NO03G02290.1, NO03G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02290.1
Unique NameNO03G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1560
Alignment locationchr3:668883..670442 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:668883..670442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02290.1 vs.
Match: EWM29672.1 (peptidase s28 family protein [Nannochloropsis gaditana])

HSP 1 Score: 687.2 bits (1772), Expect = 4.000e-194
Identity = 333/495 (67.27%), Postives = 390/495 (78.79%), Query Frame = 0 
Query:   11 LVLFTFLLGLCPVQAESWFPPERCRGGTLWQDFIARHPHAAASPYAHAHTWDAPIDHFNADDTSTFKQRYFFNDKFFQPLANSSNNLVFLMIGGEGTLQGPPGGFVADLGKEHSALLVALEHRFYGESFPKYDMSTEALSQYLTVNQALADLAAFTDYLQNSKFPNVPLCFFTIGGSYPGALASWYRIVYPDKTIGSLSSSGVVNSILDFPQFDRYVARAIGESCAGRLRNVTHAFEDALRIPAAACVTKGLFGCDCEMWDVDFFYMLADAAAMVNQYGRKEELCSF-LEGLEKDEEGRRKEPPSEFELVWRFANFTNRYYGPQFGASCFYDSRCAGDVSKATLNERSWRWQKCSELAYFQVAPLKKDEEVGNEGGGGGSLRSKKVTLEYHLEQCRRIFGEGVGEPRVEEINARFGGSRPKATRVFYSDFSDDPWQAASVLSEE---DTEQPFQLAVYDGAGHCSDLHEPTEEDHPDLVNLRERFRTYLTQWLME 502
            L+LF ++  +     E+W PPERCRGG LWQD IARHP+ A SP     TWDAP+DHF+ ++T TFKQRYF + +FF+   N+   LVFLMIGGEGTL  PP GFV +LGK+++ALLV+LEHRFYG S P  DMST + ++ LT++QALADLAAF+D+LQ   FP  PL FFTIGGSYPGALA++YRI YP KT+GSLSSSGVVN+IL+FP FDR VA+AIG  CA RLRNVT AFEDAL +PAAAC  KGLFGCDCEMWD DFFYMLADAAAMV+QYGRK ELCSF LEGL           P+  E++  FA+FT  YYGPQFG+SCFYDSRCA D+ KATLNERSWRWQKCSELAYFQVAP ++D E     GG  +LRS +V+LEYH+EQC+RIFG+ VG P V+ +N RFGG++P ATRVFYSDFSDDPW+AASV SEE   + EQPF+LAVYDGAGHCSDLHEPT  DHP+LV LR RF  YLTQWL+E
Sbjct:   11 LLLFVYVATI----TEAWLPPERCRGGELWQDLIARHPYLAESP-GLPQTWDAPVDHFDPNNTGTFKQRYFLDAQFFKAPENNGTGLVFLMIGGEGTLTDPPSGFVKELGKQYAALLVSLEHRFYGASLPNEDMSTSSYARLLTIDQALADLAAFSDFLQAEHFPETPLRFFTIGGSYPGALAAFYRIAYPGKTVGSLSSSGVVNAILNFPDFDRVVAQAIGGHCADRLRNVTRAFEDALLVPAAACAAKGLFGCDCEMWDADFFYMLADAAAMVDQYGRKAELCSFLLEGL--------GTAPTALEMLRGFADFTRSYYGPQFGSSCFYDSRCAADLKKATLNERSWRWQKCSELAYFQVAPTERDAE-----GGSVALRSGQVSLEYHIEQCQRIFGDSVGMPAVKSVNDRFGGAQPTATRVFYSDFSDDPWRAASVQSEEGGPEVEQPFELAVYDGAGHCSDLHEPTAGDHPNLVKLRGRFEAYLTQWLIE 487
The following BLAST results are available for this feature:
BLAST of NO03G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29672.14.000e-19467.27peptidase s28 family protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02290NO03G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02290.1NO03G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02290.1.cds1NO03G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02290.1 ID=NO03G02290.1|Name=NO03G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp
ATGCCCCGACCCACCATTACCTTCTTTGTCCTCGTCCTTTTCACCTTCCT
CCTCGGCCTTTGCCCGGTACAAGCCGAGTCCTGGTTCCCGCCGGAACGAT
GCCGCGGAGGCACGCTCTGGCAAGATTTCATCGCCCGCCATCCGCACGCG
GCTGCTTCCCCTTATGCACACGCGCACACATGGGACGCCCCAATCGACCA
TTTCAATGCCGACGACACGAGCACGTTCAAGCAGCGCTACTTTTTCAATG
ATAAGTTCTTTCAACCATTAGCTAATAGCTCTAATAATCTGGTCTTTCTT
ATGATTGGGGGTGAAGGCACCCTCCAAGGCCCTCCAGGAGGGTTCGTAGC
AGATCTCGGCAAGGAGCACAGCGCTCTCCTCGTCGCCCTCGAACACCGCT
TCTACGGCGAAAGCTTTCCCAAGTACGACATGAGCACCGAGGCCCTTTCT
CAATACCTGACCGTAAATCAAGCCCTGGCAGACCTCGCGGCCTTCACCGA
CTATCTCCAAAATTCAAAATTCCCGAACGTCCCCCTCTGTTTTTTTACAA
TCGGTGGATCTTACCCAGGGGCACTCGCCTCCTGGTACCGCATTGTTTAC
CCGGATAAAACCATCGGCTCGCTGTCTTCATCTGGTGTGGTGAATTCCAT
TTTGGATTTCCCTCAATTTGACAGGTATGTTGCCCGCGCGATCGGGGAGT
CCTGTGCAGGGCGGCTGCGGAACGTGACACACGCCTTTGAAGACGCTCTG
CGTATCCCTGCGGCCGCCTGTGTGACGAAGGGGTTGTTTGGTTGTGATTG
CGAGATGTGGGACGTGGATTTCTTTTACATGCTCGCAGATGCTGCCGCGA
TGGTGAATCAGTATGGCCGGAAAGAAGAATTGTGCTCATTTTTGGAGGGA
TTGGAGAAGGACGAGGAGGGAAGGAGGAAGGAACCGCCGTCGGAGTTTGA
ATTGGTTTGGAGGTTTGCGAATTTCACGAACAGATACTATGGACCGCAAT
TCGGGGCGTCGTGTTTTTATGACTCGCGGTGTGCCGGAGATGTGAGCAAA
GCAACATTAAATGAGAGGTCGTGGCGCTGGCAGAAATGTTCGGAGCTGGC
TTATTTTCAGGTGGCGCCCCTGAAAAAGGACGAGGAAGTGGGGAATGAAG
GGGGGGGAGGGGGGTCGTTGAGGTCGAAGAAGGTGACATTGGAATACCAT
TTGGAGCAGTGCCGGAGGATTTTCGGAGAGGGCGTGGGCGAGCCGAGGGT
GGAGGAGATTAATGCGAGGTTCGGGGGGTCGAGACCGAAGGCAACGAGAG
TCTTTTACAGCGACTTTTCGGACGATCCGTGGCAGGCGGCGTCGGTGCTG
TCGGAGGAGGATACGGAGCAACCGTTTCAATTGGCGGTGTATGATGGAGC
GGGGCATTGCTCGGATTTGCATGAGCCGACGGAGGAAGATCACCCGGATT
TGGTTAACTTGAGGGAGAGATTCAGGACGTATTTGACGCAGTGGTTGATG
GAAGGGGAACATGGGGAGGGAGGGAAGGAGACCACAGACAGAAAGTCTGT
GGTGAGGTAG
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protein sequence of NO03G02290.1

>NO03G02290.1-protein ID=NO03G02290.1-protein|Name=NO03G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MPRPTITFFVLVLFTFLLGLCPVQAESWFPPERCRGGTLWQDFIARHPHA
AASPYAHAHTWDAPIDHFNADDTSTFKQRYFFNDKFFQPLANSSNNLVFL
MIGGEGTLQGPPGGFVADLGKEHSALLVALEHRFYGESFPKYDMSTEALS
QYLTVNQALADLAAFTDYLQNSKFPNVPLCFFTIGGSYPGALASWYRIVY
PDKTIGSLSSSGVVNSILDFPQFDRYVARAIGESCAGRLRNVTHAFEDAL
RIPAAACVTKGLFGCDCEMWDVDFFYMLADAAAMVNQYGRKEELCSFLEG
LEKDEEGRRKEPPSEFELVWRFANFTNRYYGPQFGASCFYDSRCAGDVSK
ATLNERSWRWQKCSELAYFQVAPLKKDEEVGNEGGGGGSLRSKKVTLEYH
LEQCRRIFGEGVGEPRVEEINARFGGSRPKATRVFYSDFSDDPWQAASVL
SEEDTEQPFQLAVYDGAGHCSDLHEPTEEDHPDLVNLRERFRTYLTQWLM
EGEHGEGGKETTDRKSVVR*
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mRNA from alignment at chr3:668883..670442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02290.1 ID=NO03G02290.1|Name=NO03G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr3:668883..670442+ (Nannochloropsis oceanica)
ATGCCCCGACCCACCATTACCTTCTTTGTCCTCGTCCTTTTCACCTTCCT
CCTCGGCCTTTGCCCGGTACAAGCCGAGTCCTGGTTCCCGCCGGAACGAT
GCCGCGGAGGCACGCTCTGGCAAGATTTCATCGCCCGCCATCCGCACGCG
GCTGCTTCCCCTTATGCACACGCGCACACATGGGACGCCCCAATCGACCA
TTTCAATGCCGACGACACGAGCACGTTCAAGCAGCGCTACTTTTTCAATG
ATAAGTTCTTTCAACCATTAGCTAATAGCTCTAATAATCTGGTCTTTCTT
ATGATTGGGGGTGAAGGCACCCTCCAAGGCCCTCCAGGAGGGTTCGTAGC
AGATCTCGGCAAGGAGCACAGCGCTCTCCTCGTCGCCCTCGAACACCGCT
TCTACGGCGAAAGCTTTCCCAAGTACGACATGAGCACCGAGGCCCTTTCT
CAATACCTGACCGTAAATCAAGCCCTGGCAGACCTCGCGGCCTTCACCGA
CTATCTCCAAAATTCAAAATTCCCGAACGTCCCCCTCTGTTTTTTTACAA
TCGGTGGATCTTACCCAGGGGCACTCGCCTCCTGGTACCGCATTGTTTAC
CCGGATAAAACCATCGGCTCGCTGTCTTCATCTGGTGTGGTGAATTCCAT
TTTGGATTTCCCTCAATTTGACAGGTATGTTGCCCGCGCGATCGGGGAGT
CCTGTGCAGGGCGGCTGCGGAACGTGACACACGCCTTTGAAGACGCTCTG
CGTATCCCTGCGGCCGCCTGTGTGACGAAGGGGTTGTTTGGTTGTGATTG
CGAGATGTGGGACGTGGATTTCTTTTACATGCTCGCAGATGCTGCCGCGA
TGGTGAATCAGTATGGCCGGAAAGAAGAATTGTGCTCATTTTTGGAGGGA
TTGGAGAAGGACGAGGAGGGAAGGAGGAAGGAACCGCCGTCGGAGTTTGA
ATTGGTTTGGAGGTTTGCGAATTTCACGAACAGATACTATGGACCGCAAT
TCGGGGCGTCGTGTTTTTATGACTCGCGGTGTGCCGGAGATGTGAGCAAA
GCAACATTAAATGAGAGGTCGTGGCGCTGGCAGAAATGTTCGGAGCTGGC
TTATTTTCAGGTGGCGCCCCTGAAAAAGGACGAGGAAGTGGGGAATGAAG
GGGGGGGAGGGGGGTCGTTGAGGTCGAAGAAGGTGACATTGGAATACCAT
TTGGAGCAGTGCCGGAGGATTTTCGGAGAGGGCGTGGGCGAGCCGAGGGT
GGAGGAGATTAATGCGAGGTTCGGGGGGTCGAGACCGAAGGCAACGAGAG
TCTTTTACAGCGACTTTTCGGACGATCCGTGGCAGGCGGCGTCGGTGCTG
TCGGAGGAGGATACGGAGCAACCGTTTCAATTGGCGGTGTATGATGGAGC
GGGGCATTGCTCGGATTTGCATGAGCCGACGGAGGAAGATCACCCGGATT
TGGTTAACTTGAGGGAGAGATTCAGGACGTATTTGACGCAGTGGTTGATG
GAAGGGGAACATGGGGAGGGAGGGAAGGAGACCACAGACAGAAAGTCTGT
GGTGAGGTAG
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Coding sequence (CDS) from alignment at chr3:668883..670442+

>NO03G02290.1 ID=NO03G02290.1|Name=NO03G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr3:668883..670442+ (Nannochloropsis oceanica)
ATGCCCCGACCCACCATTACCTTCTTTGTCCTCGTCCTTTTCACCTTCCT
CCTCGGCCTTTGCCCGGTACAAGCCGAGTCCTGGTTCCCGCCGGAACGAT
GCCGCGGAGGCACGCTCTGGCAAGATTTCATCGCCCGCCATCCGCACGCG
GCTGCTTCCCCTTATGCACACGCGCACACATGGGACGCCCCAATCGACCA
TTTCAATGCCGACGACACGAGCACGTTCAAGCAGCGCTACTTTTTCAATG
ATAAGTTCTTTCAACCATTAGCTAATAGCTCTAATAATCTGGTCTTTCTT
ATGATTGGGGGTGAAGGCACCCTCCAAGGCCCTCCAGGAGGGTTCGTAGC
AGATCTCGGCAAGGAGCACAGCGCTCTCCTCGTCGCCCTCGAACACCGCT
TCTACGGCGAAAGCTTTCCCAAGTACGACATGAGCACCGAGGCCCTTTCT
CAATACCTGACCGTAAATCAAGCCCTGGCAGACCTCGCGGCCTTCACCGA
CTATCTCCAAAATTCAAAATTCCCGAACGTCCCCCTCTGTTTTTTTACAA
TCGGTGGATCTTACCCAGGGGCACTCGCCTCCTGGTACCGCATTGTTTAC
CCGGATAAAACCATCGGCTCGCTGTCTTCATCTGGTGTGGTGAATTCCAT
TTTGGATTTCCCTCAATTTGACAGGTATGTTGCCCGCGCGATCGGGGAGT
CCTGTGCAGGGCGGCTGCGGAACGTGACACACGCCTTTGAAGACGCTCTG
CGTATCCCTGCGGCCGCCTGTGTGACGAAGGGGTTGTTTGGTTGTGATTG
CGAGATGTGGGACGTGGATTTCTTTTACATGCTCGCAGATGCTGCCGCGA
TGGTGAATCAGTATGGCCGGAAAGAAGAATTGTGCTCATTTTTGGAGGGA
TTGGAGAAGGACGAGGAGGGAAGGAGGAAGGAACCGCCGTCGGAGTTTGA
ATTGGTTTGGAGGTTTGCGAATTTCACGAACAGATACTATGGACCGCAAT
TCGGGGCGTCGTGTTTTTATGACTCGCGGTGTGCCGGAGATGTGAGCAAA
GCAACATTAAATGAGAGGTCGTGGCGCTGGCAGAAATGTTCGGAGCTGGC
TTATTTTCAGGTGGCGCCCCTGAAAAAGGACGAGGAAGTGGGGAATGAAG
GGGGGGGAGGGGGGTCGTTGAGGTCGAAGAAGGTGACATTGGAATACCAT
TTGGAGCAGTGCCGGAGGATTTTCGGAGAGGGCGTGGGCGAGCCGAGGGT
GGAGGAGATTAATGCGAGGTTCGGGGGGTCGAGACCGAAGGCAACGAGAG
TCTTTTACAGCGACTTTTCGGACGATCCGTGGCAGGCGGCGTCGGTGCTG
TCGGAGGAGGATACGGAGCAACCGTTTCAATTGGCGGTGTATGATGGAGC
GGGGCATTGCTCGGATTTGCATGAGCCGACGGAGGAAGATCACCCGGATT
TGGTTAACTTGAGGGAGAGATTCAGGACGTATTTGACGCAGTGGTTGATG
GAAGGGGAACATGGGGAGGGAGGGAAGGAGACCACAGACAGAAAGTCTGT
GGTGAGGTAG
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Synonyms
Publications