NO03G01570.2, NO03G01570.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01570.2
Unique NameNO03G01570.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr3:483948..486007 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:483948..486007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01570.2 vs.
Match: EWM29599.1 (phosphatidylinositol n-acetylglucosaminyltransferase subunit [Nannochloropsis gaditana])

HSP 1 Score: 438.0 bits (1125), Expect = 3.400e-119
Identity = 245/353 (69.41%), Postives = 273/353 (77.34%), Query Frame = 0 
Query:   63 MALYARQPFPDNHVPDSFLDKLVTNAGISRPELRYIFLRATAVTQQISVVVVFLMAFLYSSENILPLPLLLATDAGLLLGGYLLAACIHPRRMLQLRTLLSTCGWITLCAACLRVIAPVLRTLTVSYSDDTIYALALVLSGLHLVFHDYGAAWSLSSSLFCSSSFSSPASFTVRATK---VAAGIEGNENDDEDEDKDISDVSQSSCQAKTATAEAAAVAILLTSPSQFHGTFSLNAALFAAVLLASRLESNEQVFGFVFLAIELFAFFPLARHLAHRRSTTLHLLVALGLVVAATSALAAAVEHRPLLVMYLIVVVFVSLVCPVWLQHIHQYKFTIQGPWDIASVEGTGGED 413
            MALY RQPFPDNHVPDSFLDKLVTN G+SRP+L  IFL ATAVTQQISVVV+FLMAF+YS    L LPL+LATDA LL+GGY LAAC+HPRRML   TLLST  W++LCAACLR++APVLRTLTVSYSDDTIYALAL+LSGLHLVF+DYGAAW  S S    S  S+ +S  +  ++   + A + GN                +  +A  A  E  A A LL SP+ FHGTFSLNAA FAAVLLASRLESNE+VFGFVFLAI+LFAFFPL  HLA RRS TLHLLVALGLV  AT ALA A EHR LLVMYL+ V FVS VCPVWLQHIH+YKFTIQGPWD+ASVEG GGED
Sbjct:    1 MALYIRQPFPDNHVPDSFLDKLVTNGGVSRPKLIPIFLGATAVTQQISVVVIFLMAFVYSYRKSLSLPLVLATDAVLLVGGYSLAACVHPRRMLCFHTLLSTILWVSLCAACLRIVAPVLRTLTVSYSDDTIYALALLLSGLHLVFYDYGAAWP-SQSSSSPSGLSADSSLDLNVSEGGGIGASVNGNR--------------PNLPEAGAARDEPGAAAALLASPAHFHGTFSLNAAFFAAVLLASRLESNEEVFGFVFLAIQLFAFFPLGHHLARRRSMTLHLLVALGLVATATCALAMAPEHRSLLVMYLMGVGFVSFVCPVWLQHIHKYKFTIQGPWDVASVEGAGGED 338
The following BLAST results are available for this feature:
BLAST of NO03G01570.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29599.13.400e-11969.41phosphatidylinositol n-acetylglucosaminyltransfera... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01570NO03G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01570.2NO03G01570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01570.2.cds1NO03G01570.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01570.2.cds2NO03G01570.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01570.2.cds3NO03G01570.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01570.2.cds4NO03G01570.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01570.2 ID=NO03G01570.2|Name=NO03G01570.2|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
AAGCACGGAGTGGGAAACCCCGAGTCGATAGAACGATGATCATCATCACA
CCCCAGCCCGCACTTGCTTTCTGTAACGTCGTTACATTCCCCCAAGCACA
GGTACACCAATGCCGGAATGGCACGTCCCTAACGACCACCACACTGTGCA
AGGCGAAATGGTACGTGCTTTGGGATGTGGCCTGAGCAGTACAAGCTTCC
TCCTAGCCTCACTCAGGCAGCCCAGAGTAATCGCTGAAGAGTCTGAGCGA
ACGCTCCTGCGGTCGTCGTTGTTGGCCACTCTTCCCACACGAAAATACTG
GGTCCATGATGCCTGAGGGCTGCTTTGTCACGCTGTTGTGGCCCTGATAG
GATGGTCCTGACCCAGGAGTGTCTCTTTTGCTGAACCTTGGTGTCCTTCC
CTCCCTCCCTCCGTCCCACCCTCAGGTTGAAAGTGTCATGACGACCACCA
AAGACACATGCACACGGCAGCGTCTAAAGTCACCGCCGGTGGGACCTACG
GGTGCCGGCAGTCTGATACACGCCCATTCCCCTCAACTTTATCATGGGCC
ACAACCACCACCATCCCCGCGGCCCCCATCCCTATCAATCACCCCTGGCC
GGTCTCCCGCCGTCAAATGGAAGATGGCCTTGTACGCTCGACAGCCATTC
CCCGATAACCACGTGCCGGACAGCTTTTTGGATAAGCTTGTCACCAACGC
TGGCATCTCGCGGCCCGAGCTTCGGTATATTTTTTTGCGGGCCACAGCCG
TCACGCAGCAAATCAGCGTTGTGGTCGTATTCTTGATGGCCTTCCTCTAC
TCCTCCGAAAACATCCTTCCCCTCCCCCTCCTCCTCGCCACCGACGCCGG
CCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATCCATCCCCGACGAA
TGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTGGATCACGTTGTGT
GCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGACATTGACGGTGTC
GTACTCTGACGACACTATCTATGCATTGGCTCTAGTTCTTTCAGGGTTGC
ATCTGGTATTTCACGACTATGGTGCTGCATGGTCTTTATCTTCGTCTTTG
TTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTCGAGCGAC
AAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGACGACGAGGATGAGG
ACAAGGACATATCTGACGTCTCTCAAAGCTCATGTCAAGCAAAAACCGCA
ACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCTCCCCATCTCAGTT
CCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCTTG
CGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTTTCTAGCC
ATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATTTGGCCCACCGACG
ATCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGCGA
CGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGTAATGTAT
TTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAACA
TATCCATCAATATAAATTTACGATCCAGGGTCCTTGGGATATTGCATCAG
TGGAGGGCACCGGGGGAGAAGATTCCTAGGTGAGCCGAAACTGTGTAAGA
TGCGGAAAGTGCAGTTTGAAAATAGAGTAAAGAGATAGAAACAAATGTAT
ATTGTAGG
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protein sequence of NO03G01570.2

>NO03G01570.2-protein ID=NO03G01570.2-protein|Name=NO03G01570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MTTTKDTCTRQRLKSPPVGPTGAGSLIHAHSPQLYHGPQPPPSPRPPSLS
ITPGRSPAVKWKMALYARQPFPDNHVPDSFLDKLVTNAGISRPELRYIFL
RATAVTQQISVVVVFLMAFLYSSENILPLPLLLATDAGLLLGGYLLAACI
HPRRMLQLRTLLSTCGWITLCAACLRVIAPVLRTLTVSYSDDTIYALALV
LSGLHLVFHDYGAAWSLSSSLFCSSSFSSPASFTVRATKVAAGIEGNEND
DEDEDKDISDVSQSSCQAKTATAEAAAVAILLTSPSQFHGTFSLNAALFA
AVLLASRLESNEQVFGFVFLAIELFAFFPLARHLAHRRSTTLHLLVALGL
VVAATSALAAAVEHRPLLVMYLIVVVFVSLVCPVWLQHIHQYKFTIQGPW
DIASVEGTGGEDS*
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mRNA from alignment at chr3:483948..486007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01570.2 ID=NO03G01570.2|Name=NO03G01570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at chr3:483948..486007- (Nannochloropsis oceanica)
AAGCACGGAGTGGGAAACCCCGAGTCGATAGAACGATGATCATCATCACA
CCCCAGCCCGCACTTGCTTTCTGTAACGTCGTTACATTCCCCCAAGCACA
GGTACACCAATGCCGGAATGGCACGTCCCTAACGACCACCACACTGTGCA
AGGCGAAATGGTACGTGCTTTGGGATGTGGCCTGAGCAGTACAAGCTTCC
TCCTAGCCTCACTCAGGCAGCCCAGAGTAATCGCTGAAGAGTCTGAGCGA
ACGCTCCTGCGGTCGTCGTTGTTGGCCACTCTTCCCACACGAAAATACTG
GGTCCATGATGCCTGAGGGCTGCTTTGTCACGCTGTTGTGGCCCTGATAG
GATGGTCCTGACCCAGGAGTGTCTCTTTTGCTGAACCTTGGTGTCCTTCC
CTCCCTCCCTCCGTCCCACCCTCAGGTTGAAAGTGTCATGACGACCACCA
AAGACACATGCACACGGCAGCGTCTAAAGTCACCGCCGGTGGGACCTACG
GGTGCCGGCAGTCTGGTAAGAACGGTGGTTGTCTATTTTACTGTTGGCCC
ATCTAGTCTTGTCCTTACCGGCGCGATCAACGTACCCACAGATACACGCC
CATTCCCCTCAACTTTATCATGGGCCACAACCACCACCATCCCCGCGGCC
CCCATCCCTATCAATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGA
TGGCCTTGTACGCTCGACAGCCATTCCCCGATAACCACGTGCCGGACAGC
TTTTTGGATAAGCTTGTCACCAACGGTATGTCCCGCGAAATCATGATTCC
GCTCGCTCTCTGTGCCACCTTCCCCAATGTCTCCAGCGCAACGGCGTCTG
ATTCTATGATCAACCAATCGAAAAAATCACCTCACTCTCTGCCCTCTATA
CGCAGCTGGCATCTCGCGGCCCGAGCTTCGGTATATTTTTTTGCGGGCCA
CAGCCGTCACGCAGCAAATCAGCGTTGTGGTCGTATTCTTGGTAAGTCTC
CACATTCCATCCCATCTCATCTCCTTCTTCCAATCCTCCCTATTCACAAT
CTCCTTTTCACTTCCTTTCCGCAATTTTTACATCTAGATGGCCTTCCTCT
ACTCCTCCGAAAACATCCTTCCCCTCCCCCTCCTCCTCGCCACCGACGCC
GGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATCCATCCCCGACG
AATGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTGGATCACGTTGT
GTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGACATTGACGGTG
TCGTACTCTGACGACACTATCTATGCATTGGCTCTAGTTCTTTCAGGGTT
GCATCTGGTATTTCACGACTATGGTGCTGCATGGTCTTTATCTTCGTCTT
TGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTCGAGCG
ACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGACGACGAGGATGA
GGACAAGGACATATCTGACGTCTCTCAAAGCTCATGTCAAGCAAAAACCG
CAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCTCCCCATCTCAG
TTCCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCT
TGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTTTCTAG
CCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATTTGGCCCACCGA
CGATCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGC
GACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGTAATGT
ATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAA
CATATCCATCAATATAAATTTACGATCCAGGGTCCTTGGGATATTGCATC
AGTGGAGGGCACCGGGGGAGAAGATTCCTAGGTGAGCCGAAACTGTGTAA
GATGCGGAAAGTGCAGTTTGAAAATAGAGTAAAGAGATAGAAACAAATGT
ATATTGTAGG
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Coding sequence (CDS) from alignment at chr3:483948..486007-

>NO03G01570.2 ID=NO03G01570.2|Name=NO03G01570.2|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr3:483948..486007- (Nannochloropsis oceanica)
ATGACGACCACCAAAGACACATGCACACGGCAGCGTCTAAAGTCACCGCC
GGTGGGACCTACGGGTGCCGGCAGTCTGATACACGCCCATTCCCCTCAAC
TTTATCATGGGCCACAACCACCACCATCCCCGCGGCCCCCATCCCTATCA
ATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGATGGCCTTGTACGC
TCGACAGCCATTCCCCGATAACCACGTGCCGGACAGCTTTTTGGATAAGC
TTGTCACCAACGCTGGCATCTCGCGGCCCGAGCTTCGGTATATTTTTTTG
CGGGCCACAGCCGTCACGCAGCAAATCAGCGTTGTGGTCGTATTCTTGAT
GGCCTTCCTCTACTCCTCCGAAAACATCCTTCCCCTCCCCCTCCTCCTCG
CCACCGACGCCGGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATC
CATCCCCGACGAATGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTG
GATCACGTTGTGTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGA
CATTGACGGTGTCGTACTCTGACGACACTATCTATGCATTGGCTCTAGTT
CTTTCAGGGTTGCATCTGGTATTTCACGACTATGGTGCTGCATGGTCTTT
ATCTTCGTCTTTGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTA
CGGTTCGAGCGACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGAC
GACGAGGATGAGGACAAGGACATATCTGACGTCTCTCAAAGCTCATGTCA
AGCAAAAACCGCAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCT
CCCCATCTCAGTTCCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCC
GCTGTGCTCCTTGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATT
TGTCTTTCTAGCCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATT
TGGCCCACCGACGATCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTG
GTTGTGGCGGCGACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCT
GTTGGTAATGTATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAG
TGTGGTTACAACATATCCATCAATATAAATTTACGATCCAGGGTCCTTGG
GATATTGCATCAGTGGAGGGCACCGGGGGAGAAGATTCCTAG
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Synonyms
Publications