NO03G02050.1, NO03G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02050.1
Unique NameNO03G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr3:615653..617173 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:615653..617173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02050.1 vs.
Match: XP_005855738.1 (n-acetyltransferase subunit, partial [Nannochloropsis gaditana CCMP526]; EKU20620.1 n-acetyltransferase subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 261.2 bits (666), Expect = 6.900e-66
Identity = 148/220 (67.27%), Postives = 166/220 (75.45%), Query Frame = 0 
Query:    1 MLGPSFLRRELSANILFLYLLRTSAAVVTPPERPAWTRGYVAFHKDRTGMKVSTASATAAAAGGVHDQGHYFTRPSMFGRTGGGGVPNPSKNNGGSGGSSSGNSAST-GGGSSAIMTAASSKTASFAGTTTLQVAPPQVCIRTARRDDIPAIEACNLKTLPENYPNAFYHNHLLQWPYLALVAERQPPPASRGENNNERGEGEGGREGAGKKIVGYVLGR 220
            MLGPS +RRELSAN+LFLYLLRTSAAVVTPPERPAW RGYVAFHKDR+GMK S A+A+AAA    HDQGH+FTR S FGR  G      S +     GS++GN  S+    S +I T+AS+K + +AG  TL+VAPPQVCIRTARR+DIPAIEACNLKTLPENYPNAFY+NHLLQWPYLALVAERQ P    GE         G   G GKKIVGYVLGR
Sbjct:    1 MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKAS-ATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAG-NTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARGEGERGAGAATDAGEMGGEGKKIVGYVLGR 218
The following BLAST results are available for this feature:
BLAST of NO03G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855738.16.900e-6667.27n-acetyltransferase subunit, partial [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02050NO03G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02050.1NO03G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02050.1.cds1NO03G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02050.1 ID=NO03G02050.1|Name=NO03G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ATGCTTGGTCCCTCCTTTTTGCGTCGAGAACTCTCGGCCAACATTCTCTT
TCTCTACCTCTTGCGGACGTCTGCCGCCGTGGTAACCCCCCCCGAACGCC
CAGCGTGGACGCGTGGCTACGTTGCCTTCCACAAGGATCGAACAGGAATG
AAAGTCTCCACTGCCAGCGCGACCGCTGCTGCTGCCGGTGGTGTGCATGA
TCAAGGGCACTACTTCACGCGTCCTTCAATGTTTGGACGGACCGGTGGGG
GTGGTGTACCCAACCCGAGCAAAAACAATGGTGGCAGCGGCGGCAGTAGC
AGCGGCAACAGCGCCAGCACCGGCGGGGGTAGCAGTGCTATCATGACTGC
CGCGTCCAGTAAAACGGCATCATTCGCAGGTACAACAACATTGCAAGTGG
CCCCTCCACAGGTGTGTATTCGCACGGCGAGACGGGATGACATCCCGGCG
ATTGAAGCCTGTAACTTGAAGACATTGCCCGAAAACTACCCGAATGCCTT
TTATCATAACCATTTACTTCAATGGCCTTATCTAGCGTTGGTGGCTGAGA
GACAGCCACCTCCTGCTTCTCGGGGTGAGAATAATAATGAGCGTGGGGAA
GGGGAGGGAGGGAGGGAGGGCGCGGGAAAAAAAATCGTGGGGTATGTGCT
TGGACGGGTGGAAGTGACAAGCGCCGCTGTGGAGTCAGACGAAGCCTTTA
ATTCTCTCCGTCCTCAAGAAACAGATTATAACCCTAGTCTAGCACCCATT
TCAGCTTCCTCTTCTTCTTCTGCCTCCGTTTCCGTTTCAATGCCTCTGGG
CGGCGCTGCTGCTGCTTCTGGTGCCTTCCCCGGCCGTAAGACAGGCCACG
TCTCCTCCCTGGCCGTTTTGGATGACTACCGTCGAATGGGGATTGCGAAA
GAATTGATGGAGATCCTCCATGTGCAAATGAAGTTCAGATATGGAGTAGA
TTGCTCGACGTTGCATGTGCGTTGCTCCAATCGAGGAGCCCAAAAATTGT
ATTTGGGATCGTTGGGTTATAGTGTGGTGGAGACCGTGCAGAGATATTAT
CAGGATGGCGCGAACGCCTATTATATGAAGTTGGATTTTACAGGGGGAGA
TACAAGGAGAGACGGGGAGAGGCGAGCTGGGGGAAAGGTTGTCGGGAGGG
GGGAGGTAGTGTTGCAGGAGGGGCTGGGGTTGCGGGAGGAGGAGGAGGAG
GACGACGAGGTGAGGGAGAGAGAAGAGGAGGAGACAGAGGTCCAGGGGGC
GGCGGGCGGAGAAGGAAAGGACGGAGGAGGAAAAATGCGGATTGGGGGGT
CGGCTCCAGGAGCAAGCAGTGGCAGTAGCAACAGCTGTAGCAGTAGCAGT
AGCAGCAGTGGTTTCAAAGTGCGGGAGAAGGAGTCGGCGTTACTGACGCA
GGACAGTCAGGGTTACTTTCAGCTTTATCCTTCCTCCCCCACTTCCTCCT
CCTCTACTTTGTCTTCGGGAGCACGAAAGAGAGGTGCTCCTGGTGGTGGC
GGTCAGCGGCAGCAGTGGTAG
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protein sequence of NO03G02050.1

>NO03G02050.1-protein ID=NO03G02050.1-protein|Name=NO03G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MLGPSFLRRELSANILFLYLLRTSAAVVTPPERPAWTRGYVAFHKDRTGM
KVSTASATAAAAGGVHDQGHYFTRPSMFGRTGGGGVPNPSKNNGGSGGSS
SGNSASTGGGSSAIMTAASSKTASFAGTTTLQVAPPQVCIRTARRDDIPA
IEACNLKTLPENYPNAFYHNHLLQWPYLALVAERQPPPASRGENNNERGE
GEGGREGAGKKIVGYVLGRVEVTSAAVESDEAFNSLRPQETDYNPSLAPI
SASSSSSASVSVSMPLGGAAAASGAFPGRKTGHVSSLAVLDDYRRMGIAK
ELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLGSLGYSVVETVQRYY
QDGANAYYMKLDFTGGDTRRDGERRAGGKVVGRGEVVLQEGLGLREEEEE
DDEVREREEEETEVQGAAGGEGKDGGGKMRIGGSAPGASSGSSNSCSSSS
SSSGFKVREKESALLTQDSQGYFQLYPSSPTSSSSTLSSGARKRGAPGGG
GQRQQW*
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mRNA from alignment at chr3:615653..617173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02050.1 ID=NO03G02050.1|Name=NO03G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at chr3:615653..617173+ (Nannochloropsis oceanica)
ATGCTTGGTCCCTCCTTTTTGCGTCGAGAACTCTCGGCCAACATTCTCTT
TCTCTACCTCTTGCGGACGTCTGCCGCCGTGGTAACCCCCCCCGAACGCC
CAGCGTGGACGCGTGGCTACGTTGCCTTCCACAAGGATCGAACAGGAATG
AAAGTCTCCACTGCCAGCGCGACCGCTGCTGCTGCCGGTGGTGTGCATGA
TCAAGGGCACTACTTCACGCGTCCTTCAATGTTTGGACGGACCGGTGGGG
GTGGTGTACCCAACCCGAGCAAAAACAATGGTGGCAGCGGCGGCAGTAGC
AGCGGCAACAGCGCCAGCACCGGCGGGGGTAGCAGTGCTATCATGACTGC
CGCGTCCAGTAAAACGGCATCATTCGCAGGTACAACAACATTGCAAGTGG
CCCCTCCACAGGTGTGTATTCGCACGGCGAGACGGGATGACATCCCGGCG
ATTGAAGCCTGTAACTTGAAGACATTGCCCGAAAACTACCCGAATGCCTT
TTATCATAACCATTTACTTCAATGGCCTTATCTAGCGTTGGTGGCTGAGA
GACAGCCACCTCCTGCTTCTCGGGGTGAGAATAATAATGAGCGTGGGGAA
GGGGAGGGAGGGAGGGAGGGCGCGGGAAAAAAAATCGTGGGGTATGTGCT
TGGACGGGTGGAAGTGACAAGCGCCGCTGTGGAGTCAGACGAAGCCTTTA
ATTCTCTCCGTCCTCAAGAAACAGATTATAACCCTAGTCTAGCACCCATT
TCAGCTTCCTCTTCTTCTTCTGCCTCCGTTTCCGTTTCAATGCCTCTGGG
CGGCGCTGCTGCTGCTTCTGGTGCCTTCCCCGGCCGTAAGACAGGCCACG
TCTCCTCCCTGGCCGTTTTGGATGACTACCGTCGAATGGGGATTGCGAAA
GAATTGATGGAGATCCTCCATGTGCAAATGAAGTTCAGATATGGAGTAGA
TTGCTCGACGTTGCATGTGCGTTGCTCCAATCGAGGAGCCCAAAAATTGT
ATTTGGGATCGTTGGGTTATAGTGTGGTGGAGACCGTGCAGAGATATTAT
CAGGATGGCGCGAACGCCTATTATATGAAGTTGGATTTTACAGGGGGAGA
TACAAGGAGAGACGGGGAGAGGCGAGCTGGGGGAAAGGTTGTCGGGAGGG
GGGAGGTAGTGTTGCAGGAGGGGCTGGGGTTGCGGGAGGAGGAGGAGGAG
GACGACGAGGTGAGGGAGAGAGAAGAGGAGGAGACAGAGGTCCAGGGGGC
GGCGGGCGGAGAAGGAAAGGACGGAGGAGGAAAAATGCGGATTGGGGGGT
CGGCTCCAGGAGCAAGCAGTGGCAGTAGCAACAGCTGTAGCAGTAGCAGT
AGCAGCAGTGGTTTCAAAGTGCGGGAGAAGGAGTCGGCGTTACTGACGCA
GGACAGTCAGGGTTACTTTCAGCTTTATCCTTCCTCCCCCACTTCCTCCT
CCTCTACTTTGTCTTCGGGAGCACGAAAGAGAGGTGCTCCTGGTGGTGGC
GGTCAGCGGCAGCAGTGGTAG
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Coding sequence (CDS) from alignment at chr3:615653..617173+

>NO03G02050.1 ID=NO03G02050.1|Name=NO03G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr3:615653..617173+ (Nannochloropsis oceanica)
ATGCTTGGTCCCTCCTTTTTGCGTCGAGAACTCTCGGCCAACATTCTCTT
TCTCTACCTCTTGCGGACGTCTGCCGCCGTGGTAACCCCCCCCGAACGCC
CAGCGTGGACGCGTGGCTACGTTGCCTTCCACAAGGATCGAACAGGAATG
AAAGTCTCCACTGCCAGCGCGACCGCTGCTGCTGCCGGTGGTGTGCATGA
TCAAGGGCACTACTTCACGCGTCCTTCAATGTTTGGACGGACCGGTGGGG
GTGGTGTACCCAACCCGAGCAAAAACAATGGTGGCAGCGGCGGCAGTAGC
AGCGGCAACAGCGCCAGCACCGGCGGGGGTAGCAGTGCTATCATGACTGC
CGCGTCCAGTAAAACGGCATCATTCGCAGGTACAACAACATTGCAAGTGG
CCCCTCCACAGGTGTGTATTCGCACGGCGAGACGGGATGACATCCCGGCG
ATTGAAGCCTGTAACTTGAAGACATTGCCCGAAAACTACCCGAATGCCTT
TTATCATAACCATTTACTTCAATGGCCTTATCTAGCGTTGGTGGCTGAGA
GACAGCCACCTCCTGCTTCTCGGGGTGAGAATAATAATGAGCGTGGGGAA
GGGGAGGGAGGGAGGGAGGGCGCGGGAAAAAAAATCGTGGGGTATGTGCT
TGGACGGGTGGAAGTGACAAGCGCCGCTGTGGAGTCAGACGAAGCCTTTA
ATTCTCTCCGTCCTCAAGAAACAGATTATAACCCTAGTCTAGCACCCATT
TCAGCTTCCTCTTCTTCTTCTGCCTCCGTTTCCGTTTCAATGCCTCTGGG
CGGCGCTGCTGCTGCTTCTGGTGCCTTCCCCGGCCGTAAGACAGGCCACG
TCTCCTCCCTGGCCGTTTTGGATGACTACCGTCGAATGGGGATTGCGAAA
GAATTGATGGAGATCCTCCATGTGCAAATGAAGTTCAGATATGGAGTAGA
TTGCTCGACGTTGCATGTGCGTTGCTCCAATCGAGGAGCCCAAAAATTGT
ATTTGGGATCGTTGGGTTATAGTGTGGTGGAGACCGTGCAGAGATATTAT
CAGGATGGCGCGAACGCCTATTATATGAAGTTGGATTTTACAGGGGGAGA
TACAAGGAGAGACGGGGAGAGGCGAGCTGGGGGAAAGGTTGTCGGGAGGG
GGGAGGTAGTGTTGCAGGAGGGGCTGGGGTTGCGGGAGGAGGAGGAGGAG
GACGACGAGGTGAGGGAGAGAGAAGAGGAGGAGACAGAGGTCCAGGGGGC
GGCGGGCGGAGAAGGAAAGGACGGAGGAGGAAAAATGCGGATTGGGGGGT
CGGCTCCAGGAGCAAGCAGTGGCAGTAGCAACAGCTGTAGCAGTAGCAGT
AGCAGCAGTGGTTTCAAAGTGCGGGAGAAGGAGTCGGCGTTACTGACGCA
GGACAGTCAGGGTTACTTTCAGCTTTATCCTTCCTCCCCCACTTCCTCCT
CCTCTACTTTGTCTTCGGGAGCACGAAAGAGAGGTGCTCCTGGTGGTGGC
GGTCAGCGGCAGCAGTGGTAG
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Synonyms
Publications