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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:888330..891313 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02960.2 vs.
Match: EWM29751.1 (hypothetical protein Naga_100022g51 [Nannochloropsis gaditana]) HSP 1 Score: 424.9 bits (1091), Expect = 3.600e-115 Identity = 262/470 (55.74%), Postives = 306/470 (65.11%), Query Frame = 0
Query: 12 SIHTRLTEDCFRIYHEVEDVGKTVKATKRRARWTFSFGEKGQESEVVLVHSVVSGKKVITYNGHQIHHSDDMSRSFSHSWFEGNHALRVDITDIVEVGRGRSDKMYELTLDGVPFGVLPLKPVHLPSRRAEFDRRD---LSSSTTRPTGSLRENDSFEASDDFNPRATTSY---SNSKPRAVMKAGITTSLPFTMNAAPVVDLLGVGGEDFTGITSRHQQQPPPQQQQQQQAFDPFSGPTSGEQCADFSAGFNMAKGRANLTAHDLAKEFGSLSTASLPEASSAPAVVMPPLTYGENSLPAFHYNPGSVTNGNGGSSSSSGTSLALISLAKNDDSGEVDVDKVTASLVNLNNLLDDGTPSGTTSPTKLYSSVYADNRSLEEMKASRAARPPQVPARPIFIERTLPPRPPISPYA--------MLTSPLQQQQW---GPPPMHQVSPQPRGSAMMGGAKYVQQEQQQMQQQ 465
+ H EDC+R+YHEVEDVGKTV+ATKRRARWTFSFGE+GQE E+VL HSVVSGKK ITY+G QIHHS+++SR+FSHSWF+G+HALRVDITD+V+VGRGR+DKMYELTLDGVPFGVLPL+PVHLP R E + + S TTR RE D + FNPR S + S+P K G++ S + P VDLLG ED G+ S DPFSGP S EQ ADF+A FN AKGR+N TAHDL KEFG S P + MPPLTYG LP F Y G N S+ ++ AL+ +A DDSGEVDVDK TASLVNLNNLLDD SG+ SP+KLYSSVY DNRSLEE+KASRAAR PQ ARPIFI+RT PP SP A ML+SP+QQQ P P Q P G AMMGG KY+QQ+ Q++
Sbjct: 13 NFHPPKFEDCYRVYHEVEDVGKTVRATKRRARWTFSFGERGQEREIVLAHSVVSGKKTITYDGRQIHHSEELSRTFSHSWFDGDHALRVDITDLVDVGRGRNDKMYELTLDGVPFGVLPLRPVHLP-RLMEPNAQGPTAQGSVTTRKAPGQRETD-----EAFNPRGIHSVITRAGSRP----KLGMSHSQQRPTSVTPPVDLLGGWEEDGGGLAS-----------------DPFSGPASKEQFADFTASFNEAKGRSNATAHDLVKEFGGTSEVQ----ERTPPLSMPPLTYG-RPLPTFTYVQGPGAN----LSTDKRSTTALVRVATKDDSGEVDVDKATASLVNLNNLLDDEGASGSISPSKLYSSVYVDNRSLEEIKASRAARAPQPLARPIFIDRTPPPEIMTSPGAQPFFPGRGMLSSPMQQQHMMGGTPQPWQQPVETPTGPAMMGGGKYLQQQFTYQQRR 446
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02960.2 ID=NO03G02960.2|Name=NO03G02960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp
ATGTAAACAAAAAAATTCGTCTCCCTCTCCTTCTCTTTTCGCTTCTTCTT
ACCCGGACAACTCTCCTTCCCCAACCACTCTCATGCGCCCCAGCTTCCCC
GGCGACAAATACACACACCTCCATCACAACATCCACATTCACTTCCACCA
ACGTCTCCCCGATTCTCACTTGTTCTACACTTCCTGTTAAAACTTCTCTC
ACTACTGGAACTTCTTTCGAACACACGCCCGCAAGCTAGTGGAAAGTAAA
ATTCGCGCAAAATAGGAGGACAAGCGGCCCACACGAAAAAAAGGCCAGGA
GCACCGCTAGCTTGACACTAATCAGCACCCATCATAGCCATGAACAGCCA
CCAGCATGGGTCCAGGACGAGCAGCAACGCCCGCGCCACCCGATTCGGTA
AGCAGATTTAAGCATGGGCGGGTTTGTTGCTGTATTGCCCACCGGCGGGA
CAGGACACCCGTCCTCGTGGGAACTCATGGGAAGCAACAATTAGTAGATG
TAATGCTTGTGTTGGTGAATGGAGCACCATCCCTTCTCGTCTTCCGGCGC
GTTTTCAACCCTGGGGAGGGGAAAGACCGATGGTCTGACCAGCTCCCCCT
ACCGTCATCGAACAGATGACACACCCTGATTACCCACCCGCCCACATTTC
TATACACACGCGATTGACAGAGGATTGCTTCCGAATCTATCACGAGGTAG
AGGACGTGGGCAAGACGGTCAAGGCTACCAAACGCCGAGCACGCTGGACA
TTCTCATTCGGTGAAAAAGGACAGGAGAGCGAGGTGGTTCTAGTGCACTC
GGTCGTGTCGGGCAAAAAAGTTATCACCTACAATGGCCATCAAATCCACC
ACTCTGACGATATGAGTCGTTCCTTTAGCCATTCCTGGTTTGAGGGGAAT
CATGCTCTTCGCGTGGACATCACGGATATAGTGGAGGTGGGCCGCGGGCG
GAGCGACAAGATGTATGAGCTAACGTTGGACGGTGTTCCATTCGGCGTGC
TTCCCTTGAAGCCCGTTCACCTGCCAAGTCGCCGCGCCGAGTTCGACCGT
CGAGACCTCTCTTCATCTACCACCCGCCCTACGGGCTCTCTGCGTGAGAA
CGACAGCTTTGAGGCCTCCGATGATTTTAATCCTCGAGCAACCACCAGCT
ATAGCAACAGTAAGCCTCGAGCTGTCATGAAAGCGGGGATCACTACCTCC
CTCCCATTTACCATGAATGCCGCGCCCGTGGTGGATCTGTTGGGAGTTGG
AGGGGAGGATTTTACGGGCATCACCAGCAGGCACCAGCAGCAGCCGCCGC
CGCAGCAGCAGCAGCAGCAGCAGGCTTTCGATCCATTTTCAGGACCGACA
TCAGGTGAACAATGCGCTGACTTCTCCGCGGGGTTCAACATGGCCAAGGG
TCGAGCGAATCTGACTGCGCATGATTTGGCCAAGGAGTTTGGGAGCCTTT
CGACTGCCAGCTTGCCTGAAGCATCGTCAGCACCTGCGGTTGTGATGCCG
CCCTTGACATATGGTGAGAATTCTTTACCCGCGTTTCATTATAATCCTGG
TTCTGTCACGAACGGCAACGGTGGCAGTAGCAGTAGCAGCGGCACCAGCC
TGGCATTGATTAGCTTGGCTAAAAATGATGATTCGGGCGAAGTGGACGTG
GACAAGGTGACGGCTTCACTGGTGAATCTGAATAACCTCTTGGATGATGG
GACTCCCTCCGGCACCACTTCTCCTACCAAGCTATATTCCTCCGTCTACG
CCGATAATCGTAGCCTCGAGGAAATGAAGGCCTCCCGCGCAGCTCGCCCC
CCGCAAGTGCCCGCCCGACCCATCTTCATTGAGCGCACACTGCCCCCGCG
ACCGCCCATTTCACCCTACGCCATGCTAACCTCTCCGCTCCAGCAGCAGC
AGTGGGGTCCGCCGCCCATGCACCAGGTCAGCCCACAGCCAAGAGGTTCT
GCCATGATGGGGGGCGCCAAGTATGTGCAGCAGGAGCAGCAGCAGATGCA
GCAACAACTGCAGCTGCAGCAGCGGCATTATCCGCTACAGCATAACCTCC
AGCAGCAGCAACTGCTGGGAGGAATGGGTGGAGGGATGGGTGGAGGAGGG
ATGCAGCCGCCTTCAATATTGATGGGTGGTGGTGGTGGGGGGGGATGATG
GGAAGAGGCATGGCGGGAGGGATGGGAGGAGAACGGGGTTCAAACATGGG
GTCGGCGATGCAAGTCCCTGTTCAAATGCAAATGCAGATGGCACAGCAAC
AGCACCAGCACCACCAGCGGTATCAACAGCAGGGCATTCCGCGGTCACCG
AAAGATCCTTTTTTTGGCTTTTAAGGGATAAAAGGGAAGCGTTATAATGA
GGAAAACAGAAGGGCAAAACGGGAAAGAGAGAAGCTGAGGAGTTCGTATA
TGTACAAAACGAAGGGATTGAAGATAGGAATGCAACGACGGACTAAACAT
GCGGTAGAGCCTAGTCACACAAATAAAAGCCAAGAGAAAGAAATAATATG
ATATATGGAATA back to topprotein sequence of NO03G02960.2 >NO03G02960.2-protein ID=NO03G02960.2-protein|Name=NO03G02960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MTHPDYPPAHISIHTRLTEDCFRIYHEVEDVGKTVKATKRRARWTFSFGE
KGQESEVVLVHSVVSGKKVITYNGHQIHHSDDMSRSFSHSWFEGNHALRV
DITDIVEVGRGRSDKMYELTLDGVPFGVLPLKPVHLPSRRAEFDRRDLSS
STTRPTGSLRENDSFEASDDFNPRATTSYSNSKPRAVMKAGITTSLPFTM
NAAPVVDLLGVGGEDFTGITSRHQQQPPPQQQQQQQAFDPFSGPTSGEQC
ADFSAGFNMAKGRANLTAHDLAKEFGSLSTASLPEASSAPAVVMPPLTYG
ENSLPAFHYNPGSVTNGNGGSSSSSGTSLALISLAKNDDSGEVDVDKVTA
SLVNLNNLLDDGTPSGTTSPTKLYSSVYADNRSLEEMKASRAARPPQVPA
RPIFIERTLPPRPPISPYAMLTSPLQQQQWGPPPMHQVSPQPRGSAMMGG
AKYVQQEQQQMQQQLQLQQRHYPLQHNLQQQQLLGGMGGGMGGGGMQPPS
ILMGGGGGGG* back to topmRNA from alignment at chr3:888330..891313+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02960.2 ID=NO03G02960.2|Name=NO03G02960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2984bp|location=Sequence derived from alignment at chr3:888330..891313+ (Nannochloropsis oceanica)
ATGTAAACAAAAAAATTCGTCTCCCTCTCCTTCTCTTTTCGCTTCTTCTT
ACCCGGACAACTCTCCTTCCCCAACCACTCTCATGCGCCCCAGCTTCCCC
GGCGACAAATACACACACCTCCATCACAACATCCACATTCACTTCCACCA
ACGTCTCCCCGATTCTCACTTGTTCTACACTTCCTGTTAAAACTTCTCTC
ACTACTGGAACTTCTTTCGAACACACGCCCGCAAGCTAGTGGAAAGTAAA
ATTCGCGCAAAATAGGTAAGAAGGGGGGGGGGGAAGAGGGGGCGATATGA
TATGTGCTCGCCGCAAGGCTCGGTGTGTAAGACATGCGTGGCTTGACGTG
TACCCTCCTCACATCATCGATGGAGGCCGCTGCATAGTATCGACTCCACC
ATCAAACACTCCTTTCGCGCACTCAACCCTGCCACCAATCGATCAACGTA
CACAATACAGGAGGACAAGCGGCCCACACGAAAAAAAGGCCAGGAGCACC
GCTAGCTTGACACTAATCAGCACCCATCATAGCCATGAACAGCCACCAGC
ATGGGTCCAGGACGAGCAGCAACGCCCGCGCCACCCGATTCGGTAAGCAG
ATTTAAGCATGGGCGGGTTTGTTGCTGTATTGCCCACCGGCGGGACAGGA
CACCCGTCCTCGTGGGAACTCATGGGAAGCAACAATTAGTAGATGTAATG
CTTGTGTTGGTGAATGGAGCACCATCCCTTCTCGTCTTCCGGCGCGTTTT
CAACCCTGGGGAGGGGAAAGACCGATGGTCTGACCAGCTCCCCCTACCGT
CATCGAACAGATGACACACCCTGATTACCCACCCGCCCACATTTCTATAC
ACACGCGATTGACAGAGGATTGCTTCCGAATCTATCACGAGGTAGAGGAC
GTGGGCAAGACGGTCAAGGCTACCAAACGCCGAGCACGCTGGACATTCTC
ATTCGGTGAAAAAGGACAGGAGAGCGTAAGTGTCTAGAGAATAGCAGCTA
TGGTGCTCTCTCGCGTCCAGCACACAGAACACGCGCCACCTTCTTGAACA
AATGCACTCACTAGCGATGTAAAGCAAATGTTTTTTTTAACTGAGCTTAT
AATTCTTGATTCTTTCCCATACGCCCTCCTAACCGCTCACAGGAGGTGGT
TCTAGTGCACTCGGTCGTGTCGGGCAAAAAAGTTATCACCTACAATGGCC
ATCAAATCCACCACTCTGACGATATGAGTCGTTCCTTTAGCCATTCCTGG
TTTGAGGGGAATCATGCTCTTCGCGTGGACATCACGGATATAGTGGAGGT
GGGCCGCGGGCGGAGCGACAAGATGTATGAGCTAACGGTATGTTATTGTT
TTCATCCCGTAAAGTGTGTGTATTGCGAGATTGCATCGTTTCAGATCATA
TAGTCATCCAAGTGACTCAAATCCCTTGTGTTTACTTGAAACAACAGTTG
GACGGTGTTCCATTCGGCGTGCTTCCCTTGAAGCCCGTTCACCTGCCAAG
TCGCCGCGCCGAGTTCGACCGTCGAGACCTCTCTTCATCTACCACCCGCC
CTACGGGCTCTCTGCGTGAGAACGACAGCTTTGAGGCCTCCGATGATTTT
AATCCTCGAGCAACCACCAGCTATAGCAACAGTAAGCCTCGAGCTGTCAT
GAAAGCGGGGATCACTACCTCCCTCCCATTTACCATGAATGCCGCGCCCG
TGGTGGATCTGTTGGGAGTTGGAGGGGAGGATTTTACGGGCATCACCAGC
AGGCACCAGCAGCAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGGCTTT
CGATCCATTTTCAGGACCGACATCAGGTGAACAATGCGCTGACTTCTCCG
CGGGGTTCAACATGGCCAAGGGTCGAGCGAATCTGACTGCGCATGATTTG
GCCAAGGAGTTTGGGAGCCTTTCGACTGCCAGCTTGCCTGAAGCATCGTC
AGCACCTGCGGTTGTGATGCCGCCCTTGACATATGGTGAGAATTCTTTAC
CCGCGTTTCATTATAATCCTGGTTCTGTCACGAACGGCAACGGTGGCAGT
AGCAGTAGCAGCGGCACCAGCCTGGCATTGATTAGCTTGGCTAAAAATGA
TGATTCGGGCGAAGTGGACGTGGACAAGGTGACGGCTTCACTGGTGAATC
TGAATAACCTCTTGGATGATGGGACTCCCTCCGGCACCACTTCTCCTACC
AAGCTATATTCCTCCGTCTACGCCGATAATCGTAGCCTCGAGGAAATGAA
GGCCTCCCGCGCAGCTCGCCCCCCGCAAGTGCCCGCCCGACCCATCTTCA
TTGAGCGCACACTGCCCCCGCGACCGCCCATTTCACCCTACGCCATGCTA
ACCTCTCCGCTCCAGCAGCAGCAGTGGGGTCCGCCGCCCATGCACCAGGT
CAGCCCACAGCCAAGAGGTTCTGCCATGATGGGGGGCGCCAAGTATGTGC
AGCAGGAGCAGCAGCAGATGCAGCAACAACTGCAGCTGCAGCAGCGGCAT
TATCCGCTACAGCATAACCTCCAGCAGCAGCAACTGCTGGGAGGAATGGG
TGGAGGGATGGGTGGAGGAGGGATGCAGCCGCCTTCAATATTGATGGGTG
GTGGTGGTGGGGGGGGATGATGGGAAGAGGCATGGCGGGAGGGATGGGAG
GAGAACGGGGTTCAAACATGGGGTCGGCGATGCAAGTCCCTGTTCAAATG
CAAATGCAGATGGCACAGCAACAGCACCAGCACCACCAGCGGTATCAACA
GCAGGGCATTCCGCGGTCACCGAAAGATCCTTTTTTTGGCTTTTAAGGGA
TAAAAGGGAAGCGTTATAATGAGGAAAACAGAAGGGCAAAACGGGAAAGA
GAGAAGCTGAGGAGTTCGTATATGTACAAAACGAAGGGATTGAAGATAGG
AATGCAACGACGGACTAAACATGCGGTAGAGCCTAGTCACACAAATAAAA
GCCAAGAGAAAGAAATAATATGATATATGGAATA back to topCoding sequence (CDS) from alignment at chr3:888330..891313+ >NO03G02960.2 ID=NO03G02960.2|Name=NO03G02960.2|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr3:888330..891313+ (Nannochloropsis oceanica)
ATGACACACCCTGATTACCCACCCGCCCACATTTCTATACACACGCGATT
GACAGAGGATTGCTTCCGAATCTATCACGAGGTAGAGGACGTGGGCAAGA
CGGTCAAGGCTACCAAACGCCGAGCACGCTGGACATTCTCATTCGGTGAA
AAAGGACAGGAGAGCGAGGTGGTTCTAGTGCACTCGGTCGTGTCGGGCAA
AAAAGTTATCACCTACAATGGCCATCAAATCCACCACTCTGACGATATGA
GTCGTTCCTTTAGCCATTCCTGGTTTGAGGGGAATCATGCTCTTCGCGTG
GACATCACGGATATAGTGGAGGTGGGCCGCGGGCGGAGCGACAAGATGTA
TGAGCTAACGTTGGACGGTGTTCCATTCGGCGTGCTTCCCTTGAAGCCCG
TTCACCTGCCAAGTCGCCGCGCCGAGTTCGACCGTCGAGACCTCTCTTCA
TCTACCACCCGCCCTACGGGCTCTCTGCGTGAGAACGACAGCTTTGAGGC
CTCCGATGATTTTAATCCTCGAGCAACCACCAGCTATAGCAACAGTAAGC
CTCGAGCTGTCATGAAAGCGGGGATCACTACCTCCCTCCCATTTACCATG
AATGCCGCGCCCGTGGTGGATCTGTTGGGAGTTGGAGGGGAGGATTTTAC
GGGCATCACCAGCAGGCACCAGCAGCAGCCGCCGCCGCAGCAGCAGCAGC
AGCAGCAGGCTTTCGATCCATTTTCAGGACCGACATCAGGTGAACAATGC
GCTGACTTCTCCGCGGGGTTCAACATGGCCAAGGGTCGAGCGAATCTGAC
TGCGCATGATTTGGCCAAGGAGTTTGGGAGCCTTTCGACTGCCAGCTTGC
CTGAAGCATCGTCAGCACCTGCGGTTGTGATGCCGCCCTTGACATATGGT
GAGAATTCTTTACCCGCGTTTCATTATAATCCTGGTTCTGTCACGAACGG
CAACGGTGGCAGTAGCAGTAGCAGCGGCACCAGCCTGGCATTGATTAGCT
TGGCTAAAAATGATGATTCGGGCGAAGTGGACGTGGACAAGGTGACGGCT
TCACTGGTGAATCTGAATAACCTCTTGGATGATGGGACTCCCTCCGGCAC
CACTTCTCCTACCAAGCTATATTCCTCCGTCTACGCCGATAATCGTAGCC
TCGAGGAAATGAAGGCCTCCCGCGCAGCTCGCCCCCCGCAAGTGCCCGCC
CGACCCATCTTCATTGAGCGCACACTGCCCCCGCGACCGCCCATTTCACC
CTACGCCATGCTAACCTCTCCGCTCCAGCAGCAGCAGTGGGGTCCGCCGC
CCATGCACCAGGTCAGCCCACAGCCAAGAGGTTCTGCCATGATGGGGGGC
GCCAAGTATGTGCAGCAGGAGCAGCAGCAGATGCAGCAACAACTGCAGCT
GCAGCAGCGGCATTATCCGCTACAGCATAACCTCCAGCAGCAGCAACTGC
TGGGAGGAATGGGTGGAGGGATGGGTGGAGGAGGGATGCAGCCGCCTTCA
ATATTGATGGGTGGTGGTGGTGGGGGGGGATGA back to top
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