGGTGAGTTCCTCGT
TACCCGTCCTTTTCTCCCCTAAGTCCCTACTTTCAATACCTTGCCCTGTC
CTTATTTCCCCGCTGCATCAACTTACACACACACGCCCACTTACACACTC
TCCCCAAATACAGCCACCACCACCACCTCCGCATGGCGAAGGCGGACGGG
AGTTGCGCTGACGCCCATGATGACCGCGGTTGACGGGGGTAAGCTCAAGG
TAGGAATTGTGGGGGCGACGGGCGCAGTAGGAGAGGAGATTGTGAAGGTG
CTGGGCAATCGGCAATTCCCCGTGTCTGAGCTTCATTTGTACGCCTCGGC
GCGTTCCGCGGGTAAGAGCGTGCCGACGCCGTTTGGGTCTGTGACCATCG
AGGAGTTTGAGCTCGGCAATGCGAGAGGATTGGACGTGATTTTCCTGGCG
GTCGGTGGGGACTTCTCATTGAAGTACGCACACAAGCTCTCGGAGGGGGA
CGGGCCTGTTGTAATCGACAATTCATCTGCTTTTCGAATGGATCCTGACG
TCCCGCTGGTGGTGCCGGAGATCAACCACAAGACGGCAAAAGGGAAGAAA
CTTATTGCCAACCCGAATTGTACGACGGCGATCGGGTTGATGGCTCTTTT
CCCGCTGCATGTGGCCTATGGAATTAAAAAGGTGATTATGTCGACGTACC
AGGCGGCGTCGGGTGCCGGGGCCGAAGGTGCGTGGTGTTGGGAGGGCAGA
GGTGGAAAAAGAGGATATATACCGATACCCTTATATATTCTTGTTGTCGT
TGGCGGCGACACATGGAACATGAAAGCGGGAGTTATGCCTCCTAATCACT
CGCATTCAGGACCCTCCCTCCCCTTCTCCGCCCACCATCCCCTCCCCAGG
CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA
TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC
ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC
TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGGTAGG
GAGAGAAGGGGAGGAGGGGGGGAGGGGTTTGTGGTTTCGAAGCTCTGTGC
GTGCGCTGTATTTTGCCTGTACCTCGTTTCTGCCTCCTCGGACGTTCGCA
ATTGATATCACACGTACCCCTCCACTCTTCTTTGCCTTTTTTCTGGGCTG
ACCCCTTCCATTCCTCAAGTTGCACTGCAGTCCGCATCCCCACCCTGCGG
GCTCACTCAGAGGCCATTGTCATCGAGACCGAAAAGCCCGTCACGCCCGA
AGGCGCCCGAGAGGTCCTTGGGAACTTTCCGGGACTCAAGGTGGTGGATG
ACACAAGCACGAAGCAATACCCTATGCCCTTGACAGCCACCAACCACTAC
GACGTGGAGGTGGGCCGCATTCGTCAGAACATCGTCTTTGGGGACCACGG
CCTGGAGCTGTTTGTGTGTGGGGATCAGGTGCGTTTTCGAGGGAGGGAGG
GAGGGAGGGAAGGAGGGGGTGGGAAAAGGGAGGGAGGGAGGATGGGAGAG
AGGTGAGCATGGGAGGGAAGGAAGGAGGAAAGCATGGGCGCCATTTGCAA
GCACAAACACACATACATACATACATACACACACACATATATATAATATA
TATATATATATATATAATTGCATACATAGTGCTCATTTCCTGCCCGCAAA
ATATATGCGCATGCACTTACATTTCTTTTACAGCTTTTACGCGGGGCTGC
ATTAAATGCTGTGATAATTGCTGAGATGCTGTAGAGTGATGAGGAAAGAC
GAGAGGGAAGGGTTATGGGGCGGGGAATATTGAGGTTTGACACAGACTAC
ACAGAGTAAGGATATAAAACATTTGCAAAAGCACGCATAAGTGGCTGTAA
AGACATTGCCCATCGTCGGAAAGAGGAAAACAGAACATCGTTAAAAAAAA
AAAAAAAGAAGCACAAAGCGTTCTTACCTAATGCCCGGTTTGTCCCTATG
GCTACACAAAACTGAAATGGTTCTGCTCCAACGAACCATAACTCATCGTA
AATTTAGGTAAACGACGAAATTTGGCGTGGTCTGACCTTCGTTAGTATGA
TCTGTGGCGTTTTTTTTTAGGATTGGCTTTTTATGAGGCGATGTGGTGCC
CACGAGGAGGAAAAACAAGAGTGCAAAAGAGATGACTTACAGCCAGTCAA
TGACACATGTTGTTACCACGATCGCATCTACTTTGAGGTGGACAAGAGAT
TTGAATATGTGAAGGTCAGGAAGAAGGAAGAGAAGGGTCCCAGCGTGAAC
AGGGTCGCAGGTGCGGGTGCTTGTTCTTCCTACATTCAAGCCAAAAATCA
ATCAAAAAAGACTAGATATCGAGACAAAAGACTACAGACTTCCAATTTAT
ACTGGGTAAAGATCATTCACAGGTCTTTGAAAGCCATGTTCACTCCTCCA
TAGGAGGGCGACAGGAGAGAGGCAAGAGGGAGAGGGGTGGAGAAACGATT
GAAAGACTCTTCCACTTGGAAATCAAAAACAATTCCAAAAAGGTCGGAAG
TGACTGGTAATGAAGTTTCATGCATATGCGTTTGCTTATGTCGTTGTACG
AGCTTTGAATTCGCT back to topCoding sequence (CDS) from alignment at chr3:929187..932251+ >NO03G03110.1 ID=NO03G03110.1|Name=NO03G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr3:929187..932251+ (Nannochloropsis oceanica) ATGCGTGCGGTTCTACCTGTCATGTGCTTGTTTCTATCCTATGCTTCAGC CTTTATGCCGACTATGCCTGCCAGCGCGTTACGAGCCACCACCACCACCT CCGCATGGCGAAGGCGGACGGGAGTTGCGCTGACGCCCATGATGACCGCG GTTGACGGGGGTAAGCTCAAGGTAGGAATTGTGGGGGCGACGGGCGCAGT AGGAGAGGAGATTGTGAAGGTGCTGGGCAATCGGCAATTCCCCGTGTCTG AGCTTCATTTGTACGCCTCGGCGCGTTCCGCGGGTAAGAGCGTGCCGACG CCGTTTGGGTCTGTGACCATCGAGGAGTTTGAGCTCGGCAATGCGAGAGG ATTGGACGTGATTTTCCTGGCGGTCGGTGGGGACTTCTCATTGAAGTACG CACACAAGCTCTCGGAGGGGGACGGGCCTGTTGTAATCGACAATTCATCT GCTTTTCGAATGGATCCTGACGTCCCGCTGGTGGTGCCGGAGATCAACCA CAAGACGGCAAAAGGGAAGAAACTTATTGCCAACCCGAATTGTACGACGG CGATCGGGTTGATGGCTCTTTTCCCGCTGCATGTGGCCTATGGAATTAAA AAGGTGATTATGTCGACGTACCAGGCGGCGTCGGGTGCCGGGGCCGAAGG CATGGACGAGCTCAAGACGGGCATCGCCAGCTTTGTCAAAGGCCAGCCGA TCAAGAACGAGTTCTTCGCCTACCCCCTCCCCTTCAACGTCATTCCTCAC ATTGACGTCTTCCAGGAAAATGGGTACACGAAGGAGGAGATGAAAGTCAC TTGGGAGGCACGCAAGATCTTGGGGGTTCCCGATTTGGCTGTTAGTTGCA CTGCAGTCCGCATCCCCACCCTGCGGGCTCACTCAGAGGCCATTGTCATC GAGACCGAAAAGCCCGTCACGCCCGAAGGCGCCCGAGAGGTCCTTGGGAA CTTTCCGGGACTCAAGGTGGTGGATGACACAAGCACGAAGCAATACCCTA TGCCCTTGACAGCCACCAACCACTACGACGTGGAGGTGGGCCGCATTCGT CAGAACATCGTCTTTGGGGACCACGGCCTGGAGCTGTTTGTGTGTGGGGA TCAGCTTTTACGCGGGGCTGCATTAAATGCTGTGATAATTGCTGAGATGC TGTAG back to top
|