NO03G02090.1, NO03G02090.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02090.1
Unique Name	NO03G02090.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2460
Alignment location	chr3:623249..625708 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:623249..625708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G02090.1 vs.
Match: XP_002414114.1 (nibrin, putative [Ixodes scapularis]; EEC17422.1 nibrin, putative [Ixodes scapularis])

HSP 1 Score: 111.7 bits (278), Expect = 1.100e-20
Identity = 69/237 (29.11%), Postives = 126/237 (53.16%), Query Frame = 0

Query:   35 KKKNKKPYYHLVAGD-FVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARI-WHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMV-----RDLNKTRNSLFGELLFLYVAADETEEL 265
            ++K  + ++ L+ G+ + VGRK+  II +  D ++SR HA +TV  +  + +  V     +++ DLGS+Y T +N+V+L      ++++GD++TFG+  +   + +  P+V+  S +    K+ LKE+AAK G  ++ +W   CTHL++  +   T K   A+V ++PVV   +L   V    S       P+ Y+PD S   +       D N  R +LF   +F ++   +  +L
Sbjct:    5 RRKTGETFFQLLCGEEYTVGRKDVQIIVDG-DASVSRSHALLTVSAVPHDRIDDVSFVPLLRLKDLGSKYGTRLNNVRLAANEETVVQNGDIVTFGQLGSSFTVHYEPPMVITSSCLQPDEKEKLKESAAKLGGRVMPEWSDACTHLVM-SSIRLTVKTTSALVAAKPVVKPTFLYDTVSRLRSKNWMDLNPSDYIPDISEENLTVPKAELDQNPARKTLFSGKVFYFLDKSQHAKL 239

The following BLAST results are available for this feature:

BLAST of NO03G02090.1 vs.

BLAST of NO03G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002414114.1	1.100e-20	29.11	nibrin, putative [Ixodes scapularis]; EEC17422.1 n...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02090	NO03G02090	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02090.1	NO03G02090.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02090.1.cds1	NO03G02090.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:623249..625708+
coding sequence from alignment at chr3:623249..625708+

mRNA sequence

>NO03G02090.1 ID=NO03G02090.1|Name=NO03G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp
ATGTGGGTCCTGGAATTTTTGCCGAGGCCCGGCGATACCGATACGCCGCA
GCTCGGTACAGGGGGCACCTTTGAGGACACGCAAAGCAGCACGGCTTCGG
GCAAGAAAAAGAACAAAAAACCCTACTACCACCTAGTCGCGGGCGACTTT
GTCGTCGGGCGCAAGAACTGTGACATTATCTACAACAAATATGATACCAC
CATTTCACGACAACACGCCCGAATCACCGTCCTGCCCTTGCAGCCCGAGG
AAGTCATCGCAGTCGGGACAGCTCAAACCATCCAAGTCACCGACCTCGGG
TCACGGTACCATACATTGGTCAACGACGTCCAGCTTCCTCCGCAAGCAAC
CCACATCCTCCGCTCTGGTGACGTGCTCACCTTCGGGAGATACGACACAA
AAGCGCGCATCTGGCATAAACCTCTCGTCCTCTGCCTTTCCCGCGTCAGT
GCCACAACCAAACAAACCTTGAAAGAAGCTGCCGCCAAGGCCGGCGCGCA
TATAGTCGACAAGTGGCGTTCCACCTGCACGCATCTTATCGTTGGAAAAA
CCGCAACGGCCACCACAAAGGTCTGCCTTGCCGTCGTTAACTCCCGCCCC
GTGGTAGACGTTAAATGGCTGATGCAGGGAGTGTTGGGGAGGAGCTCGGT
AGGAGTTTCGTTACCGGAGCCCGCGAAGTATCTCCCGGACTGGTCATCAG
TGGCGATGGTGAGGGATTTGAATAAAACGAGGAACTCATTGTTTGGAGAG
TTGTTGTTTTTATACGTGGCTGCGGACGAGACGGAGGAATTGGTCAAGGA
TGCAGGAGCGGGGGTGGAGAAGGTGTATGAGTGGCAAGCCGGGGAGGGAG
AGGAGGAGGGAGGAGGGGTAGAGAGGCGTATAGAGGATGCGAAGAGAATG
GGAGGGAAGCAGTTTGTTGTGGTGATAGACACACAGAAGACATCGTTGAA
AAAGGGGGCGGTGGGGATGATGGAGAGGTTAGTGAAAATCCCCGGGGTGT
ACGTCACGATGAGGCAGCAGGTTGCAGAGAGCATATTTCGGAATCGGCCG
CTGTGTTGTCGAGATGGGGAAGTGATTGGTGGGAGGAGAAGAGGAGGAGG
GAGATGCAGAGGAGGGGGAGGAAGAGGAAGGGCAGAAGGAGAGGGGAAAG
ATATCGAAGGAGGAGGAGAAGGAGAAGCAGAAGCAGAAGCTGTAGGAGCA
ACGACAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACTAAACC
AACAGCAATTGAAACGCTAGCAAACGTACTACCATCACCACCACCAGGAC
GAGCAGCAGCAACAGCAGCGGCAGCAGTAACATCAGCATCGATGCAAATG
GAAAAAGATGAGGAGGTGGACGTCTCTGAAGTCGTTGTTGCCAATCCCTC
CAACCCTTCTCCCCCTCAGCGCACCGAATGCCACAGCCTCCTAACAGCTG
CTGTGCCAAACAGTCCCAGCACACACATCCGTCGCCAGCCCCTGGCGGCG
GAGGAGGAGGAGAAAGAGGAAAGGAAGGAGGAAGGGGAGGAGAGGGAACA
AGAGGGCCTGGAGAGTGCGGGAAAGAACATACGAAAGCTGAAAAGCGTTG
AGGAGGACGTCAATCAAGCCATTGCAGCAGCAGCGACAGGAGCAGCAGCA
GCTGGAGCAGTAACAGCAAAAGCGGCTGGGAAAAAGGTTTCTCCTCCGCC
CCGTGGGGTGGGTCGAGGTAACAATAATAAGGACAACGGTAATCTCTCCA
TGCCTCCCTTCCCCTCCTCCTCCTCCTGCGGACCAACCGCAACAGCAATC
GCAACATCGAATCGCCGTCCTGCTGCTCCTGCTCGTGGCTCTGCTTATCA
TCATCATCATCCTGCTCCTCCTCTTGCTCCTCCTTCCCTCCTTCCTTTCA
AGCCCCTCGATCCTTTGGATGGGTGGACGGTGGCGCCTCGGAAGAAGCCT
CCCCCTCCCCCCAGCTCTCATCTTGCGGGGTCAGATGAGGAGGAGGAGGA
TGGGCTGGGGGTGGGAAGGATGAAGAGAAAAGAGTGGAAGGAGGAGGAGG
AGCAGGAGGAGGGAGAGACAGTGGTGGAGGAGCGGGATTTGTTGGTAGGG
GGAGGGAGGGGCTACTACTTCGAGGATAAAAGAGAAGGAGAGGAAGAGGA
GGAGATTGAGCCAATGCAGTATGTGAATCCCTCTAAGGCAGTAAGTAGAA
AGAGGGGAGGAAGGGAGGGAGAAAGGACTCCTCCACCGCGGCCTGATTTT
AAACGGTTTCGAAAGAATGTGGTGATGGAGGTTAAGGCCGAAGAGAGGAT
AAAGAGGAGGGATTTGATGGCGGTGTTGCCGAAGGAGAGTGAGATGGAGG
TGCAATTGACGCATGAGGAGGCCATGGCGCTTGCGTGGAGGGAGGATGGG
GAACGACTGTTTGCTGATGAGGATGAAGGGCCGAGGAGGAGAAAGGTGGG
GAGGAAGTGA

protein sequence of NO03G02090.1

>NO03G02090.1-protein ID=NO03G02090.1-protein|Name=NO03G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=820bp
MWVLEFLPRPGDTDTPQLGTGGTFEDTQSSTASGKKKNKKPYYHLVAGDF
VVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLG
SRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVS
ATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRP
VVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVRDLNKTRNSLFGE
LLFLYVAADETEELVKDAGAGVEKVYEWQAGEGEEEGGGVERRIEDAKRM
GGKQFVVVIDTQKTSLKKGAVGMMERLVKIPGVYVTMRQQVAESIFRNRP
LCCRDGEVIGGRRRGGGRCRGGGGRGRAEGEGKDIEGGGEGEAEAEAVGA
TTAAATAATAATAATKPTAIETLANVLPSPPPGRAAATAAAAVTSASMQM
EKDEEVDVSEVVVANPSNPSPPQRTECHSLLTAAVPNSPSTHIRRQPLAA
EEEEKEERKEEGEEREQEGLESAGKNIRKLKSVEEDVNQAIAAAATGAAA
AGAVTAKAAGKKVSPPPRGVGRGNNNKDNGNLSMPPFPSSSSCGPTATAI
ATSNRRPAAPARGSAYHHHHPAPPLAPPSLLPFKPLDPLDGWTVAPRKKP
PPPPSSHLAGSDEEEEDGLGVGRMKRKEWKEEEEQEEGETVVEERDLLVG
GGRGYYFEDKREGEEEEEIEPMQYVNPSKAVSRKRGGREGERTPPPRPDF
KRFRKNVVMEVKAEERIKRRDLMAVLPKESEMEVQLTHEEAMALAWREDG
ERLFADEDEGPRRRKVGRK*

mRNA from alignment at chr3:623249..625708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02090.1 ID=NO03G02090.1|Name=NO03G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at chr3:623249..625708+ (Nannochloropsis oceanica)
ATGTGGGTCCTGGAATTTTTGCCGAGGCCCGGCGATACCGATACGCCGCA
GCTCGGTACAGGGGGCACCTTTGAGGACACGCAAAGCAGCACGGCTTCGG
GCAAGAAAAAGAACAAAAAACCCTACTACCACCTAGTCGCGGGCGACTTT
GTCGTCGGGCGCAAGAACTGTGACATTATCTACAACAAATATGATACCAC
CATTTCACGACAACACGCCCGAATCACCGTCCTGCCCTTGCAGCCCGAGG
AAGTCATCGCAGTCGGGACAGCTCAAACCATCCAAGTCACCGACCTCGGG
TCACGGTACCATACATTGGTCAACGACGTCCAGCTTCCTCCGCAAGCAAC
CCACATCCTCCGCTCTGGTGACGTGCTCACCTTCGGGAGATACGACACAA
AAGCGCGCATCTGGCATAAACCTCTCGTCCTCTGCCTTTCCCGCGTCAGT
GCCACAACCAAACAAACCTTGAAAGAAGCTGCCGCCAAGGCCGGCGCGCA
TATAGTCGACAAGTGGCGTTCCACCTGCACGCATCTTATCGTTGGAAAAA
CCGCAACGGCCACCACAAAGGTCTGCCTTGCCGTCGTTAACTCCCGCCCC
GTGGTAGACGTTAAATGGCTGATGCAGGGAGTGTTGGGGAGGAGCTCGGT
AGGAGTTTCGTTACCGGAGCCCGCGAAGTATCTCCCGGACTGGTCATCAG
TGGCGATGGTGAGGGATTTGAATAAAACGAGGAACTCATTGTTTGGAGAG
TTGTTGTTTTTATACGTGGCTGCGGACGAGACGGAGGAATTGGTCAAGGA
TGCAGGAGCGGGGGTGGAGAAGGTGTATGAGTGGCAAGCCGGGGAGGGAG
AGGAGGAGGGAGGAGGGGTAGAGAGGCGTATAGAGGATGCGAAGAGAATG
GGAGGGAAGCAGTTTGTTGTGGTGATAGACACACAGAAGACATCGTTGAA
AAAGGGGGCGGTGGGGATGATGGAGAGGTTAGTGAAAATCCCCGGGGTGT
ACGTCACGATGAGGCAGCAGGTTGCAGAGAGCATATTTCGGAATCGGCCG
CTGTGTTGTCGAGATGGGGAAGTGATTGGTGGGAGGAGAAGAGGAGGAGG
GAGATGCAGAGGAGGGGGAGGAAGAGGAAGGGCAGAAGGAGAGGGGAAAG
ATATCGAAGGAGGAGGAGAAGGAGAAGCAGAAGCAGAAGCTGTAGGAGCA
ACGACAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACTAAACC
AACAGCAATTGAAACGCTAGCAAACGTACTACCATCACCACCACCAGGAC
GAGCAGCAGCAACAGCAGCGGCAGCAGTAACATCAGCATCGATGCAAATG
GAAAAAGATGAGGAGGTGGACGTCTCTGAAGTCGTTGTTGCCAATCCCTC
CAACCCTTCTCCCCCTCAGCGCACCGAATGCCACAGCCTCCTAACAGCTG
CTGTGCCAAACAGTCCCAGCACACACATCCGTCGCCAGCCCCTGGCGGCG
GAGGAGGAGGAGAAAGAGGAAAGGAAGGAGGAAGGGGAGGAGAGGGAACA
AGAGGGCCTGGAGAGTGCGGGAAAGAACATACGAAAGCTGAAAAGCGTTG
AGGAGGACGTCAATCAAGCCATTGCAGCAGCAGCGACAGGAGCAGCAGCA
GCTGGAGCAGTAACAGCAAAAGCGGCTGGGAAAAAGGTTTCTCCTCCGCC
CCGTGGGGTGGGTCGAGGTAACAATAATAAGGACAACGGTAATCTCTCCA
TGCCTCCCTTCCCCTCCTCCTCCTCCTGCGGACCAACCGCAACAGCAATC
GCAACATCGAATCGCCGTCCTGCTGCTCCTGCTCGTGGCTCTGCTTATCA
TCATCATCATCCTGCTCCTCCTCTTGCTCCTCCTTCCCTCCTTCCTTTCA
AGCCCCTCGATCCTTTGGATGGGTGGACGGTGGCGCCTCGGAAGAAGCCT
CCCCCTCCCCCCAGCTCTCATCTTGCGGGGTCAGATGAGGAGGAGGAGGA
TGGGCTGGGGGTGGGAAGGATGAAGAGAAAAGAGTGGAAGGAGGAGGAGG
AGCAGGAGGAGGGAGAGACAGTGGTGGAGGAGCGGGATTTGTTGGTAGGG
GGAGGGAGGGGCTACTACTTCGAGGATAAAAGAGAAGGAGAGGAAGAGGA
GGAGATTGAGCCAATGCAGTATGTGAATCCCTCTAAGGCAGTAAGTAGAA
AGAGGGGAGGAAGGGAGGGAGAAAGGACTCCTCCACCGCGGCCTGATTTT
AAACGGTTTCGAAAGAATGTGGTGATGGAGGTTAAGGCCGAAGAGAGGAT
AAAGAGGAGGGATTTGATGGCGGTGTTGCCGAAGGAGAGTGAGATGGAGG
TGCAATTGACGCATGAGGAGGCCATGGCGCTTGCGTGGAGGGAGGATGGG
GAACGACTGTTTGCTGATGAGGATGAAGGGCCGAGGAGGAGAAAGGTGGG
GAGGAAGTGA

Coding sequence (CDS) from alignment at chr3:623249..625708+

>NO03G02090.1 ID=NO03G02090.1|Name=NO03G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at chr3:623249..625708+ (Nannochloropsis oceanica)
ATGTGGGTCCTGGAATTTTTGCCGAGGCCCGGCGATACCGATACGCCGCA
GCTCGGTACAGGGGGCACCTTTGAGGACACGCAAAGCAGCACGGCTTCGG
GCAAGAAAAAGAACAAAAAACCCTACTACCACCTAGTCGCGGGCGACTTT
GTCGTCGGGCGCAAGAACTGTGACATTATCTACAACAAATATGATACCAC
CATTTCACGACAACACGCCCGAATCACCGTCCTGCCCTTGCAGCCCGAGG
AAGTCATCGCAGTCGGGACAGCTCAAACCATCCAAGTCACCGACCTCGGG
TCACGGTACCATACATTGGTCAACGACGTCCAGCTTCCTCCGCAAGCAAC
CCACATCCTCCGCTCTGGTGACGTGCTCACCTTCGGGAGATACGACACAA
AAGCGCGCATCTGGCATAAACCTCTCGTCCTCTGCCTTTCCCGCGTCAGT
GCCACAACCAAACAAACCTTGAAAGAAGCTGCCGCCAAGGCCGGCGCGCA
TATAGTCGACAAGTGGCGTTCCACCTGCACGCATCTTATCGTTGGAAAAA
CCGCAACGGCCACCACAAAGGTCTGCCTTGCCGTCGTTAACTCCCGCCCC
GTGGTAGACGTTAAATGGCTGATGCAGGGAGTGTTGGGGAGGAGCTCGGT
AGGAGTTTCGTTACCGGAGCCCGCGAAGTATCTCCCGGACTGGTCATCAG
TGGCGATGGTGAGGGATTTGAATAAAACGAGGAACTCATTGTTTGGAGAG
TTGTTGTTTTTATACGTGGCTGCGGACGAGACGGAGGAATTGGTCAAGGA
TGCAGGAGCGGGGGTGGAGAAGGTGTATGAGTGGCAAGCCGGGGAGGGAG
AGGAGGAGGGAGGAGGGGTAGAGAGGCGTATAGAGGATGCGAAGAGAATG
GGAGGGAAGCAGTTTGTTGTGGTGATAGACACACAGAAGACATCGTTGAA
AAAGGGGGCGGTGGGGATGATGGAGAGGTTAGTGAAAATCCCCGGGGTGT
ACGTCACGATGAGGCAGCAGGTTGCAGAGAGCATATTTCGGAATCGGCCG
CTGTGTTGTCGAGATGGGGAAGTGATTGGTGGGAGGAGAAGAGGAGGAGG
GAGATGCAGAGGAGGGGGAGGAAGAGGAAGGGCAGAAGGAGAGGGGAAAG
ATATCGAAGGAGGAGGAGAAGGAGAAGCAGAAGCAGAAGCTGTAGGAGCA
ACGACAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACTAAACC
AACAGCAATTGAAACGCTAGCAAACGTACTACCATCACCACCACCAGGAC
GAGCAGCAGCAACAGCAGCGGCAGCAGTAACATCAGCATCGATGCAAATG
GAAAAAGATGAGGAGGTGGACGTCTCTGAAGTCGTTGTTGCCAATCCCTC
CAACCCTTCTCCCCCTCAGCGCACCGAATGCCACAGCCTCCTAACAGCTG
CTGTGCCAAACAGTCCCAGCACACACATCCGTCGCCAGCCCCTGGCGGCG
GAGGAGGAGGAGAAAGAGGAAAGGAAGGAGGAAGGGGAGGAGAGGGAACA
AGAGGGCCTGGAGAGTGCGGGAAAGAACATACGAAAGCTGAAAAGCGTTG
AGGAGGACGTCAATCAAGCCATTGCAGCAGCAGCGACAGGAGCAGCAGCA
GCTGGAGCAGTAACAGCAAAAGCGGCTGGGAAAAAGGTTTCTCCTCCGCC
CCGTGGGGTGGGTCGAGGTAACAATAATAAGGACAACGGTAATCTCTCCA
TGCCTCCCTTCCCCTCCTCCTCCTCCTGCGGACCAACCGCAACAGCAATC
GCAACATCGAATCGCCGTCCTGCTGCTCCTGCTCGTGGCTCTGCTTATCA
TCATCATCATCCTGCTCCTCCTCTTGCTCCTCCTTCCCTCCTTCCTTTCA
AGCCCCTCGATCCTTTGGATGGGTGGACGGTGGCGCCTCGGAAGAAGCCT
CCCCCTCCCCCCAGCTCTCATCTTGCGGGGTCAGATGAGGAGGAGGAGGA
TGGGCTGGGGGTGGGAAGGATGAAGAGAAAAGAGTGGAAGGAGGAGGAGG
AGCAGGAGGAGGGAGAGACAGTGGTGGAGGAGCGGGATTTGTTGGTAGGG
GGAGGGAGGGGCTACTACTTCGAGGATAAAAGAGAAGGAGAGGAAGAGGA
GGAGATTGAGCCAATGCAGTATGTGAATCCCTCTAAGGCAGTAAGTAGAA
AGAGGGGAGGAAGGGAGGGAGAAAGGACTCCTCCACCGCGGCCTGATTTT
AAACGGTTTCGAAAGAATGTGGTGATGGAGGTTAAGGCCGAAGAGAGGAT
AAAGAGGAGGGATTTGATGGCGGTGTTGCCGAAGGAGAGTGAGATGGAGG
TGCAATTGACGCATGAGGAGGCCATGGCGCTTGCGTGGAGGGAGGATGGG
GAACGACTGTTTGCTGATGAGGATGAAGGGCCGAGGAGGAGAAAGGTGGG
GAGGAAGTGA

Synonyms

Publications