NO03G01640.1, NO03G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01640.1
Unique NameNO03G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr3:515863..517533 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:515863..517533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01640.1 vs.
Match: EWM29545.1 (hypothetical protein Naga_100006g107 [Nannochloropsis gaditana])

HSP 1 Score: 681.8 bits (1758), Expect = 1.800e-192
Identity = 374/569 (65.73%), Postives = 433/569 (76.10%), Query Frame = 0 
Query:    1 MVPCPSGLGTSA-KVVLVSMRSPPCAASSRPLPPMLLFPLALSFVLFVRPGQAFQRSQPPPTPSSSSPSTSPSSPGKRTPLPFTSRLLDSTSSSVSTPSSWPSSTSTSSSSPPFSSSPWESISPSSSSSFDFSHEDSGPFRLTFDEVMDRFIFQTAAIELQQPGGPDSARVRLVGSVHIADPTYFKALEEACADCDVVLYEMITSKGNVLTDNTDDRWPAKEQLGVELAATDALRNLASAHGLEPQLDNMHFFGKKNWYLSDITREQLCLLQRARGERALDDTTKSRFAHLQEMAQIFWDGFTSRGKVLPKFLFMR--NNLSALPFRLLRLCMWLTPAPELQLLLLDWARQYPPAGGFSKILRSMVGAAVHGDLLTLRRLAFSQMLTSSQMSPAPEVLVLERNSKVVLDVEKALKSGAKKVAVLYGGLHMKDMEAKLRRHLNFQRV--AVMEGEVGRE--------RGAQWHTAWTMPAYTAQKQVLVAFLCIALPLLHLSVGGLDWSATFGGLAKDVSQQVVSEGGGAVESPALGWQEVVLYLLRHMYIYYGLSRWVVEWEKQLFEMR 557
            M+P P G+G  A +   ++ R    +  S  +  +  +P     V  ++P Q FQR  PPP PSS  PS  PS P    PLPF+SRL +   +S ST SSWPSS          SSSPWES +  S++  D + ED+GPFRL FD+  DRF+FQTA ++LQQPG  D  RVRL+GSVHIA+P YFKALE +CADCDVVLYEMITS+GNVL D TD RWP+KEQLGVEL ATD LR LAS+HGLEPQLDNMHFFGKKNWYLSDI RE+LC LQR RGER LD   K R  H+ E+ ++FW+GFTSRGKVLPKFLF+R     SALPFR+LRLCMWLTPAPELQLLLLDWARQYPPAGG S++LRSMVGA V GD LTLRRLAF+QMLTSSQ +PAPEVLV ER+SKVVLDVE+AL++GAK V VLYGGLH+KD+EAKLR HLNF RV   + +G  G+E        +  QWHTAWTM A+T Q+Q LV  LC+ALP L+LSVGGLDWSATFGGLAKDVSQ V +E G A E+P +GWQEVVLY+LRHMYIYYGLSRWVVEWEKQLFEMR
Sbjct:    1 MMPGPCGVGGLAGRSDHIASRLSRLSTFSFSVLAVRTWPFLAMLVSHLQPAQPFQRRPPPPPPSSPPPSF-PSKP----PLPFSSRLANQ-GNSASTRSSWPSSQ--------VSSSPWESTTFLSTA--DPAPEDNGPFRLLFDQATDRFLFQTAVVDLQQPG-QDGPRVRLIGSVHIAEPAYFKALEASCADCDVVLYEMITSEGNVLRDGTDARWPSKEQLGVELQATDGLRRLASSHGLEPQLDNMHFFGKKNWYLSDIVREELCKLQRLRGERTLDAPAKGRLGHVFEVLEVFWNGFTSRGKVLPKFLFLRPGQAFSALPFRVLRLCMWLTPAPELQLLLLDWARQYPPAGGLSRVLRSMVGALVQGDFLTLRRLAFAQMLTSSQTAPAPEVLVQERDSKVVLDVEQALRTGAKDVGVLYGGLHLKDIEAKLRGHLNFTRVEGGMEKGAGGQETLKRGREAQAVQWHTAWTMQAFTRQRQALVTALCVALPALYLSVGGLDWSATFGGLAKDVSQHVATE-GTAAEAPTVGWQEVVLYMLRHMYIYYGLSRWVVEWEKQLFEMR 551
The following BLAST results are available for this feature:
BLAST of NO03G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29545.11.800e-19265.73hypothetical protein Naga_100006g107 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01640NO03G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01640.1NO03G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01640.1.cds1NO03G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01640.1 ID=NO03G01640.1|Name=NO03G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
ATGGTGCCCTGTCCCAGCGGTCTTGGTACGAGTGCTAAAGTTGTCCTCGT
TTCGATGCGGTCGCCGCCGTGTGCAGCATCATCACGCCCCTTACCGCCCA
TGCTCCTCTTCCCCCTCGCCCTGTCTTTCGTCCTCTTTGTCCGTCCAGGA
CAGGCCTTTCAACGAAGCCAGCCGCCTCCCACGCCCTCGTCCTCTTCGCC
GTCAACGTCCCCATCCTCCCCCGGAAAGCGTACTCCACTGCCCTTCACAT
CCCGCCTGCTCGATTCCACGAGCAGCAGCGTAAGCACCCCTTCCTCCTGG
CCTTCCTCCACCTCTACCTCCTCCTCTTCTCCCCCCTTTTCCTCGTCTCC
CTGGGAAAGCATCTCCCCCTCCTCCTCATCTTCTTTCGACTTTTCGCACG
AAGACAGCGGGCCTTTCCGTCTGACCTTTGATGAGGTCATGGACCGCTTC
ATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGGTGGCCCTGACAG
CGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTGACCCGACATATT
TCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTGGTGCTCTACGAA
ATGATCACCTCAAAAGGAAACGTTCTGACAGACAACACGGACGACCGTTG
GCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTACCGATGCCCTCC
GGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTGGACAACATGCAT
TTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCACGCGCGAACAACT
CTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGGACGACACGACCA
AAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATTTTTTGGGATGGA
TTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTTCATGCGAAACAA
CCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTATGTGGTTGACTC
CAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCACGGCAGTACCCT
CCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGTGGGGGCTGCGGT
GCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCTCGCAGATGCTGA
CGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTCTTGGAAAGAAAC
AGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAGTGGCGCCAAGAA
GGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACATGGAGGCCAAAT
TACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATGGAGGGGGAGGTG
GGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGACGATGCCTGCCTA
TACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTATTGCTTTGCCAT
TGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCGACGTTTGGGGGG
CTTGCAAAAGATGTGTCGCAGCAGGTAGTGTCTGAAGGAGGGGGGGCAGT
GGAGAGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGC
ATATGTACATTTATTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAG
CAGTTGTTCGAGATGCGGTAA
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protein sequence of NO03G01640.1

>NO03G01640.1-protein ID=NO03G01640.1-protein|Name=NO03G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MVPCPSGLGTSAKVVLVSMRSPPCAASSRPLPPMLLFPLALSFVLFVRPG
QAFQRSQPPPTPSSSSPSTSPSSPGKRTPLPFTSRLLDSTSSSVSTPSSW
PSSTSTSSSSPPFSSSPWESISPSSSSSFDFSHEDSGPFRLTFDEVMDRF
IFQTAAIELQQPGGPDSARVRLVGSVHIADPTYFKALEEACADCDVVLYE
MITSKGNVLTDNTDDRWPAKEQLGVELAATDALRNLASAHGLEPQLDNMH
FFGKKNWYLSDITREQLCLLQRARGERALDDTTKSRFAHLQEMAQIFWDG
FTSRGKVLPKFLFMRNNLSALPFRLLRLCMWLTPAPELQLLLLDWARQYP
PAGGFSKILRSMVGAAVHGDLLTLRRLAFSQMLTSSQMSPAPEVLVLERN
SKVVLDVEKALKSGAKKVAVLYGGLHMKDMEAKLRRHLNFQRVAVMEGEV
GRERGAQWHTAWTMPAYTAQKQVLVAFLCIALPLLHLSVGGLDWSATFGG
LAKDVSQQVVSEGGGAVESPALGWQEVVLYLLRHMYIYYGLSRWVVEWEK
QLFEMR*
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mRNA from alignment at chr3:515863..517533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01640.1 ID=NO03G01640.1|Name=NO03G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr3:515863..517533- (Nannochloropsis oceanica)
ATGGTGCCCTGTCCCAGCGGTCTTGGTACGAGTGCTAAAGTTGTCCTCGT
TTCGATGCGGTCGCCGCCGTGTGCAGCATCATCACGCCCCTTACCGCCCA
TGCTCCTCTTCCCCCTCGCCCTGTCTTTCGTCCTCTTTGTCCGTCCAGGA
CAGGCCTTTCAACGAAGCCAGCCGCCTCCCACGCCCTCGTCCTCTTCGCC
GTCAACGTCCCCATCCTCCCCCGGAAAGCGTACTCCACTGCCCTTCACAT
CCCGCCTGCTCGATTCCACGAGCAGCAGCGTAAGCACCCCTTCCTCCTGG
CCTTCCTCCACCTCTACCTCCTCCTCTTCTCCCCCCTTTTCCTCGTCTCC
CTGGGAAAGCATCTCCCCCTCCTCCTCATCTTCTTTCGACTTTTCGCACG
AAGACAGCGGGCCTTTCCGTCTGACCTTTGATGAGGTCATGGACCGCTTC
ATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGGTGGCCCTGACAG
CGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTGACCCGACATATT
TCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTGGTGCTCTACGAA
ATGATCACCTCAAAAGGAAACGTTCTGACAGACAACACGGACGACCGTTG
GCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTACCGATGCCCTCC
GGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTGGACAACATGCAT
TTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCACGCGCGAACAACT
CTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGGACGACACGACCA
AAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATTTTTTGGGATGGA
TTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTTCATGCGAAACAA
CCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTATGTGGTTGACTC
CAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCACGGCAGTACCCT
CCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGTGGGGGCTGCGGT
GCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCTCGCAGATGCTGA
CGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTCTTGGAAAGAAAC
AGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAGTGGCGCCAAGAA
GGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACATGGAGGCCAAAT
TACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATGGAGGGGGAGGTG
GGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGACGATGCCTGCCTA
TACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTATTGCTTTGCCAT
TGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCGACGTTTGGGGGG
CTTGCAAAAGATGTGTCGCAGCAGGTAGTGTCTGAAGGAGGGGGGGCAGT
GGAGAGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGC
ATATGTACATTTATTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAG
CAGTTGTTCGAGATGCGGTAA
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Coding sequence (CDS) from alignment at chr3:515863..517533-

>NO03G01640.1 ID=NO03G01640.1|Name=NO03G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr3:515863..517533- (Nannochloropsis oceanica)
ATGGTGCCCTGTCCCAGCGGTCTTGGTACGAGTGCTAAAGTTGTCCTCGT
TTCGATGCGGTCGCCGCCGTGTGCAGCATCATCACGCCCCTTACCGCCCA
TGCTCCTCTTCCCCCTCGCCCTGTCTTTCGTCCTCTTTGTCCGTCCAGGA
CAGGCCTTTCAACGAAGCCAGCCGCCTCCCACGCCCTCGTCCTCTTCGCC
GTCAACGTCCCCATCCTCCCCCGGAAAGCGTACTCCACTGCCCTTCACAT
CCCGCCTGCTCGATTCCACGAGCAGCAGCGTAAGCACCCCTTCCTCCTGG
CCTTCCTCCACCTCTACCTCCTCCTCTTCTCCCCCCTTTTCCTCGTCTCC
CTGGGAAAGCATCTCCCCCTCCTCCTCATCTTCTTTCGACTTTTCGCACG
AAGACAGCGGGCCTTTCCGTCTGACCTTTGATGAGGTCATGGACCGCTTC
ATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGGTGGCCCTGACAG
CGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTGACCCGACATATT
TCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTGGTGCTCTACGAA
ATGATCACCTCAAAAGGAAACGTTCTGACAGACAACACGGACGACCGTTG
GCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTACCGATGCCCTCC
GGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTGGACAACATGCAT
TTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCACGCGCGAACAACT
CTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGGACGACACGACCA
AAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATTTTTTGGGATGGA
TTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTTCATGCGAAACAA
CCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTATGTGGTTGACTC
CAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCACGGCAGTACCCT
CCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGTGGGGGCTGCGGT
GCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCTCGCAGATGCTGA
CGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTCTTGGAAAGAAAC
AGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAGTGGCGCCAAGAA
GGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACATGGAGGCCAAAT
TACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATGGAGGGGGAGGTG
GGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGACGATGCCTGCCTA
TACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTATTGCTTTGCCAT
TGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCGACGTTTGGGGGG
CTTGCAAAAGATGTGTCGCAGCAGGTAGTGTCTGAAGGAGGGGGGGCAGT
GGAGAGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGC
ATATGTACATTTATTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAG
CAGTTGTTCGAGATGCGGTAA
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Synonyms
Publications