NO03G02600.1, NO03G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02600.1
Unique NameNO03G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr3:744894..746309 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:744894..746309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02600.1 vs.
Match: EWM29701.1 (hypothetical protein Naga_100114g20 [Nannochloropsis gaditana])

HSP 1 Score: 511.5 bits (1316), Expect = 2.700e-141
Identity = 289/445 (64.94%), Postives = 336/445 (75.51%), Query Frame = 0 
Query:   28 LLMLLQQDTLAFLHPKAFAFSSTAAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMATMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVALISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQSGGGGLQLNIFAKGVNPKEAVEAIRRESGGSR-IVLVQHARLFGAANPFTVGGKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLAEAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472
            +L LLQQ    FL P       + A     R  + +V MM+ +G       G VAVVVGY+ G AQL+AAKMAT  +   VRAIL+ G      A   P NVQVT K+L+S+ ++DLAGASVAL+SLDKGP  E GADP NYL LPT+L+ I    KV++AAYANDT+  G+ GGG L LNIFA+GV+PKE VEA R    GS  IVL QH RLFG     T    A Q LPFV GPLQ+PV+EES+AKQNILLALGSSLSRN +AAT+RS LAE+M+RA  ++ SI DFSVVSLEGQAP  GDWEQ +AGLDTRGGVTVFEKVLAA+ERVDL VLQ+WL +DFGAGLSTLAISRVLNSPKP+IV  T  G+DI+WQFV KDLK++GSGRW IQLD+ +++IKILRE+A G MLTEALPGEEELLQRFSAAINRLVYSRKLSKRR
Sbjct:   91 VLTLLQQGAWGFLAPPRTTLKDSCAI----RAGKSLV-MMSAEGM------GKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRVGGG-LNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
The following BLAST results are available for this feature:
BLAST of NO03G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29701.12.700e-14164.94hypothetical protein Naga_100114g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02600NO03G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02600.1NO03G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02600.1.cds1NO03G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02600.1 ID=NO03G02600.1|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTCCAG
ATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGCAGC
AAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCCACA
GCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGATGAT
GGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCGTGG
TGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATGGCC
ACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGATGA
TAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCTACA
AAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTGGCT
CTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCCAGG
CAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGGCCA
AGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAAAGC
GGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCCGAA
GGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCGTGC
TTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTTGGG
GGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAGGCC
TGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGGGGA
GCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTGGCT
GAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTTCAG
CGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGCAGC
AGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAGGTA
CTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTTGAA
GGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGTTGA
ACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGATATC
ATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAGGTG
GTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAGAAG
ACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAGTTG
CTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAAGCT
AAGTAAACGACGGTAA
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protein sequence of NO03G02600.1

>NO03G02600.1-protein ID=NO03G02600.1-protein|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MASSTRLSAFRALFASRSLPSLLPLALLLMLLQQDTLAFLHPKAFAFSST
AAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMA
TMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVA
LISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQS
GGGGLQLNIFAKGVNPKEAVEAIRRESGGSRIVLVQHARLFGAANPFTVG
GKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLA
EAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKV
LAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADI
IWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEEL
LQRFSAAINRLVYSRKLSKRR*
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mRNA from alignment at chr3:744894..746309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02600.1 ID=NO03G02600.1|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr3:744894..746309+ (Nannochloropsis oceanica)
ATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTCCAG
ATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGCAGC
AAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCCACA
GCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGATGAT
GGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCGTGG
TGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATGGCC
ACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGATGA
TAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCTACA
AAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTGGCT
CTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCCAGG
CAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGGCCA
AGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAAAGC
GGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCCGAA
GGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCGTGC
TTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTTGGG
GGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAGGCC
TGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGGGGA
GCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTGGCT
GAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTTCAG
CGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGCAGC
AGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAGGTA
CTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTTGAA
GGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGTTGA
ACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGATATC
ATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAGGTG
GTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAGAAG
ACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAGTTG
CTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAAGCT
AAGTAAACGACGGTAA
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Coding sequence (CDS) from alignment at chr3:744894..746309+

>NO03G02600.1 ID=NO03G02600.1|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr3:744894..746309+ (Nannochloropsis oceanica)
ATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTCCAG
ATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGCAGC
AAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCCACA
GCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGATGAT
GGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCGTGG
TGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATGGCC
ACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGATGA
TAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCTACA
AAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTGGCT
CTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCCAGG
CAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGGCCA
AGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAAAGC
GGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCCGAA
GGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCGTGC
TTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTTGGG
GGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAGGCC
TGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGGGGA
GCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTGGCT
GAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTTCAG
CGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGCAGC
AGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAGGTA
CTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTTGAA
GGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGTTGA
ACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGATATC
ATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAGGTG
GTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAGAAG
ACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAGTTG
CTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAAGCT
AAGTAAACGACGGTAA
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Synonyms
Publications