NO03G01040.1, NO03G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01040.1
Unique NameNO03G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr3:328096..329276 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:328096..329276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01040.1 vs.
Match: EWM29516.1 (3-hydroxybutyryl- dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 460.3 bits (1183), Expect = 5.000e-126
Identity = 236/298 (79.19%), Postives = 259/298 (86.91%), Query Frame = 0 
Query:   30 RCRPRYMTMLSTSSTGGANTSKPHGPGHQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKGR 328
            + RPR+M    TS      T KPHGP HQRGE LEEPPRNLKD+EFSLK+GVATI LDRPHRLNALSE+M ESLMRLCEY+T AP +KVR C+VTGG+RAFSTGRDLK SKLHTTL +RERYMKLALDSV+AV RLPLPTIA LSGPAFGWGLELALACDLRV+ P+SLLCLPETSLGIFPGAGGVVLLRE+VSPS+AKDLIFTARRFSG +A +LGVVN VS  V++ A ELA+ IA NGPLGVRGAKEVMEGAHNV F  A+ LA QLRAPLSET+DFKEALQAFEEKRKP F+GR
Sbjct:   22 KLRPRFMATTPTSF----KTGKPHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR 315
The following BLAST results are available for this feature:
BLAST of NO03G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29516.15.000e-12679.193-hydroxybutyryl- dehydratase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01040NO03G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01040.1NO03G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01040.1.cds1NO03G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01040.1.cds2NO03G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01040.1 ID=NO03G01040.1|Name=NO03G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
ATGCTGTCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCG
AGCTAGACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCC
GCTACATGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGC
AAACCCCACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCC
ACGCAATCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCA
TCACCTTGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGC
GAGAGCTTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAA
AGTCCGGGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGAC
GAGACTTGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGG
TACATGAAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGCCCCT
CCCCACCATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAAC
TCGCCCTCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGT
CTCCCCGAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACT
TCTACGTGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCG
CTCGGCGTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGC
GTTTCAACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGC
GAGGAACGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAG
CACATAACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGG
GCACCTTTATCGGAAACAGATGATTTCAAGGAGGCGTTACAGGCGTTTGA
GGAAAAACGAAAGCCAGTGTTCAAGGGGCGATAG
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protein sequence of NO03G01040.1

>NO03G01040.1-protein ID=NO03G01040.1-protein|Name=NO03G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MLSTVVTTATATALLCRARPTMCASFYFLRCRPRYMTMLSTSSTGGANTS
KPHGPGHQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMG
ESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRER
YMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLC
LPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNS
VSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLR
APLSETDDFKEALQAFEEKRKPVFKGR*
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mRNA from alignment at chr3:328096..329276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01040.1 ID=NO03G01040.1|Name=NO03G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp|location=Sequence derived from alignment at chr3:328096..329276- (Nannochloropsis oceanica)
ATGCTGTCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCG
AGCTAGACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCC
GCTACATGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGC
AAACCCCACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCC
ACGCAATCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCA
TCACCTTGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGC
GAGAGCTTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAA
AGTCCGGGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGAC
GAGACTTGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGG
TACATGAAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGGTAAG
GAAACGAAAGACGGGGCCCGGCTTATGGGTGTTTATGTCCTCCCTTTCCC
AGATTAACCATCGATCCTCTTTTCATCCCTCCTCTGTGATGTTCTAGCAA
AGCGAAACCTTGTAGTCCCAATCCCTCACTGCAATTTATAACATCACCCA
ACTTTTCCCTCTCTCAATCTCGCCGTCTCTCCTTCGAAATAGCCCCTCCC
CACCATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAACTCG
CCCTCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGTCTC
CCCGAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACTTCT
ACGTGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCGCTC
GGCGTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGCGTT
TCAACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGCGAG
GAACGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAGCAC
ATAACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGGGCA
CCTTTATCGGAAACAGATGATTTCAAGGAGGCGTTACAGGCGTTTGAGGA
AAAACGAAAGCCAGTGTTCAAGGGGCGATAG
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Coding sequence (CDS) from alignment at chr3:328096..329276-

>NO03G01040.1 ID=NO03G01040.1|Name=NO03G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr3:328096..329276- (Nannochloropsis oceanica)
ATGCTGTCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCG
AGCTAGACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCC
GCTACATGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGC
AAACCCCACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCC
ACGCAATCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCA
TCACCTTGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGC
GAGAGCTTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAA
AGTCCGGGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGAC
GAGACTTGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGG
TACATGAAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGCCCCT
CCCCACCATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAAC
TCGCCCTCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGT
CTCCCCGAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACT
TCTACGTGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCG
CTCGGCGTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGC
GTTTCAACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGC
GAGGAACGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAG
CACATAACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGG
GCACCTTTATCGGAAACAGATGATTTCAAGGAGGCGTTACAGGCGTTTGA
GGAAAAACGAAAGCCAGTGTTCAAGGGGCGATAG
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Synonyms
Publications