NO03G01610.1, NO03G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01610.1
Unique NameNO03G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2191
Alignment locationchr3:510422..512612 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:510422..512612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01610.1 vs.
Match: EWM29579.1 (lsg1p [Nannochloropsis gaditana])

HSP 1 Score: 379.8 bits (974), Expect = 1.900e-101
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 0 
Query:   17 MRRHQQQGPAAVSDREIKELEDRKVLSSVLEMSSLDDFLDTAMMAQRDFSAIKERDLLILDATTGGLTSILPRGQVKPGAKKGTTSLAFRQLKVPRRPAWHTGMTAMELDRAEKDRFLEWRREIAGLEEQSGERAKVTPFEKNLEVWRQLWRVMERSHVVVQIVDARDPLFYYSEDLHAYAAEMQPPRRRLILVNKADYLTAAQREKWAELFKKRGWHYGFFSARKAQEVLTIEARKER 256
            MR+HQQQGPA V   E ++L+ RK LSSVLEM+SLDDFLDTAMMAQRDFSAIKERDLL+LDA TGGLTSILPRGQV PG  KG T+ AFRQLKVPRRP WHTGM+A  LDRAEK  FLEWRREIA LEE SGERAKVTPFEKNLEVWRQLWRV+ERSHV+VQIVDARDPLFYYSEDLHAYAAEM P R  L+LVNKADYLT AQR +WA  F+KRGW++ FFSAR AQE+LT++ARKER
Sbjct:    1 MRKHQQQGPAVVGALEQQQLDGRKQLSSVLEMNSLDDFLDTAMMAQRDFSAIKERDLLVLDAKTGGLTSILPRGQVTPGTDKGMTTFAFRQLKVPRRPKWHTGMSAAALDRAEKASFLEWRREIAQLEETSGERAKVTPFEKNLEVWRQLWRVLERSHVIVQIVDARDPLFYYSEDLHAYAAEMHPARECLVLVNKADYLTPAQRGEWAAYFQKRGWNHAFFSARSAQELLTVQARKER 239
The following BLAST results are available for this feature:
BLAST of NO03G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29579.11.900e-10179.92lsg1p [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01610NO03G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01610.1NO03G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01610.1.cds1NO03G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01610.1 ID=NO03G01610.1|Name=NO03G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp
ACAGGAAAAGCCATGCCGCCTAAATCCAAGAAGGGAAATGCCAAGGTGGG
GCGGGCTTTAATGCGGCGGCATCAGCAGCAAGGCCCCGCGGCCGTTAGCG
ACCGCGAAATCAAGGAATTGGAAGACCGCAAGGTGCTCTCATCGGTCCTG
GAAATGAGCTCCCTCGACGACTTTTTAGACACAGCTATGATGGCCCAACG
GGACTTTTCGGCCATCAAAGAGCGAGACTTGCTTATTCTTGACGCGACTA
CAGGTGGATTAACCAGTATTTTGCCACGGGGCCAGGTGAAACCGGGAGCG
AAGAAGGGGACGACAAGCCTAGCGTTTCGACAGCTCAAGGTGCCTCGTCG
ACCGGCCTGGCACACGGGCATGACTGCCATGGAGCTAGATCGGGCGGAGA
AGGATAGATTTTTGGAGTGGCGGCGGGAGATTGCAGGGTTGGAAGAGCAA
TCGGGGGAAAGGGCGAAGGTGACGCCGTTTGAAAAGAATCTAGAAGTGTG
GCGGCAGCTATGGAGGGTGATGGAGAGGAGTCATGTGGTGGTGCAAATTG
TGGATGCTCGCGATCCATTATTTTATTATTCGGAGGACTTGCATGCATAC
GCGGCGGAGATGCAGCCGCCCCGGCGGAGGTTGATATTGGTGAATAAAGC
TGATTATTTGACAGCGGCGCAGAGGGAGAAGTGGGCTGAGCTTTTCAAGA
AAAGGGGTTGGCATTATGGATTCTTCTCGGCAAGGAAGGCACAGGAGGTA
TTGACGATTGAGGCACGGAAGGAAAGAATGCGAGAGATGAAGGAAATAAT
AGAGGAGGGTTTTGAAGAAGAGGAGTTGGGTGACGAGGGGGGGGAAGAGG
AGAAGGAGGAAGAAGAGGAGGAAGCATCTGCTGCAGCACTTGAAGAAGTG
GAAAGTGGGGAGGACGAAGAGGAAGACGAGACGGATGCCGGAAAGGATTT
GAGCGCAATCAGTACCACCCGGATTTTGACAAGAGACGATTTGATAAATC
GGTTGAAATGTTTGACTGCAACTGCTGCCAAGTCGTTTGCTGAGTGTGCG
GCCGCTGCTGGTCATGCTCCCCCGAAACCAACGATTGGCATGGTGGGCTT
TCCGAACGTGGGCAAGTCCTCGGTGATTAACGTGTTGATGGGTGTGACGG
CTTTGGACCACGATAAGGTACGTGTGGCCGTGTCGAGCACCCCGGGAAAG
ACGAAGCATTTCCAGACCCTGCCGTTGGACGAGGACACCATGTTGTGCGA
CTGCCCGGGGCTGGTTTTTCCCTCCTTTGTTGCCACCAGCGCCGACATGG
TGTGTGCGGGCGTGTTACCCATCAACCAGCTGAGGGATCACATGGCTCCG
GTGGACTTAGTCTGCCGCCGAGTTCCCGGGCCGTTGCTGCGAAGCTACTA
TGGGTTGAAGGGGGAAGGGACAACCACCTTCGAACCATCCTTGAAAGCCA
CCTGCAGTACCCCCAGCAGCAGCAGCGGCGGCGGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATAGGACTCCTGTACCAATTGGCAGCACGACTGCGGT
GCAGACAGCAAGGGAGTTTTTGGGGGATCTGTGCGAGGCGCGGAGTTACT
GGACGCAAGGCTCGGGGGTGGCTGATGTGAATAGAGCGGCGAGGATGGTG
TTGAAAGAGTACGTGGAGGGGAGGTTAGTCTACTGCCATCCTCCCCCCGG
ATTGAACGAGGAGGAGGCCGAGGCTTTCACTCGGGAGACACGGGTGTTGC
TGAGTGCGGATGACGAGAAGTTGGATGAGCGATTGAGGGAAATGACGGTC
AAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGGAGGAGGAAG
CGATACCCTCCGAGGGGCCCCGGAAGGAGGGGCGGATGGAAAGAGAAAGG
AAGAAGAGGAGGAAGATTTTGATTTTGAGGGGGAAAAGGGAGGCCGACCG
GCGAAGGTGAGGGTAAGGCCGTCGAAGAAGTGGGGGAAGAAGGGGAAAAA
GTTGAGGGATAAAAATCCGTACGATGATGAGGAGGAGGTGTTGACGGGGC
GGGGAGGAAAGACGGCGGGGGCGCGTATACAGGGGAGGAAGGGTGTGGGA
AGTGGGGGGAGTGGGGAGTTTACACGGGTGACGATGCCGCATTATGCGAG
CAAGGTTTTGAGGGGAGGGGGAGGGGGAGGGACGGTTTGAG
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protein sequence of NO03G01610.1

>NO03G01610.1-protein ID=NO03G01610.1-protein|Name=NO03G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MPPKSKKGNAKVGRALMRRHQQQGPAAVSDREIKELEDRKVLSSVLEMSS
LDDFLDTAMMAQRDFSAIKERDLLILDATTGGLTSILPRGQVKPGAKKGT
TSLAFRQLKVPRRPAWHTGMTAMELDRAEKDRFLEWRREIAGLEEQSGER
AKVTPFEKNLEVWRQLWRVMERSHVVVQIVDARDPLFYYSEDLHAYAAEM
QPPRRRLILVNKADYLTAAQREKWAELFKKRGWHYGFFSARKAQEVLTIE
ARKERMREMKEIIEEGFEEEELGDEGGEEEKEEEEEEASAAALEEVESGE
DEEEDETDAGKDLSAISTTRILTRDDLINRLKCLTATAAKSFAECAAAAG
HAPPKPTIGMVGFPNVGKSSVINVLMGVTALDHDKVRVAVSSTPGKTKHF
QTLPLDEDTMLCDCPGLVFPSFVATSADMVCAGVLPINQLRDHMAPVDLV
CRRVPGPLLRSYYGLKGEGTTTFEPSLKATCSTPSSSSGGGSSSSSSSSS
NRTPVPIGSTTAVQTAREFLGDLCEARSYWTQGSGVADVNRAARMVLKEY
VEGRLVYCHPPPGLNEEEAEAFTRETRVLLSADDEKLDERLREMTVKEEE
EEEEEEGEEGGGSDTLRGAPEGGADGKRKEEEEEDFDFEGEKGGRPAKVR
VRPSKKWGKKGKKLRDKNPYDDEEEVLTGRGGKTAGARIQGRKGVGSGGS
GEFTRVTMPHYASKVLRGGGGGGTV*
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mRNA from alignment at chr3:510422..512612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01610.1 ID=NO03G01610.1|Name=NO03G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp|location=Sequence derived from alignment at chr3:510422..512612+ (Nannochloropsis oceanica)
ACAGGAAAAGCCATGCCGCCTAAATCCAAGAAGGGAAATGCCAAGGTGGG
GCGGGCTTTAATGCGGCGGCATCAGCAGCAAGGCCCCGCGGCCGTTAGCG
ACCGCGAAATCAAGGAATTGGAAGACCGCAAGGTGCTCTCATCGGTCCTG
GAAATGAGCTCCCTCGACGACTTTTTAGACACAGCTATGATGGCCCAACG
GGACTTTTCGGCCATCAAAGAGCGAGACTTGCTTATTCTTGACGCGACTA
CAGGTGGATTAACCAGTATTTTGCCACGGGGCCAGGTGAAACCGGGAGCG
AAGAAGGGGACGACAAGCCTAGCGTTTCGACAGCTCAAGGTGCCTCGTCG
ACCGGCCTGGCACACGGGCATGACTGCCATGGAGCTAGATCGGGCGGAGA
AGGATAGATTTTTGGAGTGGCGGCGGGAGATTGCAGGGTTGGAAGAGCAA
TCGGGGGAAAGGGCGAAGGTGACGCCGTTTGAAAAGAATCTAGAAGTGTG
GCGGCAGCTATGGAGGGTGATGGAGAGGAGTCATGTGGTGGTGCAAATTG
TGGATGCTCGCGATCCATTATTTTATTATTCGGAGGACTTGCATGCATAC
GCGGCGGAGATGCAGCCGCCCCGGCGGAGGTTGATATTGGTGAATAAAGC
TGATTATTTGACAGCGGCGCAGAGGGAGAAGTGGGCTGAGCTTTTCAAGA
AAAGGGGTTGGCATTATGGATTCTTCTCGGCAAGGAAGGCACAGGAGGTA
TTGACGATTGAGGCACGGAAGGAAAGAATGCGAGAGATGAAGGAAATAAT
AGAGGAGGGTTTTGAAGAAGAGGAGTTGGGTGACGAGGGGGGGGAAGAGG
AGAAGGAGGAAGAAGAGGAGGAAGCATCTGCTGCAGCACTTGAAGAAGTG
GAAAGTGGGGAGGACGAAGAGGAAGACGAGACGGATGCCGGAAAGGATTT
GAGCGCAATCAGTACCACCCGGATTTTGACAAGAGACGATTTGATAAATC
GGTTGAAATGTTTGACTGCAACTGCTGCCAAGTCGTTTGCTGAGTGTGCG
GCCGCTGCTGGTCATGCTCCCCCGAAACCAACGATTGGCATGGTGGGCTT
TCCGAACGTGGGCAAGTCCTCGGTGATTAACGTGTTGATGGGTGTGACGG
CTTTGGACCACGATAAGGTACGTGTGGCCGTGTCGAGCACCCCGGGAAAG
ACGAAGCATTTCCAGACCCTGCCGTTGGACGAGGACACCATGTTGTGCGA
CTGCCCGGGGCTGGTTTTTCCCTCCTTTGTTGCCACCAGCGCCGACATGG
TGTGTGCGGGCGTGTTACCCATCAACCAGCTGAGGGATCACATGGCTCCG
GTGGACTTAGTCTGCCGCCGAGTTCCCGGGCCGTTGCTGCGAAGCTACTA
TGGGTTGAAGGGGGAAGGGACAACCACCTTCGAACCATCCTTGAAAGCCA
CCTGCAGTACCCCCAGCAGCAGCAGCGGCGGCGGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATAGGACTCCTGTACCAATTGGCAGCACGACTGCGGT
GCAGACAGCAAGGGAGTTTTTGGGGGATCTGTGCGAGGCGCGGAGTTACT
GGACGCAAGGCTCGGGGGTGGCTGATGTGAATAGAGCGGCGAGGATGGTG
TTGAAAGAGTACGTGGAGGGGAGGTTAGTCTACTGCCATCCTCCCCCCGG
ATTGAACGAGGAGGAGGCCGAGGCTTTCACTCGGGAGACACGGGTGTTGC
TGAGTGCGGATGACGAGAAGTTGGATGAGCGATTGAGGGAAATGACGGTC
AAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGGAGGAGGAAG
CGATACCCTCCGAGGGGCCCCGGAAGGAGGGGCGGATGGAAAGAGAAAGG
AAGAAGAGGAGGAAGATTTTGATTTTGAGGGGGAAAAGGGAGGCCGACCG
GCGAAGGTGAGGGTAAGGCCGTCGAAGAAGTGGGGGAAGAAGGGGAAAAA
GTTGAGGGATAAAAATCCGTACGATGATGAGGAGGAGGTGTTGACGGGGC
GGGGAGGAAAGACGGCGGGGGCGCGTATACAGGGGAGGAAGGGTGTGGGA
AGTGGGGGGAGTGGGGAGTTTACACGGGTGACGATGCCGCATTATGCGAG
CAAGGTTTTGAGGGGAGGGGGAGGGGGAGGGACGGTTTGAG
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Coding sequence (CDS) from alignment at chr3:510422..512612+

>NO03G01610.1 ID=NO03G01610.1|Name=NO03G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at chr3:510422..512612+ (Nannochloropsis oceanica)
ATGCCGCCTAAATCCAAGAAGGGAAATGCCAAGGTGGGGCGGGCTTTAAT
GCGGCGGCATCAGCAGCAAGGCCCCGCGGCCGTTAGCGACCGCGAAATCA
AGGAATTGGAAGACCGCAAGGTGCTCTCATCGGTCCTGGAAATGAGCTCC
CTCGACGACTTTTTAGACACAGCTATGATGGCCCAACGGGACTTTTCGGC
CATCAAAGAGCGAGACTTGCTTATTCTTGACGCGACTACAGGTGGATTAA
CCAGTATTTTGCCACGGGGCCAGGTGAAACCGGGAGCGAAGAAGGGGACG
ACAAGCCTAGCGTTTCGACAGCTCAAGGTGCCTCGTCGACCGGCCTGGCA
CACGGGCATGACTGCCATGGAGCTAGATCGGGCGGAGAAGGATAGATTTT
TGGAGTGGCGGCGGGAGATTGCAGGGTTGGAAGAGCAATCGGGGGAAAGG
GCGAAGGTGACGCCGTTTGAAAAGAATCTAGAAGTGTGGCGGCAGCTATG
GAGGGTGATGGAGAGGAGTCATGTGGTGGTGCAAATTGTGGATGCTCGCG
ATCCATTATTTTATTATTCGGAGGACTTGCATGCATACGCGGCGGAGATG
CAGCCGCCCCGGCGGAGGTTGATATTGGTGAATAAAGCTGATTATTTGAC
AGCGGCGCAGAGGGAGAAGTGGGCTGAGCTTTTCAAGAAAAGGGGTTGGC
ATTATGGATTCTTCTCGGCAAGGAAGGCACAGGAGGTATTGACGATTGAG
GCACGGAAGGAAAGAATGCGAGAGATGAAGGAAATAATAGAGGAGGGTTT
TGAAGAAGAGGAGTTGGGTGACGAGGGGGGGGAAGAGGAGAAGGAGGAAG
AAGAGGAGGAAGCATCTGCTGCAGCACTTGAAGAAGTGGAAAGTGGGGAG
GACGAAGAGGAAGACGAGACGGATGCCGGAAAGGATTTGAGCGCAATCAG
TACCACCCGGATTTTGACAAGAGACGATTTGATAAATCGGTTGAAATGTT
TGACTGCAACTGCTGCCAAGTCGTTTGCTGAGTGTGCGGCCGCTGCTGGT
CATGCTCCCCCGAAACCAACGATTGGCATGGTGGGCTTTCCGAACGTGGG
CAAGTCCTCGGTGATTAACGTGTTGATGGGTGTGACGGCTTTGGACCACG
ATAAGGTACGTGTGGCCGTGTCGAGCACCCCGGGAAAGACGAAGCATTTC
CAGACCCTGCCGTTGGACGAGGACACCATGTTGTGCGACTGCCCGGGGCT
GGTTTTTCCCTCCTTTGTTGCCACCAGCGCCGACATGGTGTGTGCGGGCG
TGTTACCCATCAACCAGCTGAGGGATCACATGGCTCCGGTGGACTTAGTC
TGCCGCCGAGTTCCCGGGCCGTTGCTGCGAAGCTACTATGGGTTGAAGGG
GGAAGGGACAACCACCTTCGAACCATCCTTGAAAGCCACCTGCAGTACCC
CCAGCAGCAGCAGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AATAGGACTCCTGTACCAATTGGCAGCACGACTGCGGTGCAGACAGCAAG
GGAGTTTTTGGGGGATCTGTGCGAGGCGCGGAGTTACTGGACGCAAGGCT
CGGGGGTGGCTGATGTGAATAGAGCGGCGAGGATGGTGTTGAAAGAGTAC
GTGGAGGGGAGGTTAGTCTACTGCCATCCTCCCCCCGGATTGAACGAGGA
GGAGGCCGAGGCTTTCACTCGGGAGACACGGGTGTTGCTGAGTGCGGATG
ACGAGAAGTTGGATGAGCGATTGAGGGAAATGACGGTCAAGGAAGAGGAG
GAGGAGGAGGAGGAGGAAGGGGAGGAGGGAGGAGGAAGCGATACCCTCCG
AGGGGCCCCGGAAGGAGGGGCGGATGGAAAGAGAAAGGAAGAAGAGGAGG
AAGATTTTGATTTTGAGGGGGAAAAGGGAGGCCGACCGGCGAAGGTGAGG
GTAAGGCCGTCGAAGAAGTGGGGGAAGAAGGGGAAAAAGTTGAGGGATAA
AAATCCGTACGATGATGAGGAGGAGGTGTTGACGGGGCGGGGAGGAAAGA
CGGCGGGGGCGCGTATACAGGGGAGGAAGGGTGTGGGAAGTGGGGGGAGT
GGGGAGTTTACACGGGTGACGATGCCGCATTATGCGAGCAAGGTTTTGAG
GGGAGGGGGAGGGGGAGGGACGGTTTGA
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Synonyms
Publications