NO03G03090.1, NO03G03090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03090.1
Unique NameNO03G03090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length836
Alignment locationchr3:924577..925719 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:924577..925719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03090.1 vs.
Match: EWM29772.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 3.200e-71
Identity = 133/153 (86.93%), Postives = 142/153 (92.81%), Query Frame = 0 
Query:   22 LIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDQPDKSGRTALHWASISGHMESAELLVENGANLMAETSSKMTPLHGAAEGGRAELIRMFLEKGDKMVLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCVM 175
            +I+G EFDVNEAGAG+RRPLHRAAGSNH+E+CRYLIE+GA IDQ DKSGRTALHWASISGH E+AELLVE GANLMAETSSKMTPLHGAAEGGRAELIR+FL KGDK  LVNARD DNKT FDLAMQGKHAAV+K LKEMGDPNAQGAACCVM
Sbjct:    1 MIEGKEFDVNEAGAGDRRPLHRAAGSNHIEVCRYLIERGAKIDQADKSGRTALHWASISGHQETAELLVERGANLMAETSSKMTPLHGAAEGGRAELIRLFLTKGDKDALVNARDADNKTPFDLAMQGKHAAVVKALKEMGDPNAQGAACCVM 153
The following BLAST results are available for this feature:
BLAST of NO03G03090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29772.13.200e-7186.93ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03090NO03G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03090.1NO03G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03090.1.cds1NO03G03090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03090.1.cds2NO03G03090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03090.1.cds3NO03G03090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03090.1 ID=NO03G03090.1|Name=NO03G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=836bp
AAACGATAGGGGAGGCAACGAAGCCTCAAGCTCAGACGAGGACGATACGT
CAGGCCCATTTTTGTTTTTTTGGGTCGCGGCGCTCCGCCAAATCTCTTCT
TACCATCTGGGTGCAGCCACGCTACGGTGCGTCAAGAGAAAAGTACACAA
GCCAGAATTGACTGAGAGGGACGACTTATAATCATGCCAAACGACTCCGC
CCTGCACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGA
TTGATGGCGGGGAATTCGACGTTAATGAAGCGGGAGCGGGTGAAAGAAGA
CCACTGCATCGAGCAGCTGGCAGCAATCACGTGGAAATATGCCGGTACTT
AATTGAGAAGGGTGCCAATATTGACCAGCCTGACAAGAGTGGGCGAACTG
CTTTGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGAATTGCTG
GTGGAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAATGACACC
CTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGGATGTTTC
TGGAAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATATCGATAAC
AAGACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTGTCATTAA
GGTGTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCTTGCTGCG
TCATGTAAGTCCTTGACTAACCATACAATATATCACGCGCGAAGGAAGAT
TAGGGCAAACAGGAAAAGGGAAAGAGGAGGAGGCAAGAAAAAAAGAAATA
AATAAGAATTTGTGAAGCACAATGAAGGGTTTTGAT
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protein sequence of NO03G03090.1

>NO03G03090.1-protein ID=NO03G03090.1-protein|Name=NO03G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHV
EICRYLIEKGANIDQPDKSGRTALHWASISGHMESAELLVENGANLMAET
SSKMTPLHGAAEGGRAELIRMFLEKGDKMVLVNARDIDNKTAFDLAMQGK
HAAVIKVLKEMGDPNAQGAACCVM*
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mRNA from alignment at chr3:924577..925719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03090.1 ID=NO03G03090.1|Name=NO03G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at chr3:924577..925719- (Nannochloropsis oceanica)
AAACGATAGGGGAGGCAACGAAGCCTCAAGCTCAGACGAGGACGATACGT
CAGGCCCATTTTTGTTTTTTTGGGTCGCGGCGCTCCGCCAAATCTCTTCT
TACCATCTGGGTGCAGCCACGCTACGGTGCGTCAAGAGAAAAGTACACAA
GCCAGAATTGACTGAGAGGGACGACTTATAATCATGCCAAACGACTCCGC
CCTGCACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGA
TTGATGGCGGGGAATTCGACGTTAATGAAGGTGCGTGGACAGTGGAATGG
GACCAAAAGGACGAAGCTGTCACGGGCAGCCCAAGACAGTATGTCTGATG
TTTCATTTCTCTTCATTATTTCACACCCTTTGCCACCACATACGCAGCGG
GAGCGGGTGAAAGAAGACCACTGCATCGAGCAGCTGGCAGCAATCACGTG
GAAATATGCCGGTACTTAATTGAGAAGGGTGCCAATATTGACCAGGTTCG
AAGTAAATCGATGGAGGCTTCGCTTAAACGAGTAGACACACAAGGATTTG
CAAACTGCGTGGGATGCTATGACAACATCTTGCATCTCTCTGCCTCCTTT
CTTTTCATTCTTTTCCTCCTTCCCCTCTGGCGCATCCCCTCTCAGACTTC
TTTCATTCCTCCCTCCCATGCTACTGTCACAATAGCCTGACAAGAGTGGG
CGAACTGCTTTGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGA
ATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAA
TGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGG
ATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATAT
CGATAACAAGACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTG
TCATTAAGGTGTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCT
TGCTGCGTCATGTAAGTCCTTGACTAACCATACAATATATCACGCGCGAA
GGAAGATTAGGGCAAACAGGAAAAGGGAAAGAGGAGGAGGCAAGAAAAAA
AGAAATAAATAAGAATTTGTGAAGCACAATGAAGGGTTTTGAT
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Coding sequence (CDS) from alignment at chr3:924577..925719-

>NO03G03090.1 ID=NO03G03090.1|Name=NO03G03090.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr3:924577..925719- (Nannochloropsis oceanica)
ATGCCAAACGACTCCGCCCTGCACAAGTCGTGCCATAATGGAGAGCTTGA
CGCTGTGCAGCGGCTGATTGATGGCGGGGAATTCGACGTTAATGAAGCGG
GAGCGGGTGAAAGAAGACCACTGCATCGAGCAGCTGGCAGCAATCACGTG
GAAATATGCCGGTACTTAATTGAGAAGGGTGCCAATATTGACCAGCCTGA
CAAGAGTGGGCGAACTGCTTTGCACTGGGCCAGCATCAGCGGACACATGG
AATCAGCAGAATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCGAGACC
TCCTCCAAAATGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGA
GCTCATCAGGATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGTGAATG
CCCGCGATATCGATAACAAGACGGCATTTGACTTGGCGATGCAGGGCAAG
CATGCGGCTGTCATTAAGGTGTTAAAGGAGATGGGAGACCCGAACGCGCA
GGGGGCGGCTTGCTGCGTCATGTAA
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Synonyms
Publications