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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:579185..581600 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01880.1 vs.
Match: EWM22948.1 (hypothetical protein Naga_100396g5 [Nannochloropsis gaditana]) HSP 1 Score: 253.4 bits (646), Expect = 1.700e-63 Identity = 134/315 (42.54%), Postives = 175/315 (55.56%), Query Frame = 0
Query: 301 RPIPLIGTNLDYDTEGYLSRFASSIPESPQISTHKLIAWGGCDPMVASQIRNLLDCRPDFRVYRSRNNQGCAAGWNIILKYMAMHDREEIPWAIIFNADMYTPPGSLDRFGQEVWAAIDADPSLCVGFFNARGAGVEGRYCSYVYTRRALEVLGLFDENIYPAYYEDVEMDVRMGRAVAAGVCAPARWFNSSEFVHGKPGVGSKGQSRYVSGTKLMEARMRREG-----DEEMRAVARRWSEKIKRGKKASPLYLHQKWGCRPEKEIDLATCRLQHPFGNAARPLSYWQLDAGRRQCVEEGREGVEGMCEYRLVE 611
RPIPL+ TNLDYDTEG+L R + + HKL+ GGCDP + + + PD V+R R GCA GWN L YM H E++ W ++FN D+Y PPG+LD +EVWA D DP C GFFN AG + + +TR L+ LG FDENIYPAYYED EMD+R R++ +P R F ++ HG+ G + Y SGT ++ R+EG D ++R R S ++ RG +S LY+ KWGC E+E C HPF N PLSYW+LD RR+C+ V C Y L E
Sbjct: 129 RPIPLLATNLDYDTEGFLGRLLDGWANAS--ARHKLVVAGGCDPSMLKAVEYVRSQFPDVAVFREREALGCAPGWNRALDYMLYH--EDVEWCLLFNTDVYVPPGALDTLAEEVWAEYDQDPQFCRGFFNVT-AGPDA--VVFAFTRHGLQALGRFDENIYPAYYEDQEMDLRHNRSLEC--TSPPRRFVAATLHHGR-----LGSAEYKSGTSVLRDHWRQEGKRQPRDSQLRKWERDLSNRLDRGFVSSRLYVSAKWGCDAEQE----RCLFAHPFNNPQHPLSYWRLDWARRECILRQERRVRA-CRYTLEE 424
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01880.1 ID=NO03G01880.1|Name=NO03G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp
ATGGGCATGACCGCAAGGCCATCGCACAGCCGCGAAGTCGGCCTGGGCAC
TTATTATGGAGATAATGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGGAACGACATG
AATGCAGGAGATGGCACTGCCGAAGAAGAGGATGCGGGACTATTAGGACT
TCCCTGGACCAATACCCACTGCCCCACGAGCCCACGCAACAGAAGCACCA
GCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGTAAT
AGCGGTTGTATAAGAACGCATTCTCCGTTGCCCTCGACATGTCTACCGGT
CGTGCAACCCTCAGGTGGCAGTAAAAGTAGAAATTTCCTACGTCGCCGCA
TAGGACTTGCAGGCGGGCTGCTACTCGCTTCTGCCTTGGTCGGCGCCGTC
GTGTACAGCGGTTGTGCGGGGCAAAACCGACGAGTAGTGCTTAGGTACAA
AGGAGAGAGCCAAGTTGGGAATACTGGCGGCGTCTTGGCCTCGCCACCAC
GGCCGGGTTTGCAAACAGTGATGGGCGCGTATGATTGTATACCTGCTGAT
CGATTGCTCGGCGGAAGGGTTGAAATTAGCAGTAGTGGGGACAAAGATGA
GGGAACGGGGCTTAATGTAGAGAAGCATGGGGGTGCCGCAGCAGCAGCAG
CCGCGGCGGTGGCAGCAGCAACAACAACAGCAGCAGCAGCAGACAAGGAC
AAAACGGACCTTGACACGCAAGGTCCCGAAGCTGATGCTGATGCCCCGTC
CAAATCGTCTACTCTTCCCACAACTTCCTCGTTTATGTCTTCCCACACTG
CTGCCGCACTATCCTCAGCAGCAGAAGCAGCAGCAGCAGTAGAAAACAAA
AGGCCCATCCCCCTTATCGGTACCAACCTCGACTACGACACCGAAGGTTA
CCTTTCCCGCTTTGCCTCCTCCATTCCTGAATCCCCCCAGATTTCCACAC
ATAAACTTATCGCCTGGGGTGGGTGTGATCCTATGGTGGCGAGCCAAATA
AGAAATTTACTGGATTGCAGGCCTGATTTCCGTGTCTATCGTTCTCGGAA
CAATCAGGGCTGTGCAGCCGGCTGGAATATTATCTTGAAATATATGGCGA
TGCATGATCGAGAAGAAATACCCTGGGCCATCATATTCAACGCCGACATG
TACACACCTCCGGGTAGTCTTGACAGATTTGGACAGGAGGTGTGGGCAGC
AATCGACGCAGATCCCTCCTTGTGTGTCGGTTTCTTCAATGCCCGAGGAG
CAGGGGTGGAGGGACGGTACTGTAGTTACGTGTACACGCGTAGGGCGCTG
GAGGTGTTGGGCCTCTTTGATGAGAATATCTACCCGGCTTATTATGAAGA
TGTGGAGATGGACGTGCGGATGGGGAGGGCAGTTGCGGCCGGGGTGTGTG
CGCCGGCGCGGTGGTTTAATTCGAGTGAGTTTGTGCATGGCAAGCCGGGC
GTGGGGAGTAAGGGGCAGAGTAGGTACGTAAGCGGGACGAAATTGATGGA
AGCGAGAATGAGAAGGGAGGGAGATGAGGAGATGCGGGCAGTAGCTCGAC
GCTGGTCGGAGAAGATAAAGAGGGGAAAGAAGGCCAGTCCTCTTTATTTG
CATCAAAAGTGGGGCTGTAGGCCAGAGAAGGAGATTGATTTGGCGACGTG
TAGGTTGCAGCACCCGTTTGGGAATGCGGCGAGGCCGCTGTCGTACTGGC
AGTTGGATGCGGGGCGGCGTCAGTGTGTGGAGGAGGGGAGGGAGGGAGTC
GAGGGCATGTGTGAGTACAGGTTGGTGGAGAATTAAAAGACGGAGGGTAG
AAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAACAATTTAA
TGGCAGCTATCGCGGTAGGAGTGGGAGTAGTTGTAGTTCCAAAATTATGG
GAATAAACGAATATCAAAATTCATGTACAAACACAGACACCTATCGGTGA
AGCAAAGGAAACACCCATATGTAAGTAAAGCGCGGAGTAAAGGGAAAGCG
GTTGGGAAACCAGGAACCCACCAAATAGAGAATAGATCAGGGGGCGCGCG
AAAGTGCGTATCGCCTGGCATGAGGAGAACACTGCATGGACAAACAAGCG
ACTACGTATA back to topprotein sequence of NO03G01880.1 >NO03G01880.1-protein ID=NO03G01880.1-protein|Name=NO03G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MGMTARPSHSREVGLGTYYGDNAVVVAAAAAAAAAAAAGGGGGGGGGNDM
NAGDGTAEEEDAGLLGLPWTNTHCPTSPRNRSTSSSSSSSSSSSRSSSSN
SGCIRTHSPLPSTCLPVVQPSGGSKSRNFLRRRIGLAGGLLLASALVGAV
VYSGCAGQNRRVVLRYKGESQVGNTGGVLASPPRPGLQTVMGAYDCIPAD
RLLGGRVEISSSGDKDEGTGLNVEKHGGAAAAAAAAVAAATTTAAAADKD
KTDLDTQGPEADADAPSKSSTLPTTSSFMSSHTAAALSSAAEAAAAVENK
RPIPLIGTNLDYDTEGYLSRFASSIPESPQISTHKLIAWGGCDPMVASQI
RNLLDCRPDFRVYRSRNNQGCAAGWNIILKYMAMHDREEIPWAIIFNADM
YTPPGSLDRFGQEVWAAIDADPSLCVGFFNARGAGVEGRYCSYVYTRRAL
EVLGLFDENIYPAYYEDVEMDVRMGRAVAAGVCAPARWFNSSEFVHGKPG
VGSKGQSRYVSGTKLMEARMRREGDEEMRAVARRWSEKIKRGKKASPLYL
HQKWGCRPEKEIDLATCRLQHPFGNAARPLSYWQLDAGRRQCVEEGREGV
EGMCEYRLVEN* back to topmRNA from alignment at chr3:579185..581600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01880.1 ID=NO03G01880.1|Name=NO03G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp|location=Sequence derived from alignment at chr3:579185..581600- (Nannochloropsis oceanica)
ATGGGCATGACCGCAAGGCCATCGCACAGCCGCGAAGTCGGCCTGGGCAC
TTATTATGGAGATAATGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGGAACGACATG
AATGCAGGAGATGGCACTGCCGAAGAAGAGGATGCGGGACTATTAGGACT
TCCCTGGACCAATACCCACTGCCCCACGAGCCCACGCAACAGAAGCACCA
GCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGTAAT
AGCGGTTGTATAAGAACGCATTCTCCGTTGCCCTCGACATGTCTACCGGT
CGTGCAACCCTCAGGTGGCAGTAAAAGTAGAAATTTCCTACGTCGCCGCA
TAGGACTTGCAGGCGGGCTGCTACTCGCTTCTGCCTTGGTCGGCGCCGTC
GTGTACAGCGGTTGTGCGGGGCAAAACCGACGAGTAGTGCTTAGGTACAA
AGGAGAGAGCCAAGTTGGGAATACTGGCGGCGTCTTGGCCTCGCCACCAC
GGCCGGGTTTGCAAACAGTGATGGGCGCGTATGATTGTATACCTGCTGAT
CGATTGCTCGGCGGAAGGGTTGAAATTAGCAGTAGTGGGGACAAAGATGA
GGGAACGGGGCTTAATGTAGAGAAGCATGGGGGTGCCGCAGCAGCAGCAG
CCGCGGCGGTGGCAGCAGCAACAACAACAGCAGCAGCAGCAGACAAGGAC
AAAACGGACCTTGACACGCAAGGTCCCGAAGCTGATGCTGATGCCCCGTC
CAAATCGTCTACTCTTCCCACAACTTCCTCGTTTATGTCTTCCCACACTG
CTGCCGCACTATCCTCAGCAGCAGAAGCAGCAGCAGCAGTAGAAAACAAA
AGGCCCATCCCCCTTATCGGTACCAACCTCGACTACGACACCGAAGGTTA
CCTTTCCCGCTTTGCCTCCTCCATTCCTGAATCCCCCCAGATTTCCACAC
ATAAACTTATCGCCTGGGGTGGGTGTGATCCTATGGTGGCGAGCCAAATA
AGAAATTTACTGGATTGCAGGCCTGATTTCCGTGTCTATCGTTCTCGGAA
CAATCAGGGCTGTGCAGCCGGCTGGAATATTATCTTGAAATATATGGCGA
TGCATGATCGAGAAGAAATACCCTGGTGCGTCCTCTACTTGACCTTTCTG
TCGTCCCTCCCCCCTTGAATCAACATTGACCTTTGTGTCGTCCCTCCCTC
GTTGAATCAACATCGACCTTTCTGTCGTCCCTCCCTCCTTGAATCAACAT
TGACCATCTGTCGTCCCTTTCTCAATCCCTTCCTCCCTCCTTATCGCCCA
GGACAATCATCTTCTCATACCCCTCTTTCCTTGTTTCCCTCGTCCTCACC
TTCCCTTCTTCTTCCCCTATTATTTGAACAGGGCCATCATATTCAACGCC
GACATGTACACACCTCCGGGTAGTCTTGACAGATTTGGACAGGAGGTGTG
GGCAGCAATCGACGCAGATCCCTCCTTGTGTGTCGGTTTCTTCAATGCCC
GAGGAGCAGGGGTGGAGGGACGGTACTGTAGTTACGTGTACACGCGTAGG
GCGCTGGAGGTGTTGGGCCTCTTTGATGAGAATATCTACCCGGCTTATTA
TGAAGATGTGGAGATGGACGTGCGGATGGGGAGGGCAGTTGCGGCCGGGG
TGTGTGCGCCGGCGCGGTGGTTTAATTCGAGTGAGTTTGTGCATGGCAAG
CCGGGCGTGGGGAGTAAGGGGCAGAGTAGGTACGTAAGCGGGACGAAATT
GATGGAAGCGAGAATGAGAAGGGAGGGAGATGAGGAGATGCGGGCAGTAG
CTCGACGCTGGTCGGAGAAGATAAAGAGGGGAAAGAAGGCCAGTCCTCTT
TATTTGCATCAAAAGTGGGGCTGTAGGCCAGAGAAGGAGATTGATTTGGC
GACGTGTAGGTTGCAGCACCCGTTTGGGAATGCGGCGAGGCCGCTGTCGT
ACTGGCAGTTGGATGCGGGGCGGCGTCAGTGTGTGGAGGAGGGGAGGGAG
GGAGTCGAGGGCATGTGTGAGTACAGGTTGGTGGAGAATTAAAAGACGGA
GGGTAGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAACA
ATTTAATGGCAGCTATCGCGGTAGGAGTGGGAGTAGTTGTAGTTCCAAAA
TTATGGGAATAAACGAATATCAAAATTCATGTACAAACACAGACACCTAT
CGGTGAAGCAAAGGAAACACCCATATGTAAGTAAAGCGCGGAGTAAAGGG
AAAGCGGTTGGGAAACCAGGAACCCACCAAATAGAGAATAGATCAGGGGG
CGCGCGAAAGTGCGTATCGCCTGGCATGAGGAGAACACTGCATGGACAAA
CAAGCGACTACGTATA back to topCoding sequence (CDS) from alignment at chr3:579185..581600- >NO03G01880.1 ID=NO03G01880.1|Name=NO03G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at chr3:579185..581600- (Nannochloropsis oceanica)
ATGGGCATGACCGCAAGGCCATCGCACAGCCGCGAAGTCGGCCTGGGCAC
TTATTATGGAGATAATGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGGAACGACATG
AATGCAGGAGATGGCACTGCCGAAGAAGAGGATGCGGGACTATTAGGACT
TCCCTGGACCAATACCCACTGCCCCACGAGCCCACGCAACAGAAGCACCA
GCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGTAAT
AGCGGTTGTATAAGAACGCATTCTCCGTTGCCCTCGACATGTCTACCGGT
CGTGCAACCCTCAGGTGGCAGTAAAAGTAGAAATTTCCTACGTCGCCGCA
TAGGACTTGCAGGCGGGCTGCTACTCGCTTCTGCCTTGGTCGGCGCCGTC
GTGTACAGCGGTTGTGCGGGGCAAAACCGACGAGTAGTGCTTAGGTACAA
AGGAGAGAGCCAAGTTGGGAATACTGGCGGCGTCTTGGCCTCGCCACCAC
GGCCGGGTTTGCAAACAGTGATGGGCGCGTATGATTGTATACCTGCTGAT
CGATTGCTCGGCGGAAGGGTTGAAATTAGCAGTAGTGGGGACAAAGATGA
GGGAACGGGGCTTAATGTAGAGAAGCATGGGGGTGCCGCAGCAGCAGCAG
CCGCGGCGGTGGCAGCAGCAACAACAACAGCAGCAGCAGCAGACAAGGAC
AAAACGGACCTTGACACGCAAGGTCCCGAAGCTGATGCTGATGCCCCGTC
CAAATCGTCTACTCTTCCCACAACTTCCTCGTTTATGTCTTCCCACACTG
CTGCCGCACTATCCTCAGCAGCAGAAGCAGCAGCAGCAGTAGAAAACAAA
AGGCCCATCCCCCTTATCGGTACCAACCTCGACTACGACACCGAAGGTTA
CCTTTCCCGCTTTGCCTCCTCCATTCCTGAATCCCCCCAGATTTCCACAC
ATAAACTTATCGCCTGGGGTGGGTGTGATCCTATGGTGGCGAGCCAAATA
AGAAATTTACTGGATTGCAGGCCTGATTTCCGTGTCTATCGTTCTCGGAA
CAATCAGGGCTGTGCAGCCGGCTGGAATATTATCTTGAAATATATGGCGA
TGCATGATCGAGAAGAAATACCCTGGGCCATCATATTCAACGCCGACATG
TACACACCTCCGGGTAGTCTTGACAGATTTGGACAGGAGGTGTGGGCAGC
AATCGACGCAGATCCCTCCTTGTGTGTCGGTTTCTTCAATGCCCGAGGAG
CAGGGGTGGAGGGACGGTACTGTAGTTACGTGTACACGCGTAGGGCGCTG
GAGGTGTTGGGCCTCTTTGATGAGAATATCTACCCGGCTTATTATGAAGA
TGTGGAGATGGACGTGCGGATGGGGAGGGCAGTTGCGGCCGGGGTGTGTG
CGCCGGCGCGGTGGTTTAATTCGAGTGAGTTTGTGCATGGCAAGCCGGGC
GTGGGGAGTAAGGGGCAGAGTAGGTACGTAAGCGGGACGAAATTGATGGA
AGCGAGAATGAGAAGGGAGGGAGATGAGGAGATGCGGGCAGTAGCTCGAC
GCTGGTCGGAGAAGATAAAGAGGGGAAAGAAGGCCAGTCCTCTTTATTTG
CATCAAAAGTGGGGCTGTAGGCCAGAGAAGGAGATTGATTTGGCGACGTG
TAGGTTGCAGCACCCGTTTGGGAATGCGGCGAGGCCGCTGTCGTACTGGC
AGTTGGATGCGGGGCGGCGTCAGTGTGTGGAGGAGGGGAGGGAGGGAGTC
GAGGGCATGTGTGAGTACAGGTTGGTGGAGAATTAA back to top
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