NO03G03010.1, NO03G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03010.1
Unique NameNO03G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr3:902478..903246 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:902478..903246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03010.1 vs.
Match: EWM29735.1 (hypothetical protein Naga_100022g46 [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 7.200e-50
Identity = 104/137 (75.91%), Postives = 117/137 (85.40%), Query Frame = 0 
Query:    1 MFAARRVFARTLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAAAPAAASASNEAVSMADDKFSDYVSVPENMLKWEQSLNDPKAYE 138
            MFAARR+ A + ALRPA    T    QAPT++VRRT+AGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYL+SKLF+GG KA P+ VAA+ +A SAS+E +SMADDKFS+YV   ENMLKWEQSLNDPKAYE
Sbjct:    1 MFAARRIVAHSSALRPAFTHAT-GRAQAPTRVVRRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE 136
The following BLAST results are available for this feature:
BLAST of NO03G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29735.17.200e-5075.91hypothetical protein Naga_100022g46 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03010NO03G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03010.1NO03G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03010.1.cds1NO03G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03010.1.cds2NO03G03010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03010.1.cds3NO03G03010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03010.1 ID=NO03G03010.1|Name=NO03G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTGGCTCTGCGACCTGC
CATGGCTGTCGGCACCAGGTCAGGCGTCCAGGCCCCGACTCAGATCGTGC
GGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGGCCACGGGTTGGGAG
GGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAGGTGGTCTGCGGCAT
CATGGGGTTCTACACCACACTTTACCTCATCTCCAAGCTCTTTACGGGCG
GTGCCAAGGCCGTGCCTGAGGCGGTGGCGGCTGCCCCCGCGGCTGCGAGC
GCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAATTTTCCGATTACGT
GTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAGCCTGAACGATCCAA
AGGCGTACGAGTAA
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protein sequence of NO03G03010.1

>NO03G03010.1-protein ID=NO03G03010.1-protein|Name=NO03G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MFAARRVFARTLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWE
GEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAAAPAAAS
ASNEAVSMADDKFSDYVSVPENMLKWEQSLNDPKAYE*
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mRNA from alignment at chr3:902478..903246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03010.1 ID=NO03G03010.1|Name=NO03G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=769bp|location=Sequence derived from alignment at chr3:902478..903246+ (Nannochloropsis oceanica)
ATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTGGCTCTGCGACCTGC
CATGGCTGTCGGCACCAGGTCAGGCGTCCAGGTAAGAAGCAAAGAGTGTG
GGGGGGGGATATGAATGAGGCTCCACGCGCCTTTGTCCTGGCCTTGGTCC
TCATCCTCTCCTTCTCCGCATCTACCTACACAATTAGGCCCCGACTCAGA
TCGTGCGGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGGCCACGGGT
TGGGAGGGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAGGTGGTCTG
CGGCATCATGGGGTTCTACACCACACTTTACCTCATCTCCAAGCTCTTTA
CGGGCGGTGCCAAGGCCGTGCCTGAGGCGGGTACGAGAATTGGGGGAGAT
TTTGGGGAAATTGACTTACGTCTCTCCACGTTTTAAGTTTTGTTTGGGTA
CATCACTATGTTCTCCCCAACAGCTCTCCTTTCTCTTGTCTTGTAATTTG
GAGGGGGAATCCGGTTTAGTGGACCTCGATAAGATAACGTAGCAAGACCT
ACTGCTTTTCTTAACCTTCTTCCTTCCCCCTTCAACGAAATCCAATCTTC
CTCTCTACACTCTCTCTTCACAATGACAGTGGCGGCTGCCCCCGCGGCTG
CGAGCGCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAATTTTCCGAT
TACGTGTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAGCCTGAACGA
TCCAAAGGCGTACGAGTAA
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Coding sequence (CDS) from alignment at chr3:902478..903246+

>NO03G03010.1 ID=NO03G03010.1|Name=NO03G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr3:902478..903246+ (Nannochloropsis oceanica)
ATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTGGCTCTGCGACCTGC
CATGGCTGTCGGCACCAGGTCAGGCGTCCAGGCCCCGACTCAGATCGTGC
GGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGGCCACGGGTTGGGAG
GGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAGGTGGTCTGCGGCAT
CATGGGGTTCTACACCACACTTTACCTCATCTCCAAGCTCTTTACGGGCG
GTGCCAAGGCCGTGCCTGAGGCGGTGGCGGCTGCCCCCGCGGCTGCGAGC
GCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAATTTTCCGATTACGT
GTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAGCCTGAACGATCCAA
AGGCGTACGAGTAA
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Synonyms
Publications