NO03G02330.1, NO03G02330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02330.1
Unique Name	NO03G02330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3059
Alignment location	chr3:676145..679414 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:676145..679414 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G02330.1 vs.
Match: EWM29666.1 (ras-related protein rab-5b [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 1.600e-76
Identity = 147/202 (72.77%), Postives = 170/202 (84.16%), Query Frame = 0

Query:   44 MTTRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKG--TCC 244
            M  R REIKLV++GDSGVGKSSLVLRFVTQSFKP+SESTIGASFMSKV+ELDGQTVKVQIWDTAGQEKY SLAPMYYRGAAAA+VVYD+TR ESF TLQRWVSEL+E+ P+D+ IM+AGNK DLE +RQVA  +AE YA+SIGA Y+ETSAKDD+ V+DLFLSLC++VP   P+ G   R GIYL+      K ++G  TCC
Sbjct:    1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202

The following BLAST results are available for this feature:

BLAST of NO03G02330.1 vs.

BLAST of NO03G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29666.1	1.600e-76	72.77	ras-related protein rab-5b [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02330	NO03G02330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02330.1	NO03G02330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02330.1.cds1	NO03G02330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02330.1.cds2	NO03G02330.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02330.1.cds3	NO03G02330.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:676145..679414-
coding sequence from alignment at chr3:676145..679414-

mRNA sequence

>NO03G02330.1 ID=NO03G02330.1|Name=NO03G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp
CTCACGTATAGACGCTATGTACTTTATTTGCTTTTTATCATCATCACAAC
CCCTCCATCCCTGTCCCGCCCTCACACACTCCCTCCCTCATATCCTACTC
CCCCTGATTCTCAACCTATACTCTTCCGCAGGCGCCGGCAAAGGGAAAGG
GACGGGCCTTCCTACCCTCTCAAACAAATATAATACCTCCACATCCTTGG
TTAACGGAATGATGATATCCCGGTAGATGGCCGCAATGACGTCAGGCTCG
ACTTTGCACTCCTCCGTCTCGCCTGTGATGTCCTGCCCGTACGTGCTCGC
CTTCAGCTTGGCCCGTTCCAACACTCGGGCTTCTACCGCCGTGTTGGTCA
GCAAAGCCATGACCCCATCGACATCATCAGCAGCCACAAGCGCACGGTAG
CGAGCCTCACTTTCTAGAAATTTGGCCTCCGCCACGAATTTTCCCAAGTG
GATCCGACGGGATATGGCCTGCAATAACGTGATGTCGGCTAGAACGGACG
AGCCATGCTGCTCATCATCCCCTTCCTTGCACACAGCGGAGACAATCTCA
TTGATATATAAATCGAGGATTTGGGCGTTCACATCTACTGTGTTCGGGGC
GAGCAACGCTGGGAATTGCAGAGGCGTGAGGATTGGGTTGGGCAGGTGCT
CGGGAAAGAATGCATGCTCTTCTGGGCTCGTGTAACGACGGACTTTCCCG
TGTAATTTTTCGGTTTCTAGTAGGAGATATTCGAGGAAGGAGAGGGAGTT
GAGGAAGGTGTAGTCCGGGATGGAAGGGTCGAGTTGCAGAATGCCTTTAA
GGTAGATGGCCTCGTTGCGACGGAATTGAGCGCGTTCGATCAGGGCAAAG
ATGATGGAATCTTCCTGTCGAATCAAGGTGCTACGGATGCTGTCCAAGGA
CATGACATCCGCTGTGGTGGTGCTTGCCAGGGCGCCGTGGCCGGTGTGGG
TGGAGGCAGTGGGGGGGGAGGAAGTGGGGAAAGAGGTTGCGGTTGCCTCA
TTGGGAGTATGAGTGATGGAGGGGACCCCCCAGGTTAAGCGCGCGGATGT
GCTGACAGCCTCCTCGTGACCGCCAACCTCGGCAGCGGCTGCGGCCAGTT
TGAAGCCACCCCCGGAGTAGAAGATGGGAGTGGAAGCGCAGGGTGGCGGG
GAGGCACAGGCTGGCGGGGACCGTTGCTGCTGATGAAGGTGATCCATGCT
CAAAAGAGGGATAAAAGCCTGGGTGAGGGGGAAGATGGGCAGCAGCACGA
GTACGAACAGCAGCAGGAGCGTGGATGTGTGGACGGAAGCGTTGGCGGGG
GTTCTCATGGACTGTGGTAGATTTATTGAGTGCTTGTCTGTAGTAAAAGG
GCGACTCAAGGCGAGAAAGCCCAGTTGAGCCTGTCTTGCGTACGTGTGTG
GAGAGAACGGGGGCGTGAATTGACGTAGTGGTCTGATTTTTGGGGCGCGG
AGGGGAAGGAGAGAGGAGGTCGTCCGACGATTCGGCGGTTGTTTGGACCT
TCGACTCGCGGGAAGCCTTCCAAAGCTGTTTGCGTTTGAGATAAACTTCC
TCTGCATGTATTGCCGTAACCAGGCCCAGCCCACAACTGCATAGCCAAAA
ATTATATCGTCGACGCGAGCGTAAAGATGCCGCGGCAAGGCTGAGGCCGG
GATTTGAGAACGCGCGTGGCTAGAGATTGGCATTGCCGCGACAGAACGAA
ACCCTGCTCCTCCCCCTCCTCCTGACACGCCTAGACATGCCACGCAAGCA
TTCGCTACCCTTCGTGAGGAGGGGGAAAGTCGCGAGCAAAGACTGTGGAG
CCGCGTTCTGGTTGCCGGAGGATTCCGTTCAAAGTTTGTGCTTTGCTTTC
ACGCTGTCAGGTGTCGCGTGGGCCCGCCCTGTTATGCGCCCCTTGCTCCA
CTTTATACCTTCAAAGTCAACAATCATTCACGGCTTATCAGTATCCGCGT
ACTGTCGCGCGTGTGCATGATTACACACACTCCTGCCATCCTCACTCTTG
CACTCTTCCCTTCTCTTTGTACGGCAGACGTAAAAAGACAGGGGTACGTC
TCCACTGCTTCTCCCGCTTACGATTCTAACCCGCACGCCCGCACCATGAC
GACCCGTGCCCGAGAAATCAAACTCGTCCTCCTTGGGGACTCTGGCGTCG
GTAAAAGCTCCCTCGTTCTGCGATTCGTCACTCAATCCTTCAAACCCTAC
TCGGAGAGCACTATTGGGGCCAGCTTCATGAGCAAAGTGGTTGAATTGGA
CGGACAGACGGTCAAGGTGCAGATTTGGGACACCGCCGGACAGGAGAAAT
ACCACAGTCTGGCACCTATGTACTACCGGGGGGCGGCGGCGGCGGTTGTA
GTATACGATTTGACAAGGGCGGAAAGCTTTGCCACCCTCCAACGTTGGGT
CAGCGAGCTCCGCGAACGAAACCCGAAGGACATGGAAATTATGATTGCCG
GCAACAAGAACGACCTGGAGTCCGAGCGTCAAGTCGCTCGAAGCGATGCG
GAGGTATACGCCAAAAGCATTGGGGCCGGGTATGTGGAGACATCGGCAAA
GGACGACGTGGGGGTGCGTGACTTGTTCTTGTCGTTGTGCCGCAAGGTCC
CTGGGCCCATGCCCTCGACGGGGGAAACGGCGCGAGGAGGGATTTATCTG
GCCTCGGAGACACAGGGAGAGAAGGAGAGAAAGGGGACGTGTTGTTAGGA
GTGGCAAGGAGGGGAGGGGGCGGGGAGGAAGTGTGGAAAAGCAACGTGTA
TATAGCCGTAGAGTTTGAATTGATTTGGTGCGCGTGGTTGTTATGATCAT
GGTGTTGGTTGGGCACGTCCCATTTCCTGGTCATGTATACATATAGATAT
ATATGTATATATACAGATTTCTATAAACGGTACTGATGCTTAGTCATCGA
TGGTTTGTGTGTGAGTGTAGCTGGGAAAGTGGGGGGAAGAGGGAGAGAAA
GTGTGGAAAGAAACAAGGAGACAGAAAAAGAGAAATCGGGAGATGTCTCT
CCTTCCCTCTCTTCATTTGTCGCATGCATACACACATACATTATTGTCTC
GTCTAAGGA

protein sequence of NO03G02330.1

>NO03G02330.1-protein ID=NO03G02330.1-protein|Name=NO03G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MITHTPAILTLALFPSLCTADVKRQGYVSTASPAYDSNPHARTMTTRARE
IKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVK
VQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRE
RNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGV
RDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC*

mRNA from alignment at chr3:676145..679414-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02330.1 ID=NO03G02330.1|Name=NO03G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3270bp|location=Sequence derived from alignment at chr3:676145..679414- (Nannochloropsis oceanica)
CTCACGTATAGACGCTATGTACTTTATTTGCTTTTTATCATCATCACAAC
CCCTCCATCCCTGTCCCGCCCTCACACACTCCCTCCCTCATATCCTACTC
CCCCTGATTCTCAACCTATACTCTTCCGCAGGCGCCGGCAAAGGGAAAGG
GACGGGCCTTCCTACCCTCTCAAACAAATATAATACCTCCACATCCTTGG
TTAACGGAATGATGATATCCCGGTAGATGGCCGCAATGACGTCAGGCTCG
ACTTTGCACTCCTCCGTCTCGCCTGTGATGTCCTGCCCGTACGTGCTCGC
CTTCAGCTTGGCCCGTTCCAACACTCGGGCTTCTACCGCCGTGTTGGTCA
GCAAAGCCATGACCCCATCGACATCATCAGCAGCCACAAGCGCACGGTAG
CGAGCCTCACTTTCTAGAAATTTGGCCTCCGCCACGAATTTTCCCAAGTG
GATCCGACGGGATATGGCCTGCAATAACGTGATGTCGGCTAGAACGGACG
AGCCATGCTGCTCATCATCCCCTTCCTTGCACACAGCGGAGACAATCTCA
TTGATATATAAATCGAGGATTTGGGCGTTCACATCTACTGTGTTCGGGGC
GAGCAACGCTGGGAATTGCAGAGGCGTGAGGATTGGGTTGGGCAGGTGCT
CGGGAAAGAATGCATGCTCTTCTGGGCTCGTGTAACGACGGACTTTCCCG
TGTAATTTTTCGGTTTCTAGTAGGAGATATTCGAGGAAGGAGAGGGAGTT
GAGGAAGGTGTAGTCCGGGATGGAAGGGTCGAGTTGCAGAATGCCTTTAA
GGTAGATGGCCTCGTTGCGACGGAATTGAGCGCGTTCGATCAGGGCAAAG
ATGATGGAATCTTCCTGTCGAATCAAGGTGCTACGGATGCTGTCCAAGGA
CATGACATCCGCTGTGGTGGTGCTTGCCAGGGCGCCGTGGCCGGTGTGGG
TGGAGGCAGTGGGGGGGGAGGAAGTGGGGAAAGAGGTTGCGGTTGCCTCA
TTGGGAGTATGAGTGATGGAGGGGACCCCCCAGGTTAAGCGCGCGGATGT
GCTGACAGCCTCCTCGTGACCGCCAACCTCGGCAGCGGCTGCGGCCAGTT
TGAAGCCACCCCCGGAGTAGAAGATGGGAGTGGAAGCGCAGGGTGGCGGG
GAGGCACAGGCTGGCGGGGACCGTTGCTGCTGATGAAGGTGATCCATGCT
CAAAAGAGGGATAAAAGCCTGGGTGAGGGGGAAGATGGGCAGCAGCACGA
GTACGAACAGCAGCAGGAGCGTGGATGTGTGGACGGAAGCGTTGGCGGGG
GTTCTCATGGACTGTGGTAGATTTATTGAGTGCTTGTCTGTAGTAAAAGG
GCGACTCAAGGCGAGAAAGCCCAGTTGAGCCTGTCTTGCGTACGTGTGTG
GAGAGAACGGGGGCGTGAATTGACGTAGTGGTCTGATTTTTGGGGCGCGG
AGGGGAAGGAGAGAGGAGGTCGTCCGACGATTCGGCGGTTGTTTGGACCT
TCGACTCGCGGGAAGCCTTCCAAAGCTGTTTGCGTTTGAGATAAACTTCC
TCTGCATGTATTGCCGTAACCAGGCCCAGCCCACAACTGCATAGCCAAAA
ATTATATCGTCGACGCGAGCGTAAAGATGCCGCGGCAAGGCTGAGGCCGG
GATTTGAGAACGCGCGTGGCTAGAGATTGGCATTGCCGCGACAGAACGAA
ACCCTGCTCCTCCCCCTCCTCCTGACACGCCTAGACATGCCACGCAAGCA
TTCGCTACCCTTCGTGAGGAGGGGGAAAGTCGCGAGCAAAGACTGTGGAG
CCGCGTTCTGGTTGCCGGAGGATTCCGTTCAAAGTTTGTGCTTTGCTTTC
ACGCTGTCAGGTGTCGCGTGGGCCCGCCCTGTTATGCGCCCCTTGCTCCA
CTTTATACCTTCAAAGTCAACAATCATTCACGGCTTATCAGTATCCGCGT
ACTGTCGCGCGTGTGCATGATTACACACACTCCTGCCATCCTCACTCTTG
CACTCTTCCCTTCTCTTTGTACGGCAGACGTAAAAAGACAGGGGTACGTC
TCCACTGCTTCTCCCGCTTACGATTCTAACCCGCACGCCCGCACCATGAC
GACCCGTGCCCGAGAAATCAAACTCGTCCTCCTTGGGGACTCTGGCGTCG
GTAAAAGCTCCCTCGTTCTGCGATTCGTCACTCAATCCTTCAAACCCTAC
TCGGAGAGCACTATTGGGGCCAGCTTCATGAGCAAAGTGGTTGAATTGGA
CGGACAGACGGTCAAGGTAGACCTAAAAAGGGAGGGATCCTTACAGTGAG
AAAGATATGCACGTCTTGTCGTTCATTCGCACCAAAAGCTAATCTTTCAC
TCCTTTTTTGGGTACCACTCCCCTTCCTTACAGGTGCAGATTTGGGACAC
CGCCGGACAGGAGAAATACCACAGTCTGGCACCTATGTACTACCGGGGGG
CGGCGGCGGCGGTTGTAGTATACGATTTGACAAGGGCGGAAAGGTGAGTG
TGTGCGGAGTTTTCAGTAAACCCGGGATTCATGCATGCAATTACTCATCT
CCATCTCTTGCTCCCTCCCTCCCTCCCCTCTCGACAGCTTTGCCACCCTC
CAACGTTGGGTCAGCGAGCTCCGCGAACGAAACCCGAAGGACATGGAAAT
TATGATTGCCGGCAACAAGAACGACCTGGAGTCCGAGCGTCAAGTCGCTC
GAAGCGATGCGGAGGTATACGCCAAAAGCATTGGGGCCGGGTATGTGGAG
ACATCGGCAAAGGACGACGTGGGGGTGCGTGACTTGTTCTTGTCGTTGTG
CCGCAAGGTCCCTGGGCCCATGCCCTCGACGGGGGAAACGGCGCGAGGAG
GGATTTATCTGGCCTCGGAGACACAGGGAGAGAAGGAGAGAAAGGGGACG
TGTTGTTAGGAGTGGCAAGGAGGGGAGGGGGCGGGGAGGAAGTGTGGAAA
AGCAACGTGTATATAGCCGTAGAGTTTGAATTGATTTGGTGCGCGTGGTT
GTTATGATCATGGTGTTGGTTGGGCACGTCCCATTTCCTGGTCATGTATA
CATATAGATATATATGTATATATACAGATTTCTATAAACGGTACTGATGC
TTAGTCATCGATGGTTTGTGTGTGAGTGTAGCTGGGAAAGTGGGGGGAAG
AGGGAGAGAAAGTGTGGAAAGAAACAAGGAGACAGAAAAAGAGAAATCGG
GAGATGTCTCTCCTTCCCTCTCTTCATTTGTCGCATGCATACACACATAC
ATTATTGTCTCGTCTAAGGA

Coding sequence (CDS) from alignment at chr3:676145..679414-

>NO03G02330.1 ID=NO03G02330.1|Name=NO03G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr3:676145..679414- (Nannochloropsis oceanica)
ATGATTACACACACTCCTGCCATCCTCACTCTTGCACTCTTCCCTTCTCT
TTGTACGGCAGACGTAAAAAGACAGGGGTACGTCTCCACTGCTTCTCCCG
CTTACGATTCTAACCCGCACGCCCGCACCATGACGACCCGTGCCCGAGAA
ATCAAACTCGTCCTCCTTGGGGACTCTGGCGTCGGTAAAAGCTCCCTCGT
TCTGCGATTCGTCACTCAATCCTTCAAACCCTACTCGGAGAGCACTATTG
GGGCCAGCTTCATGAGCAAAGTGGTTGAATTGGACGGACAGACGGTCAAG
GTGCAGATTTGGGACACCGCCGGACAGGAGAAATACCACAGTCTGGCACC
TATGTACTACCGGGGGGCGGCGGCGGCGGTTGTAGTATACGATTTGACAA
GGGCGGAAAGCTTTGCCACCCTCCAACGTTGGGTCAGCGAGCTCCGCGAA
CGAAACCCGAAGGACATGGAAATTATGATTGCCGGCAACAAGAACGACCT
GGAGTCCGAGCGTCAAGTCGCTCGAAGCGATGCGGAGGTATACGCCAAAA
GCATTGGGGCCGGGTATGTGGAGACATCGGCAAAGGACGACGTGGGGGTG
CGTGACTTGTTCTTGTCGTTGTGCCGCAAGGTCCCTGGGCCCATGCCCTC
GACGGGGGAAACGGCGCGAGGAGGGATTTATCTGGCCTCGGAGACACAGG
GAGAGAAGGAGAGAAAGGGGACGTGTTGTTAG

Synonyms

Publications