NO03G01330.1, NO03G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01330.1
Unique NameNO03G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr3:416333..418334 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:416333..418334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01330.1 vs.
Match: EWM29577.1 (trna nucleotidyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 622.5 bits (1604), Expect = 1.500e-174
Identity = 356/604 (58.94%), Postives = 435/604 (72.02%), Query Frame = 0 
Query:   38 PTVTVVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLK-----GDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMATTTTTAAAAAAAAAATMAVQEADNPGIGGGGV---KGGENSNEQR-VRLEAGMVLRELKELWRTGLDLACARELAI-------TFEEKLEISAAVT-TLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQKGPMVGQVMEAQIEWQLQHPKEGVEALTEHLKGLMA 625
            PT T +P  I LT VE+HLF LL  A A+  +GTVLRVAGGWVRDKLLGKESDDVD+ALDN+SGA+FA+ LN  LQ +G ETRSIGVI ANP+QSKHLETARVLVLGHWIDFTNLRTETYRADSRIP+++FG+A +DA RRDFTIN+LFYNLQT  VED TG+GL+DLL P G IRTPLPALTTFLDDPLRLLRA+RF++RFALPLD +IV AA++ +LQ AL+ KVSRERVG+EVEGMLSGKDARPA+A EMLV+LGL+DV+F +PEE+K ++ P  G +GWA+ GL  VRM N LLM RE  G+ +     G +        ++   +Q +R + AY +PRREHRL FL+AML  W  H   E++K V        EK++ +VQWF+REALK RAKDAED+T L G LDR Q+L+ +M   +  A          M   +A     G   V   +  E  N  R  RLEAG +LR+LK LWRTGLD+ACARE A        T E   + +  ++ TLKA+     EV  RY+ T +A++ MGLD IW LRPLLDGKAVI+ L L KGP+VG VM+AQIEWQLQHP+   E LT+HL+ L+A
Sbjct:    6 PTATELP-IITLTEVESHLFGLLNEAAAQVGQGTVLRVAGGWVRDKLLGKESDDVDIALDNVSGAAFAELLNKCLQDKGLETRSIGVIQANPEQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPEISFGTAVEDASRRDFTINSLFYNLQTESVEDWTGQGLADLLGPAGAIRTPLPALTTFLDDPLRLLRAIRFSSRFALPLDANIVAAAENEELQHALFGKVSRERVGLEVEGMLSGKDARPAVALEMLVNLGLSDVVFWMPEEVKTRVLPVGGMEGWAQRGLANVRMANALLMEREKPGIWRDIAEGGTEGSMQGAQGSIQGFMQVVRVTSAYMQPRREHRLCFLAAMLAPWEKHCMTEDRKPV--------EKKIGVVQWFVREALKHRAKDAEDLTALFGALDRCQSLTETMGAWSGRATGQEGRKVQKMRPGDA----CGTRDVERRRSEEQDNRWRAARLEAGRLLRDLKGLWRTGLDVACARECASLKGGENPTTESPSKRACDISVTLKAL----YEVQNRYQHTIDAVQGMGLDGIWNLRPLLDGKAVISNLGLPKGPLVGAVMDAQIEWQLQHPRGNAEELTKHLQTLVA 592
The following BLAST results are available for this feature:
BLAST of NO03G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29577.11.500e-17458.94trna nucleotidyltransferase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01330NO03G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01330.1NO03G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01330.1.cds1NO03G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01330.1 ID=NO03G01330.1|Name=NO03G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp
ATAGCCCACGAACAGCAAGGAAAATGTCGCGGTCATCATGAGTAGCAGCA
GGACCACCGCTCCCACGATCAGCACCAGCAGCAGTATCGACCCTCCTCCC
GTCATATCGCCCTCGGCCGCCAAACGTCCTCGCACTATGATCACTCCACC
CACCGTAACCGTCGTCCCACCCACCATCCCCCTCACGGCTGTCGAGGCCC
ACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAGAAGCTAAAGGCACC
GTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAGCTGCTGGGCAAGGA
AAGCGATGATGTGGACGTGGCCCTCGACAACATGTCGGGCGCATCCTTTG
CCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGATTTGAGACGCGGTCT
ATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAGCACTTGGAGACCGC
CCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCACCAACCTCCGCACCG
AGACTTATCGTGCCGATAGCCGCATCCCCGACATGGCTTTTGGGTCTGCG
CACGACGATGCACACCGAAGGGATTTCACGATTAATGCTTTGTTTTACAA
TCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAAGGGCTTGAGTGATT
TGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGCCAGCATTGACCACG
TTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTTAGATTCGCGGCTCG
ATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGCGGCGAAGGACGGGG
ATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAGAACGAGTCGGGATT
GAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGACCGGCATTGGCTTT
TGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGATGTTTCGGTTGCCTG
AGGAGATGAAGGTGCAGCTGAGACCGGAGAGAGGGAGGGATGGATGGGCG
GAGGAAGGGTTGGGAACAGTGAGGATGGTGAATTTGTTGTTGATGTATCG
GGAGGATGATGGACTTTTGAAAGGAGATGATAAGAAAGAGGACGAATTTG
CAACGACGATGACAAAGGTATTGCAGGGATTAAGAGAGTCAGAGGCCTAC
AAACGACCTCGGCGGGAGCATCGATTGCTTTTTTTAAGTGCCATGCTGAG
AGCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAAGATTGTGAAGAAGG
GCAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCGTTCAGTGGTTCATT
CGGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAGGACATGACCCTGCT
TTTGGGGACGCTTGATAGGTTGCAGGCCTTGAGTCGCAGCATGGCAACAA
CGACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGATGGCG
GTTCAGGAGGCAGATAATCCAGGAATAGGAGGAGGAGGAGTAAAAGGCGG
CGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCGGGTATGGTACTGC
GAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTTGGCATGTGCGCGG
GAACTCGCAATTACGTTTGAAGAGAAATTAGAAATATCAGCAGCAGTTAC
AACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTTTTGACTCGGTATC
GACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGACCAGATCTGGAAA
CTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCCTTCTTCGCTTACA
AAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAGATTGAGTGGCAGC
TTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGAGCACTTGAAAGGA
CTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAGAGCGGGAAGGGTA
AGGGTTCGGCTGGAAGATTGTGCAAAAGAAATAATGAAATGTACCATAAG
AA
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protein sequence of NO03G01330.1

>NO03G01330.1-protein ID=NO03G01330.1-protein|Name=NO03G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MSSSRTTAPTISTSSSIDPPPVISPSAAKRPRTMITPPTVTVVPPTIPLT
AVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMS
GASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFT
NLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGK
GLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKA
AKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVM
FRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKK
EDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKK
IVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSR
SMATTTTTAAAAAAAAAATMAVQEADNPGIGGGGVKGGENSNEQRVRLEA
GMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEV
LTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQKGPMVGQVMEAQ
IEWQLQHPKEGVEALTEHLKGLMAAGTFSAAEGEREG*
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mRNA from alignment at chr3:416333..418334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01330.1 ID=NO03G01330.1|Name=NO03G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp|location=Sequence derived from alignment at chr3:416333..418334- (Nannochloropsis oceanica)
ATAGCCCACGAACAGCAAGGAAAATGTCGCGGTCATCATGAGTAGCAGCA
GGACCACCGCTCCCACGATCAGCACCAGCAGCAGTATCGACCCTCCTCCC
GTCATATCGCCCTCGGCCGCCAAACGTCCTCGCACTATGATCACTCCACC
CACCGTAACCGTCGTCCCACCCACCATCCCCCTCACGGCTGTCGAGGCCC
ACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAGAAGCTAAAGGCACC
GTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAGCTGCTGGGCAAGGA
AAGCGATGATGTGGACGTGGCCCTCGACAACATGTCGGGCGCATCCTTTG
CCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGATTTGAGACGCGGTCT
ATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAGCACTTGGAGACCGC
CCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCACCAACCTCCGCACCG
AGACTTATCGTGCCGATAGCCGCATCCCCGACATGGCTTTTGGGTCTGCG
CACGACGATGCACACCGAAGGGATTTCACGATTAATGCTTTGTTTTACAA
TCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAAGGGCTTGAGTGATT
TGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGCCAGCATTGACCACG
TTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTTAGATTCGCGGCTCG
ATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGCGGCGAAGGACGGGG
ATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAGAACGAGTCGGGATT
GAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGACCGGCATTGGCTTT
TGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGATGTTTCGGTTGCCTG
AGGAGATGAAGGTGCAGCTGAGACCGGAGAGAGGGAGGGATGGATGGGCG
GAGGAAGGGTTGGGAACAGTGAGGATGGTGAATTTGTTGTTGATGTATCG
GGAGGATGATGGACTTTTGAAAGGAGATGATAAGAAAGAGGACGAATTTG
CAACGACGATGACAAAGGTATTGCAGGGATTAAGAGAGTCAGAGGCCTAC
AAACGACCTCGGCGGGAGCATCGATTGCTTTTTTTAAGTGCCATGCTGAG
AGCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAAGATTGTGAAGAAGG
GCAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCGTTCAGTGGTTCATT
CGGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAGGACATGACCCTGCT
TTTGGGGACGCTTGATAGGTTGCAGGCCTTGAGTCGCAGCATGGCAACAA
CGACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGATGGCG
GTTCAGGAGGCAGATAATCCAGGAATAGGAGGAGGAGGAGTAAAAGGCGG
CGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCGGGTATGGTACTGC
GAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTTGGCATGTGCGCGG
GAACTCGCAATTACGTTTGAAGAGAAATTAGAAATATCAGCAGCAGTTAC
AACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTTTTGACTCGGTATC
GACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGACCAGATCTGGAAA
CTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCCTTCTTCGCTTACA
AAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAGATTGAGTGGCAGC
TTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGAGCACTTGAAAGGA
CTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAGAGCGGGAAGGGTA
AGGGTTCGGCTGGAAGATTGTGCAAAAGAAATAATGAAATGTACCATAAG
AA
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Coding sequence (CDS) from alignment at chr3:416333..418334-

>NO03G01330.1 ID=NO03G01330.1|Name=NO03G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr3:416333..418334- (Nannochloropsis oceanica)
ATGAGTAGCAGCAGGACCACCGCTCCCACGATCAGCACCAGCAGCAGTAT
CGACCCTCCTCCCGTCATATCGCCCTCGGCCGCCAAACGTCCTCGCACTA
TGATCACTCCACCCACCGTAACCGTCGTCCCACCCACCATCCCCCTCACG
GCTGTCGAGGCCCACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAGA
AGCTAAAGGCACCGTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAGC
TGCTGGGCAAGGAAAGCGATGATGTGGACGTGGCCCTCGACAACATGTCG
GGCGCATCCTTTGCCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGATT
TGAGACGCGGTCTATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAGC
ACTTGGAGACCGCCCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCACC
AACCTCCGCACCGAGACTTATCGTGCCGATAGCCGCATCCCCGACATGGC
TTTTGGGTCTGCGCACGACGATGCACACCGAAGGGATTTCACGATTAATG
CTTTGTTTTACAATCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAAG
GGCTTGAGTGATTTGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGCC
AGCATTGACCACGTTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTTA
GATTCGCGGCTCGATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGCG
GCGAAGGACGGGGATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAGA
ACGAGTCGGGATTGAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGAC
CGGCATTGGCTTTTGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGATG
TTTCGGTTGCCTGAGGAGATGAAGGTGCAGCTGAGACCGGAGAGAGGGAG
GGATGGATGGGCGGAGGAAGGGTTGGGAACAGTGAGGATGGTGAATTTGT
TGTTGATGTATCGGGAGGATGATGGACTTTTGAAAGGAGATGATAAGAAA
GAGGACGAATTTGCAACGACGATGACAAAGGTATTGCAGGGATTAAGAGA
GTCAGAGGCCTACAAACGACCTCGGCGGGAGCATCGATTGCTTTTTTTAA
GTGCCATGCTGAGAGCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAAG
ATTGTGAAGAAGGGCAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCGT
TCAGTGGTTCATTCGGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAGG
ACATGACCCTGCTTTTGGGGACGCTTGATAGGTTGCAGGCCTTGAGTCGC
AGCATGGCAACAACGACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGACGATGGCGGTTCAGGAGGCAGATAATCCAGGAATAGGAGGAGGAG
GAGTAAAAGGCGGCGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCG
GGTATGGTACTGCGAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTT
GGCATGTGCGCGGGAACTCGCAATTACGTTTGAAGAGAAATTAGAAATAT
CAGCAGCAGTTACAACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTT
TTGACTCGGTATCGACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGA
CCAGATCTGGAAACTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCC
TTCTTCGCTTACAAAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAG
ATTGAGTGGCAGCTTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGA
GCACTTGAAAGGACTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAG
AGCGGGAAGGGTAA
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Synonyms
Publications