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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:645887..647260 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02170.1 vs.
Match: EWM29680.1 (hypothetical protein Naga_100299g7 [Nannochloropsis gaditana]) HSP 1 Score: 306.6 bits (784), Expect = 1.300e-79 Identity = 239/464 (51.51%), Postives = 298/464 (64.22%), Query Frame = 0
Query: 1 MYSGTSYASGNPYVVGGYRVSSTSSTNTTTHA-NPVALSTSSPLSTTTTSSPVTAYISSSTTMT------STSDCCASTSSLSSPTNAAPPSS---SSTPYGGVGLISSTLA--GTNTCSSTSSTKNISSRKPIAPL----PLSSLSSLSSQPDTKITPAVSSLLSSQLPSA--SPHSPTTASSPYSTFP-IRASGAN---EVCSSGSS----------SNSDTTSSCSSPRTQTRSTNNYQRSSSGTLSQAAAAFAATAAAAGSRNGKRSSRTCGGGPSATNSIKVEVVETDMTPGADGPTYSIKLNMNGRSYVAKRHHNKLRSLVDGLRDRGYRVWRPFPEVEEMVGQAPVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSAAHLRKKRSVQLEQMSARIDAFLKTVFLENDDLQYEQVVSQFFWEPLEKKLPVLLEEEGWEDGEGESDTEEEGEGSSSS 433
MY+GTS+AS NPYV+GGYR S+T S ++T NP LS+ SP ++ TS P A + S+T STS +TS +P A P SSTPYGGVG +S ++ + TC S+ + ++ P SS +S S+ +P S ++S LP+A S ++P T+ P +A G + C+S S SN+ TT+ S T R + + RS S QAAAA + ++ + G+R R + A+N+IKVEVVETDMTPGADGPTY IKLNMNGRSY+AKRHHNKLRSLV+GLR RGYRVWRPFPEVE+M+ Q+PVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSA+HLRKKRSVQLEQMS RIDAFLKTVFLENDDL+YEQ V FFWEPL+KKLP ++EE+ + E DTEEE S ++
Sbjct: 1 MYAGTSFASSNPYVLGGYRASTTGSAGSSTSTGNP--LSSQSPDTSCPTSWPSQALPAPSSTPIDSINHPSTSLSSTATSPSLTPIGAGLPRKLPPSSTPYGGVGPLSGAISQKKSTTCPSSLDGEECAAASTAGRFFPEPPSSSTASPISKQSALPSPPQSYSVASCLPTAASSSYTPYTSGCATKVAPDTKAHGKRDGLDTCTSTDSIMAPSGGAYPSNAGTTTYLSD-ATSNRINSIHSRSHSH--GQAAAARSPSSVSRGARRSGRPGK-------ASNTIKVEVVETDMTPGADGPTYHIKLNMNGRSYMAKRHHNKLRSLVEGLRARGYRVWRPFPEVEDMMRQSPVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSASHLRKKRSVQLEQMSQRIDAFLKTVFLENDDLEYEQEVYHFFWEPLQKKLPPVMEED--VSSDTEDDTEEEEVNSKTA 450
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02170.1 ID=NO03G02170.1|Name=NO03G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp ATGTATTCCGGCACATCTTACGCCTCGGGCAACCCATATGTTGTAGGGGG CTACCGGGTCTCTTCGACATCCAGCACCAACACGACAACACATGCTAACC CGGTGGCCCTGAGCACCTCCAGCCCCCTCAGCACCACCACCACTTCAAGC CCGGTGACTGCATACATCAGCAGCAGCACCACCATGACGTCGACAAGCGA TTGTTGTGCCTCCACCTCGTCCTTGTCCTCACCTACAAACGCAGCGCCTC CCAGCAGCAGTTCGACTCCCTACGGTGGCGTGGGCCTCATCTCCTCCACA TTGGCAGGAACCAACACCTGCAGCAGCACCAGTAGCACCAAAAATATCTC CTCACGTAAACCGATCGCGCCACTGCCACTTTCGTCATTATCATCATTGT CATCACAGCCCGATACGAAAATAACTCCTGCAGTGTCCTCCCTCTTGTCC TCCCAACTGCCCTCGGCTTCGCCCCACTCCCCAACAACCGCCAGCTCACC CTACAGCACATTTCCCATCAGAGCGAGTGGCGCGAATGAGGTGTGCAGCA GCGGTAGCAGCAGTAATAGCGATACTACCTCCTCTTGCTCCTCTCCACGG ACTCAGACGAGAAGTACCAACAACTACCAGCGCAGCAGCAGTGGCACCCT AAGCCAAGCAGCCGCTGCCTTCGCCGCAACAGCAGCCGCTGCCGGCTCCC GAAACGGGAAGAGATCATCCCGCACCTGTGGGGGAGGGCCTTCAGCTACC AACAGCATCAAGGTGGAGGTGGTGGAGACTGACATGACGCCTGGCGCGGA CGGGCCTACTTATTCGATCAAGCTCAACATGAATGGTCGGAGCTACGTAG CGAAGCGGCACCATAACAAGCTGCGCTCGCTTGTGGACGGACTCCGCGAT CGGGGATATCGGGTCTGGCGACCTTTCCCAGAGGTTGAGGAGATGGTTGG GCAAGCTCCCGTAAAGGTGGAGAACAGCTTAGTGGAAGCATTGCCATTCT ACGAGGGTTTTGGGTATTCAATCAAGAGTCTTGCGTCGACCATGCTGAAA AGCACGAGCGCAGCGCATTTGCGGAAGAAGCGCTCGGTGCAGCTGGAGCA GATGTCGGCGCGCATTGACGCGTTTTTGAAAACCGTTTTTTTGGAAAATG ACGACTTGCAGTATGAGCAAGTGGTGTCCCAATTTTTTTGGGAGCCGCTG GAGAAGAAGCTACCGGTGTTGCTTGAAGAGGAGGGGTGGGAGGACGGAGA AGGAGAGTCAGATACGGAGGAAGAAGGGGAGGGAAGCAGTTCCTCGGACG AAGAGGAGGATTTAGGGAGAGAGGGGGGGAGGGAGACGGCGGTGCAGGCC GGTATGGTGCGGATGCGGAAGTGA back to topprotein sequence of NO03G02170.1 >NO03G02170.1-protein ID=NO03G02170.1-protein|Name=NO03G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp MYSGTSYASGNPYVVGGYRVSSTSSTNTTTHANPVALSTSSPLSTTTTSS PVTAYISSSTTMTSTSDCCASTSSLSSPTNAAPPSSSSTPYGGVGLISST LAGTNTCSSTSSTKNISSRKPIAPLPLSSLSSLSSQPDTKITPAVSSLLS SQLPSASPHSPTTASSPYSTFPIRASGANEVCSSGSSSNSDTTSSCSSPR TQTRSTNNYQRSSSGTLSQAAAAFAATAAAAGSRNGKRSSRTCGGGPSAT NSIKVEVVETDMTPGADGPTYSIKLNMNGRSYVAKRHHNKLRSLVDGLRD RGYRVWRPFPEVEEMVGQAPVKVENSLVEALPFYEGFGYSIKSLASTMLK STSAAHLRKKRSVQLEQMSARIDAFLKTVFLENDDLQYEQVVSQFFWEPL EKKLPVLLEEEGWEDGEGESDTEEEGEGSSSSDEEEDLGREGGRETAVQA GMVRMRK* back to topmRNA from alignment at chr3:645887..647260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02170.1 ID=NO03G02170.1|Name=NO03G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp|location=Sequence derived from alignment at chr3:645887..647260+ (Nannochloropsis oceanica) ATGTATTCCGGCACATCTTACGCCTCGGGCAACCCATATGTTGTAGGGGG
CTACCGGGTCTCTTCGACATCCAGCACCAACACGACAACACATGCTAACC
CGGTGGCCCTGAGCACCTCCAGCCCCCTCAGCACCACCACCACTTCAAGC
CCGGTGACTGCATACATCAGCAGCAGCACCACCATGACGTCGACAAGCGA
TTGTTGTGCCTCCACCTCGTCCTTGTCCTCACCTACAAACGCAGCGCCTC
CCAGCAGCAGTTCGACTCCCTACGGTGGCGTGGGCCTCATCTCCTCCACA
TTGGCAGGAACCAACACCTGCAGCAGCACCAGTAGCACCAAAAATATCTC
CTCACGTAAACCGATCGCGCCACTGCCACTTTCGTCATTATCATCATTGT
CATCACAGCCCGATACGAAAATAACTCCTGCAGTGTCCTCCCTCTTGTCC
TCCCAACTGCCCTCGGCTTCGCCCCACTCCCCAACAACCGCCAGCTCACC
CTACAGCACATTTCCCATCAGAGCGAGTGGCGCGAATGAGGTGTGCAGCA
GCGGTAGCAGCAGTAATAGCGATACTACCTCCTCTTGCTCCTCTCCACGG
ACTCAGACGAGAAGTACCAACAACTACCAGCGCAGCAGCAGTGGCACCCT
AAGCCAAGCAGCCGCTGCCTTCGCCGCAACAGCAGCCGCTGCCGGCTCCC
GAAACGGGAAGAGATCATCCCGCACCTGTGGGGGAGGGCCTTCAGCTACC
AACAGCATCAAGGTGGAGGTGGTGGAGACTGACATGACGCCTGGCGCGGA
CGGGCCTACTTATTCGATCAAGCTCAACATGAATGGTCGGAGCTACGTAG
CGAAGCGGCACCATAACAAGCTGCGCTCGCTTGTGGACGGACTCCGCGAT
CGGGGATATCGGGTCTGGCGACCTTTCCCAGAGGTTGAGGAGATGGTTGG
GCAAGCTCCCGTAAAGGTGGAGAACAGCTTAGTGGAAGCATTGCCATTCT
ACGAGGGTTTTGGGTATTCAATCAAGAGTCTTGCGTCGACCATGCTGAAA
AGCACGAGCGCAGCGCATTTGCGGAAGAAGCGCTCGGTGCAGCTGGAGCA
GATGTCGGCGCGCATTGACGCGTTTTTGAAAACCGTTTTTTTGGAAAATG
ACGACTTGCAGTATGAGCAAGTGGTGTCCCAATTTTTTTGGGAGCCGCTG
GAGAAGAAGCTACCGGTGTTGCTTGAAGAGGAGGGGTGGGAGGACGGAGA
AGGAGAGTCAGATACGGAGGAAGAAGGGGAGGGAAGCAGTTCCTCGGACG
AAGAGGAGGATTTAGGGAGAGAGGGGGGGAGGGAGACGGCGGTGCAGGCC
GGTATGGTGCGGATGCGGAAGTGA back to topCoding sequence (CDS) from alignment at chr3:645887..647260+ >NO03G02170.1 ID=NO03G02170.1|Name=NO03G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr3:645887..647260+ (Nannochloropsis oceanica) ATGTATTCCGGCACATCTTACGCCTCGGGCAACCCATATGTTGTAGGGGG CTACCGGGTCTCTTCGACATCCAGCACCAACACGACAACACATGCTAACC CGGTGGCCCTGAGCACCTCCAGCCCCCTCAGCACCACCACCACTTCAAGC CCGGTGACTGCATACATCAGCAGCAGCACCACCATGACGTCGACAAGCGA TTGTTGTGCCTCCACCTCGTCCTTGTCCTCACCTACAAACGCAGCGCCTC CCAGCAGCAGTTCGACTCCCTACGGTGGCGTGGGCCTCATCTCCTCCACA TTGGCAGGAACCAACACCTGCAGCAGCACCAGTAGCACCAAAAATATCTC CTCACGTAAACCGATCGCGCCACTGCCACTTTCGTCATTATCATCATTGT CATCACAGCCCGATACGAAAATAACTCCTGCAGTGTCCTCCCTCTTGTCC TCCCAACTGCCCTCGGCTTCGCCCCACTCCCCAACAACCGCCAGCTCACC CTACAGCACATTTCCCATCAGAGCGAGTGGCGCGAATGAGGTGTGCAGCA GCGGTAGCAGCAGTAATAGCGATACTACCTCCTCTTGCTCCTCTCCACGG ACTCAGACGAGAAGTACCAACAACTACCAGCGCAGCAGCAGTGGCACCCT AAGCCAAGCAGCCGCTGCCTTCGCCGCAACAGCAGCCGCTGCCGGCTCCC GAAACGGGAAGAGATCATCCCGCACCTGTGGGGGAGGGCCTTCAGCTACC AACAGCATCAAGGTGGAGGTGGTGGAGACTGACATGACGCCTGGCGCGGA CGGGCCTACTTATTCGATCAAGCTCAACATGAATGGTCGGAGCTACGTAG CGAAGCGGCACCATAACAAGCTGCGCTCGCTTGTGGACGGACTCCGCGAT CGGGGATATCGGGTCTGGCGACCTTTCCCAGAGGTTGAGGAGATGGTTGG GCAAGCTCCCGTAAAGGTGGAGAACAGCTTAGTGGAAGCATTGCCATTCT ACGAGGGTTTTGGGTATTCAATCAAGAGTCTTGCGTCGACCATGCTGAAA AGCACGAGCGCAGCGCATTTGCGGAAGAAGCGCTCGGTGCAGCTGGAGCA GATGTCGGCGCGCATTGACGCGTTTTTGAAAACCGTTTTTTTGGAAAATG ACGACTTGCAGTATGAGCAAGTGGTGTCCCAATTTTTTTGGGAGCCGCTG GAGAAGAAGCTACCGGTGTTGCTTGAAGAGGAGGGGTGGGAGGACGGAGA AGGAGAGTCAGATACGGAGGAAGAAGGGGAGGGAAGCAGTTCCTCGGACG AAGAGGAGGATTTAGGGAGAGAGGGGGGGAGGGAGACGGCGGTGCAGGCC GGTATGGTGCGGATGCGGAAGTGA back to top
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