NO03G01850.2, NO03G01850.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01850.2
Unique NameNO03G01850.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1535
Alignment locationchr3:572947..574890 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:572947..574890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G01850.2 vs.
Match: EWM29626.1 (tropinone reductase [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 2.200e-87
Identity = 160/200 (80.00%), Postives = 177/200 (88.50%), Query Frame = 0 
Query:    2 ATPPSTSSIGSPTRWRLEGKTVFITGGTKGIGKAIVEEFGALGARVFTCARSGPDLVACLKEWTSKGYEVEGMAVDLSDSIARRAVMEQVAGSFVGRLDVLVNNVGTNVRKPTVQYTQEEYHNIMDVNLRSTYHLCQLAHPLLKKGGSSCVVNVGSVAGVTAIKSGSIYAMSKAAMAQLSKNLACEWAPDGIRVNTVAPW 202
            ATPP    IGSP RWRL+G+TV  TGGTKGIGKAIVEEF +LGARVFTCARS  DL ACLKEWT+KGYEVEG+AVD+SDS ARRA+MEQVAGSFVGRLDVLVNNVGTN+RKPT QYT+++Y  IMD+NL+STYHLCQLAHPLLKK G  CV+NVGSVAGV  IKSGS+Y ++KAAM QLSKNLACEWA DGIRVNTVAPW
Sbjct:    4 ATPP----IGSPARWRLDGQTVLCTGGTKGIGKAIVEEFASLGARVFTCARSASDLAACLKEWTAKGYEVEGIAVDVSDSDARRAMMEQVAGSFVGRLDVLVNNVGTNIRKPTAQYTEDQYDKIMDINLKSTYHLCQLAHPLLKKAGKGCVINVGSVAGVIGIKSGSVYGLTKAAMVQLSKNLACEWASDGIRVNTVAPW 199
The following BLAST results are available for this feature:
BLAST of NO03G01850.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29626.12.200e-8780.00tropinone reductase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01850NO03G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01850.2NO03G01850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01850.2.cds1NO03G01850.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01850.2.cds2NO03G01850.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01850.2 ID=NO03G01850.2|Name=NO03G01850.2|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
GACTTGTGCCTCCTGTGTTCTCTGAAGCAGTGAAAGGCGGCATGAGCAGC
GAATAACGAATCGGGAACGCAGCCGGCTGATCGTGGTGGCGAGCTTCAGT
CTGCTGTGTATGAGACGCGCTGTGGCACAACCGCATCGGCCTGATTTGGC
GATAAGACATCACGAGGTCGCGACAACGCGTCCGCTCGCGATACATAGTA
CACACACGCCATAGTGTAGCATGCAAGTTGAGGACATCTCTCTCACACAT
CTCCATACAGAGACACAAGGACGCTCTATCTGACCTGCCCGTCCAGGGAC
AACGTGGAGGAGAAGTCAGCTCATCGTCGTCAGCGAGAACCTCCTGTCTC
AAACTATGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACCCGC
TGGCGGCTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGGCAT
TGGCAAGGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCTTTA
CCTGCGCTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGGACG
AGCAAAGGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAGTAT
TGCCCGCCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGAGGT
TGGATGTGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACGGTG
CAATACACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACGGAG
CACTTACCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTGGGA
GTAGTTGCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATCAAG
TCAGGCTCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAGCTGTCGAA
GAATTTGGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAACACGGTGG
CGCCCTGGTAATACACAGGGAGCGGGAGGAGGGAGAGAGGGAAGGAAGGA
GGAAGAAATGAAAGCCATTGGTGTCGGTTCATGGAAAAAGGGAGTGAGGG
GAAAGAGGGAAAGGAGCTGGGATGATCGTTGTGGAGGAACATTTTCGTAT
ATGTGCTTTTTGGTGTTCCCGTCAATCTCAACAAAATACACTCGTCGTCT
CTTTCTTCGTCTTATCAGAAGCGTAAGCATTTCTCACTCTTTTACTCCTC
TTGCCCACTCTCGGATCAGGTACATTGATACACCACTGGCCGCCCCGGTC
CTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGGATCGAACCCCCATGAA
ACGTGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGCCTTTTTGGCGA
TGCCCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTGTCGACGGCGGA
TTCACAGTTAATGGCTTCTACTAGCCAGCTAGTCATGAAAGTAAGAAAAG
AGATGTGTCCGTGTACATGTGCGTGACAGGGACCCGCAGTATGCACCAGA
AATAGCATTAGAACAACAAAAGAAAGACAAGGAAA
back to top

protein sequence of NO03G01850.2

>NO03G01850.2-protein ID=NO03G01850.2-protein|Name=NO03G01850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MATPPSTSSIGSPTRWRLEGKTVFITGGTKGIGKAIVEEFGALGARVFTC
ARSGPDLVACLKEWTSKGYEVEGMAVDLSDSIARRAVMEQVAGSFVGRLD
VLVNNVGTNVRKPTVQYTQEEYHNIMDVNLRSTYHLCQLAHPLLKKGGSS
CVVNVGSVAGVTAIKSGSIYAMSKAAMAQLSKNLACEWAPDGIRVNTVAP
W*
back to top

mRNA from alignment at chr3:572947..574890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01850.2 ID=NO03G01850.2|Name=NO03G01850.2|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at chr3:572947..574890- (Nannochloropsis oceanica)
GACTTGTGCCTCCTGTGTTCTCTGAAGCAGTGAAAGGCGGCATGAGCAGC
GAATAACGAATCGGGAACGCAGCCGGCTGATCGTGGTGGCGAGCTTCAGT
CTGCTGTGTATGAGACGCGCTGTGGCACAACCGCATCGGCCTGATTTGGC
GATAAGACATCACGAGGTCGCGACAACGCGTCCGCTCGCGATACATAGTA
CACACACGCCATAGTGTAGCATGCAAGTTGAGGACATCTCTCTCACACAT
CTCCATACAGAGACACAAGGACGCTCTATCTGACCTGCCCGTCCAGGGAC
AACGTGGAGGAGAAGTCAGCTCATCGTCGTCAGCGAGAACCTCCTGTCTC
AAACTATGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACCCGC
TGGCGGCTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGGCAT
TGGCAAGGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCTTTA
CCTGCGCTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGGACG
AGCAAAGGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAGTAT
TGCCCGCCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGAGGT
TGGATGTGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACGGTG
CAATACACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACGGAG
CACTTACCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTGGGA
GTAGTTGCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATCAAG
TCAGGTACGAGCATGTCGAGGGAGGAGTGGAGGGGGAAGGAACGGGGGGG
AGGGGTTCAACGGGGAAAAGAATGGGAGTAGATAATGGAAAGGGCGGTCT
CTCGCTGCTATTGCTTCGTGGCATTGTAGAGGAATGTTGTGTGCGAGACA
TCTCTCATTTTTGCGCACTTGAGGCCCTGAAAACGGAATAGATTTCCCGT
TCATTCCCTCGTCTCGCCTCGTCTGTCTCACACCTATTTTTACATCATTT
CCCCCCACAAAATCAGGCTCTATTTATGCCATGAGCAAGGCGGCCATGGC
CCAGCTGTCGAAGAATTTGGCGTGTGAGTGGGCACCGGACGGCATTCGAG
TCAACACGGTGGCGCCCTGGTAATACACAGGGAGCGGGAGGAGGGAGAGA
GGGAAGGAAGGAGGAAGAAATGAAAGCCATTGGTGTCGGTTCATGGAAAA
AGGGAGTGAGGGGAAAGAGGGAAAGGAGCTGGGATGATCGTTGTGGAGGA
ACATTTTCGTATATGTGCTTTTTGGTGTTCCCGTCAATCTCAACAAAATA
CACTCGTCGTCTCTTTCTTCGTCTTATCAGAAGCGTAAGCATTTCTCACT
CTTTTACTCCTCTTGCCCACTCTCGGATCAGGTACATTGATACACCACTG
GCCGCCCCGGTCCTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGGATCG
AACCCCCATGAAACGGTGCGTACGTGTCTGATATTTGGTGGGGTAGGAGG
TTGGGGTAGAGGGCAGGAGAACACTAAACGACTCCACTTTTCCAGAAAAG
GCGTGGCACGGGCATGTTGGACTCACGCACTTGCCGCCCACCACAATCCA
TTACTCATGCAGTGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGCCT
TTTTGGCGATGCCCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTGTC
GACGGCGGATTCACAGTTAATGGCTTCTACTAGCCAGCTAGTCATGAAAG
TAAGAAAAGAGATGTGTCCGTGTACATGTGCGTGACAGGGACCCGCAGTA
TGCACCAGAAATAGCATTAGAACAACAAAAGAAAGACAAGGAAA
back to top

Coding sequence (CDS) from alignment at chr3:572947..574890-

>NO03G01850.2 ID=NO03G01850.2|Name=NO03G01850.2|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr3:572947..574890- (Nannochloropsis oceanica)
ATGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACCCGCTGGCG
GCTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGGCATTGGCA
AGGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCTTTACCTGC
GCTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGGACGAGCAA
AGGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAGTATTGCCC
GCCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGAGGTTGGAT
GTGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACGGTGCAATA
CACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACGGAGCACTT
ACCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTGGGAGTAGT
TGCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATCAAGTCAGG
CTCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAGCTGTCGAAGAATT
TGGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAACACGGTGGCGCCC
TGGTAA
back to top
Synonyms
Publications