NO03G02070.1, NO03G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02070.1
Unique NameNO03G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2461
Alignment locationchr3:619459..622073 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:619459..622073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02070.1 vs.
Match: EWM29643.1 (mbr-related protein [Nannochloropsis gaditana])

HSP 1 Score: 477.6 bits (1228), Expect = 4.600e-131
Identity = 267/432 (61.81%), Postives = 320/432 (74.07%), Query Frame = 0 
Query:  105 EEEDDLVGTARLSYGSDGQKGLRMDVDLDVSELTSHLGPAAKPLVAVAKAIQQTIFYTAPMLALAGLITQIAGISCSRYTKTQADKKDGE----------KKGSIN---------YKGNRSTTADWKQQQKQQD------AKAAVVAKTNKKGASPLSSLWAFLKWPFPYSLFLSSSSSSTLSSSRSKDKDNSKQAAHVCNVKGGAV--------SMR-----ETLDWNAFGILTTRAAGQWSSLVIAGIVLGKLLNHAAASTKFDPTLLLSLDIFTAFAAIFLSENVGFLRTKMDMSWYQRVLRKPTWTPKPIVFPLVWIPLKLLQTAALTVVWRLVERNALAVPVLLFLLHLTLGDLWNVVFFGEKRIGYGLSVMYAFYASLAASCYSFYSVRPRAAYLLVPTAVWVFVATSLNYSIWLMNGQPTRFPTK 499
            EE++DLVG AR+SYGSDGQKGLRMDVDLDV+ELTSHLGPAAKPLVAVA+AIQ TIFYTAP+LALAGL+TQIAGI+CSRYTKTQADKK  +          KK ++           + +R    + ++Q K+QD      AK  ++AK  K  AS  +S+W +LK  F           S++S  +SKD     + A V   KGGA+        S R     E LDWNAF +L+ RAA QW+ LV     +G+ +  A AS K +P LL+SLD+FTA +A+FLSE VGFLRT+MDM WY RVL+KPTWTP+PIVFPLVW+PLKLLQTAAL +VWRL++R+AL VPV+LFLLHLTLGDLWN+VFFGEKRIG+GLSVMYAFYASLAASCY+FYSV PRAAYL+VPTAVWVF+ATSLNYSIWL+NG PTRFPTK
Sbjct:    2 EEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASS-TSIWGYLKRAF-----------SSISPGKSKDN----KLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTK 417
The following BLAST results are available for this feature:
BLAST of NO03G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29643.14.600e-13161.81mbr-related protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02070NO03G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02070.1NO03G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02070.1.cds1NO03G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02070.1.cds2NO03G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG
GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG
GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC
TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC
GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC
GAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCAACGAGCGGGA
CAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGACGCG
GAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGGGAGC
GATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTGAGTT
GACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCTAAGG
CGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGCCGGG
TTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGACGCA
GGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAAGGGA
ACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGACGCC
AAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTCTCTC
CTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTCCTCT
CCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAAGGAC
AACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCGGTGCTGTTTC
AATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTCACCACCCGGG
CCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGGCAAG
CTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCCTCCT
ATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAAAATG
TGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGTGTTA
CGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCTGGAT
ACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTCTGGCGGTTAG
TAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCACTTG
ACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGATAGG
ATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCGTCGT
GTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGTGCCG
ACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATTCGATCTGGTT
GATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAGCTGT
AGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTTAGCAGCGGTAG
GACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCTCTAT
ATCTAGATAGAGAAGGGGGATTTTGGGGGAAGGCATATGTCGTGGAGAAA
ACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGAGTGA
GCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAGTATC
ATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCCATTT
TGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTACATAA
AGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGAGATC
GGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGAAGCA
ACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAGACGT
AATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATACACC
ACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGATTCG
CTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATTATTA
CGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCATTGGG
GCATTGGAGAGGGAAGAGAGAGAATGGAGAGACGAAGGGTCTAGATACAG
AGAGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGAACGA
TTTGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAGGGGA
AATGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAAATGA
AATTTCCCCTC
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protein sequence of NO03G02070.1

>NO03G02070.1-protein ID=NO03G02070.1-protein|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MGSGRAVGLLMSAGIMLAEGGSRSTNLPPLPAASYPPPSASWAASSMDPT
SLPRLLTRRGGIKIRAEPVIEGESSRSRIPSGSNERDKKGGGKNSKRDTP
DRRGEEEDDLVGTARLSYGSDGQKGLRMDVDLDVSELTSHLGPAAKPLVA
VAKAIQQTIFYTAPMLALAGLITQIAGISCSRYTKTQADKKDGEKKGSIN
YKGNRSTTADWKQQQKQQDAKAAVVAKTNKKGASPLSSLWAFLKWPFPYS
LFLSSSSSSTLSSSRSKDKDNSKQAAHVCNVKGGAVSMRETLDWNAFGIL
TTRAAGQWSSLVIAGIVLGKLLNHAAASTKFDPTLLLSLDIFTAFAAIFL
SENVGFLRTKMDMSWYQRVLRKPTWTPKPIVFPLVWIPLKLLQTAALTVV
WRLVERNALAVPVLLFLLHLTLGDLWNVVFFGEKRIGYGLSVMYAFYASL
AASCYSFYSVRPRAAYLLVPTAVWVFVATSLNYSIWLMNGQPTRFPTKMQ
Q*
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mRNA from alignment at chr3:619459..622073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at chr3:619459..622073+ (Nannochloropsis oceanica)
AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG
GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG
GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC
TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC
GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC
GAGGGGGAGTCCTCGAGATCACGGGTATGTTTCGGGAAAGGGAGAACGGA
AGGGAAGGAGAACCCCCTCTGGGGAATTGCCTTATTCGCAACCCACGGCG
CTTTTCGGGAAGCGGGCATACACGTGGATGGTCAACAATTTGCTCATCAA
ATCGTCTCTAAATTCTACCACAATATAGATACCAAGCGGCAGCAACGAGC
GGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGA
CGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGG
GAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTG
AGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCT
AAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGC
CGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGA
CGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAA
GGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGA
CGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTC
TCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTC
CTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAA
GGACAACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCGGTGCTG
TTTCAATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTCACCACC
CGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGG
CAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCC
TCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAA
AATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGT
GTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCT
GGATACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTCTGGCGG
TTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCA
CTTGACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGA
TAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCG
TCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGT
GCCGACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATTCGATCT
GGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAG
CTGTAGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTTAGCAGCG
GTAGGACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCT
CTATATCTAGATAGAGAAGGGGGATTTTGGGGGAAGGCATATGTCGTGGA
GAAAACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGA
GTGAGCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAG
TATCATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCC
ATTTTGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTAC
ATAAAGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGA
GATCGGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGA
AGCAACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAG
ACGTAATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATA
CACCACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGA
TTCGCTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATT
ATTACGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCAT
TGGGGCATTGGAGAGGGAAGAGAGAGAATGGAGAGACGAAGGGTCTAGAT
ACAGAGAGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGA
ACGATTTGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAG
GGGAAATGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAA
ATGAAATTTCCCCTC
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Coding sequence (CDS) from alignment at chr3:619459..622073+

>NO03G02070.1 ID=NO03G02070.1|Name=NO03G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr3:619459..622073+ (Nannochloropsis oceanica)
ATGGGCAGCGGCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCT
AGCGGAAGGGGGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCT
CGTACCCACCTCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACA
TCCCTGCCACGCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGA
GCCTGTGATCGAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCA
ACGAGCGGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCC
GACAGACGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAG
CTATGGGAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATG
TGAGTGAGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCG
GTGGCTAAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGC
TCTCGCCGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACA
CTAAGACGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAAT
TACAAAGGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCA
GCAAGACGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCT
CCCCTCTCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCG
CTCTTCCTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAA
AGACAAGGACAACAGTAAACAAGCAGCTCACGTCTGCAACGTCAAAGGCG
GTGCTGTTTCAATGCGAGAAACCCTCGACTGGAATGCCTTTGGTATTCTC
ACCACCCGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGT
TCTCGGCAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCA
CCCTCCTCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTG
AGTGAAAATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCA
GCGGGTGTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCC
TGGTCTGGATACCGCTGAAACTGCTGCAAACGGCTGCGTTAACGGTAGTC
TGGCGGTTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCT
TCTGCACTTGACACTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGA
AGAGGATAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTG
GCCGCGTCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTT
GCTTGTGCCGACGGCGGTGTGGGTCTTTGTTGCGACGAGTTTGAATTATT
CGATCTGGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAG
CAGTAG
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Synonyms
Publications