NO03G01020.1, NO03G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01020.1
Unique NameNO03G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2219
Alignment locationchr3:325095..327836 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:325095..327836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01020.1 vs.
Match: EWM29561.1 (glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 1.400e-46
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREMLLALGALK 118
            MGNLLGG    AT  AMDFVK TL+AHKVVVFSKTYCPFAS AK+TLQSEGAVFHVVELDQR+DGG+IQAALA+MTGRRTVPNVFL+ KSIGGGDDTVALAR+G+++EML ALGALK
Sbjct:   91 MGNLLGGTAVAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALK 207
The following BLAST results are available for this feature:
BLAST of NO03G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29561.11.400e-4682.91glutaredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01020NO03G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01020.1NO03G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01020.1.cds1NO03G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01020.1.cds2NO03G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01020.1 ID=NO03G01020.1|Name=NO03G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp
CGGTGAGTACATCGTGATATGGTTTTTCAAGTATGGTCACTACTTTTTTT
CAACATGTCGATACGCCTTACTTTATTCACCTTGGCTGGAGGGAGGGATG
GCCTGGGCACAATCTTAATCTCAATCTTAATCTCGATCTTAATCTGAATC
CTAATCCTAATCTTAATCTTAATCTCATACCCAAATTCCACATTTTATGT
TACAGTCGACTCTGAAGCAATTGCCCTATCGCAAAGGCCACATCTCCCTC
TGCGATCCTATCGTCAAATGCCCGAAATTCTGCTTTGATTACATCATCTA
CCTCCTTCAACCGTTGACTCTTCATCAGCTTTTTGAACGCCACGATGCTT
TTCTGTACCAACGGTTTTGCCAGCATCTCCTCCAACCTGGACAACACCTC
TGGCATGAGTCTCTCACTCGCAATAACCTCACTGATCAAGTGCGCGCTCT
CCGCCTCGCGTGCCGTGAATTTCTTTCCTAGAAACAAGAGCTCACTTGCT
TTGCTCCTCCCCATCGTCAAGGGAAAGAGGGCGGATGACGCGTACTCAGG
TACGATAGCCATTCTTAAAAAGGGAGTCCAGAAGGTGGCGTGTGGGGCAG
CGTAAGCAAGGTCCACGTGACAGAGAAGGGTCACGGCGATGCCGATGGCG
GGGCCATTGACGGCCGCGACGACAAGCTTGGGGAATGCGGAGAGGGCCTG
AAGATATGGAGGAAGGGAGGGCGATTAGAAAAAGGGAGGAGGGGTGAGGA
GTGAGGAGCAGCGGGATTCATTTGACGGAGACAAGATCACACACGTACCT
TCATGAAAATTGCCGCTGGTGACGCTTCCATTTTATGGTCTGAATCTGGG
CTCCATGAATCGTCTGTTAGATCCGCCCCCGAGGAGAAATAATCTCCCTT
GCCCGTGAGCACGAGGCAAGTGACTGTCTCGTCGACGGCGGCCCTGTTCA
TGGCTTCAGCTAGGTCCAAGTACATGGCACCAGTGATGGCGTTCTTTTTC
CGGTGCCGGTCAAGGAGGAGGATGAGGATGCCGGGGAAGGGGCGTTCTTC
ATGGAAATATTTGTCTAGGTATGTGGGTGGATGGTTGAGTGGAGCTGGCG
GTTATGGGTTGGGAATGGAAGGAGAATAGTGCGATCTGTCGTGGCATGCA
CTCTTTGGGGAATGCAAAGACCCCTTACGAACGTCCATAAATTTGGAAGG
GCAAGATGCGCAGGCATTACAGGTTTACGCTTACAGCGGATGTAGCACAT
CAGGGAGAGGAGTGAAGGACAGGGAAAGGGGTGGAAGGATAGGAAAGAAG
AGCATTCTTACCCTTGTTGTTCCCGTCCCGGTGAACGACGTAATCCGCCA
TAGCGCCGAGCTGGTCCTTTCCAGTGCTGGCAAGCACGTCCTTTCTTATG
TTGTACTTGTGTGTGTGTGATGTGGAAGTGAGAACAATCCAGGAATGCAG
GCCCAGTCGTAGTTCAATTGCTGCCGCCTCGCTCGCCATCGTCATCCGAT
GGGCAACGGTGAAACACGCTCTTCTTCTTTCTCCTTCGGGACCACCTCAC
TCCTTTTAATATACCTGCAAACGAAAAAACTCACAGTTTTGGCAAGCCAC
TGAATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAGC
CATGGATTTCGTCAAGAAAACTCTCCAAGCCCACAAAGTGGTCGTCTTTT
CGAAAACCTACTGCCCCTTTGCCTCCAGGGCCAAGCAAACCCTGCAATCA
GAAGGCGCCGTCTTCCACGTCGTAGAGCTGGACCAACGTAACGATGGAGG
GGAGATTCAGGCGGCCCTTGCGGACATGACCGGCCGGCGAACGGTCCCAA
ACGTATTCTTGGACAGCAAGAGTATCGGAGGGGGGGATGACACGGTGGCT
TTGGCGCGGTCTGGGAGGTTAAGGGAAATGCTCTTGGCGTTGGGGGCGCT
GAAGTAAGTAAGTGAGAGGATCGATGCGGCGAAGCTATAGCAAGGGAGGA
ATACAAAATCATCAAGAAAACATTCAAAGTATGGGAGAGAGGGGGGGGGA
GGGAGAGGAAGACCAAGGGGAAAAAGCTGAAAGAAACCTTTAAAAGAATT
TCCTGATCGGGAAGTCTAAGGTATACCGTGGATTGGAAAACGCGTAGTTA
ACACAATACCAAACTCAAAACGGCGGAGAAACAGCAGCATAAGTAATAAA
AGTCCTTGCCCAAACGCGT
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protein sequence of NO03G01020.1

>NO03G01020.1-protein ID=NO03G01020.1-protein|Name=NO03G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSE
GAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVAL
ARSGRLREMLLALGALK*
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mRNA from alignment at chr3:325095..327836+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01020.1 ID=NO03G01020.1|Name=NO03G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2742bp|location=Sequence derived from alignment at chr3:325095..327836+ (Nannochloropsis oceanica)
CGGTGAGTACATCGTGATATGGTTTTTCAAGTATGGTCACTACTTTTTTT
CAACATGTCGATACGCCTTACTTTATTCACCTTGGCTGGAGGGAGGGATG
GCCTGGGCACAATCTTAATCTCAATCTTAATCTCGATCTTAATCTGAATC
CTAATCCTAATCTTAATCTTAATCTCATACCCAAATTCCACATTTTATGT
TACAGTCGACTCTGAAGCAATTGCCCTATCGCAAAGGCCACATCTCCCTC
TGCGATCCTATCGTCAAATGCCCGAAATTCTGCTTTGATTACATCATCTA
CCTCCTTCAACCGTTGACTCTTCATCAGCTTTTTGAACGCCACGATGCTT
TTCTGTACCAACGGTTTTGCCAGCATCTCCTCCAACCTGGACAACACCTC
TGGCATGAGTCTCTCACTCGCAATAACCTCACTGATCAAGTGCGCGCTCT
CCGCCTCGCGTGCCGTGAATTTCTTTCCTAGAAACAAGAGCTCACTTGCT
TTGCTCCTCCCCATCGTCAAGGGAAAGAGGGCGGATGACGCGTACTCAGG
TACGATAGCCATTCTTAAAAAGGGAGTCCAGAAGGTGGCGTGTGGGGCAG
CGTAAGCAAGGTCCACGTGACAGAGAAGGGTCACGGCGATGCCGATGGCG
GGGCCATTGACGGCCGCGACGACAAGCTTGGGGAATGCGGAGAGGGCCTG
AAGATATGGAGGAAGGGAGGGCGATTAGAAAAAGGGAGGAGGGGTGAGGA
GTGAGGAGCAGCGGGATTCATTTGACGGAGACAAGATCACACACGTACCT
TCATGAAAATTGCCGCTGGTGACGCTTCCATTTTATGGTCTGAATCTGGG
CTCCATGAATCGTCTGTTAGATCCGCCCCCGAGGAGAAATAATCTCCCTT
GCCCGTGAGCACGAGGCAAGTGACTGTCTCGTCGACGGCGGCCCTGTTCA
TGGCTTCAGCTAGGTCCAAGTACATGGCACCAGTGATGGCGTTCTTTTTC
CGGTGCCGGTCAAGGAGGAGGATGAGGATGCCGGGGAAGGGGCGTTCTTC
ATGGAAATATTTGTCTAGGTATGTGGGTGGATGGTTGAGTGGAGCTGGCG
GTTATGGGTTGGGAATGGAAGGAGAATAGTGCGATCTGTCGTGGCATGCA
CTCTTTGGGGAATGCAAAGACCCCTTACGAACGTCCATAAATTTGGAAGG
GCAAGATGCGCAGGCATTACAGGTTTACGCTTACAGCGGATGTAGCACAT
CAGGGAGAGGAGTGAAGGACAGGGAAAGGGGTGGAAGGATAGGAAAGAAG
AGCATTCTTACCCTTGTTGTTCCCGTCCCGGTGAACGACGTAATCCGCCA
TAGCGCCGAGCTGGTCCTTTCCAGTGCTGGCAAGCACGTCCTTTCTTATG
TTGTACTTGTGTGTGTGTGATGTGGAAGTGAGAACAATCCAGGAATGCAG
GCCCAGTCGTAGTTCAATTGCTGCCGCCTCGCTCGCCATCGTCATCCGAT
GGGCAACGGTGAAACACGCTCTTCTTCTTTCTCCTTCGGGACCACCTCAC
TCCTTTTAATATACCTGCAAACGAAAAAACTCACAGTTTTGGCAAGCCAC
TGAATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAGC
CATGGATTTCGTCAAGAAAACTCTCCAAGGTGCGTGTCCTCATGATGGTG
ACCAGGGGGGAGGGAGAAGAAGGGTGGGGGCGAGAAAGGAAAGATCGATG
GGACACCATTATAGACTCGCATCGAAGATGGGCGCTGTCGCTGCACGACA
TATGCCTAAAGTGATACCGCTGCCGGGTCGACCAGGACGCTTACGACAAG
CGGGATTGGTGGATGAAATAAGTGGAGGGTCTGCCCGGATCATACACCAC
GTCGCCCCTCCCTGTCTCATGCGTACATGCGCCGTAAGGCTGGGCCTACA
CTCCAGTTCATTTAAAATTGACAGATGCAACGTTGCGAATGCAAGCGAGT
TATCGGTCGCCGTGAATGCTCGCCCACCTTTTTTTCCTCCCAACCTCGTC
CCTACCAAACAGCCCACAAAGTGGTCGTCTTTTCGAAAACCTACTGCCCC
TTTGCCTCCAGGGCCAAGCAAACCCTGCAATCAGAAGGCGCCGTCTTCCA
CGTCGTAGAGCTGGACCAACGTAACGATGGAGGGGAGATTCAGGCGGCCC
TTGCGGACATGACCGGCCGGCGAACGGTCCCAAACGTATTCTTGGACAGC
AAGAGTATCGGAGGGGGGGATGACACGGTGGCTTTGGCGCGGTCTGGGAG
GTTAAGGGAAATGCTCTTGGCGTTGGGGGCGCTGAAGTAAGTAAGTGAGA
GGTACGTGGTGAGGCTTTCCTTGCTTTCGCGAGGGGTTGGGGTGCAGGTG
TCAGCGGGCATGCCAGGGGGTGTGAACATGCCGCAGACATTTCCTCTTGA
CTGTGAAAATACCCCGGTTTCTTTCCCTCGTTCATCCACAGGATCGATGC
GGCGAAGCTATAGCAAGGGAGGAATACAAAATCATCAAGAAAACATTCAA
AGTATGGGAGAGAGGGGGGGGGAGGGAGAGGAAGACCAAGGGGAAAAAGC
TGAAAGAAACCTTTAAAAGAATTTCCTGATCGGGAAGTCTAAGGTATACC
GTGGATTGGAAAACGCGTAGTTAACACAATACCAAACTCAAAACGGCGGA
GAAACAGCAGCATAAGTAATAAAAGTCCTTGCCCAAACGCGT
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Coding sequence (CDS) from alignment at chr3:325095..327836+

>NO03G01020.1 ID=NO03G01020.1|Name=NO03G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr3:325095..327836+ (Nannochloropsis oceanica)
ATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAGCCAT
GGATTTCGTCAAGAAAACTCTCCAAGCCCACAAAGTGGTCGTCTTTTCGA
AAACCTACTGCCCCTTTGCCTCCAGGGCCAAGCAAACCCTGCAATCAGAA
GGCGCCGTCTTCCACGTCGTAGAGCTGGACCAACGTAACGATGGAGGGGA
GATTCAGGCGGCCCTTGCGGACATGACCGGCCGGCGAACGGTCCCAAACG
TATTCTTGGACAGCAAGAGTATCGGAGGGGGGGATGACACGGTGGCTTTG
GCGCGGTCTGGGAGGTTAAGGGAAATGCTCTTGGCGTTGGGGGCGCTGAA
GTAA
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Synonyms
Publications