NO03G01010.2, NO03G01010.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01010.2
Unique NameNO03G01010.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1505
Alignment locationchr3:325095..326700 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:325095..326700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01010.2 vs.
Match: EWM29558.1 (peroxisomal -trans-enoyl- isomerase [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 2.400e-103
Identity = 199/224 (88.84%), Postives = 216/224 (96.43%), Query Frame = 0 
Query:    1 MYLDLAEAMNRAAVDETVTCLVLTGKGDYFSSGADLTDDSWSPDSDHKMEASPAAIFMKALSAFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTAREAESAHLISEVIASERLMPEVLSRLEEMLAKPLVQKSIVAFKKLMKSQRLKEVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL 225
            MYLDLA+AM+RAA+DE+VTCLVLTGKGDYFSSGADLTD+SW+PD +HKME SPAAIFMKALS FPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTA EA+++HLISE+I ++RL+ EVL RLE+MLAKPLVQKS+VAFK LMKSQRL+EVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL
Sbjct:   89 MYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL 312
The following BLAST results are available for this feature:
BLAST of NO03G01010.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29558.12.400e-10388.84peroxisomal -trans-enoyl- isomerase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01010NO03G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01010.2NO03G01010.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01010.2.cds1NO03G01010.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01010.2.cds2NO03G01010.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01010.2 ID=NO03G01010.2|Name=NO03G01010.2|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
CATTCAGTGGCTTGCCAAAACTGTGAGTTTTTTCGTTTGCAGGTATATTA
AAAGGAGTGAGGTGGTCCCGAAGGAGAAAGAAGAAGAGCGTGTTTCACCG
TTGCCCATCGGATGACGATGGCGAGCGAGGCGGCAGCAATTGAACTACGA
CTGGGCCTGCATTCCTGGATTGTTCTCACTTCCACATCACACACACACAA
GTACAACATAAGAAAGGACGTGCTTGCCAGCACTGGAAAGGACCAGCTCG
GCGCTATGGCGGATTACGTCGTTCACCGGGACGGGAACAACAAGGGTAAG
AATGCTCTTCTTTCCTATCCTTCCACCCCTTTCCCTGTCCTTCACTCCTC
TCCCTGATGTGCTACATCCGCTGTAAGCGTAAACCTGTAATGCCTGCGCA
TCTTGCCCTTCCAAATTTATGGACGTTCGTAAGGGGTCTTTGCATTCCCC
AAAGAGTGCATGCCACGACAGATCGCACTATTCTCCTTCCATTCCCAACC
CATAACCGCCAGCTCCACTCAACCATCCACCCACATACCTAGACAAATAT
TTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCCTCCTTGACCG
GCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTGGACCTAGCTG
AAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTGCCTCGTGCTC
ACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAACAGACGATTC
ATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCAGCGGCAATTT
TCATGAAGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCAAT
GGCCCCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTTGC
TTACGCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGCTA
TCGTACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGAGG
AGCAAAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGCGA
GGCGGAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACTCA
TGCCAGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGGTA
CAGAAAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTGAA
GGAGGTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAGGA
TCGCAGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTCGA
CTGTAACATAAAATGTGGAATTTGGGTATGAGATTAAGATTAAGATTAGG
ATTAGGATTCAGATTAAGATCGAGATTAAGATTGAGATTAAGATTGTGCC
CAGGCCATCCCTCCCTCCAGCCAAGGTGAATAAAGTAAGGCGTATCGACA
TGTTGAAAAAAAGTAGTGACCATACTTGAAAAACCATATCACGATGTACT
CACCG
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protein sequence of NO03G01010.2

>NO03G01010.2-protein ID=NO03G01010.2-protein|Name=NO03G01010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MYLDLAEAMNRAAVDETVTCLVLTGKGDYFSSGADLTDDSWSPDSDHKME
ASPAAIFMKALSAFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWT
PFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTAREAESAHLISEV
IASERLMPEVLSRLEEMLAKPLVQKSIVAFKKLMKSQRLKEVDDVIKAEF
RAFDDRIAEGDVAFAIGQLLQSRL*
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mRNA from alignment at chr3:325095..326700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01010.2 ID=NO03G01010.2|Name=NO03G01010.2|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at chr3:325095..326700- (Nannochloropsis oceanica)
CATTCAGTGGCTTGCCAAAACTGTGAGTTTTTTCGTTTGCAGGTATATTA
AAAGGAGTGAGGTGGTCCCGAAGGAGAAAGAAGAAGAGCGTGTTTCACCG
TTGCCCATCGGATGACGATGGCGAGCGAGGCGGCAGCAATTGAACTACGA
CTGGGCCTGCATTCCTGGATTGTTCTCACTTCCACATCACACACACACAA
GTACAACATAAGAAAGGACGTGCTTGCCAGCACTGGAAAGGACCAGCTCG
GCGCTATGGCGGATTACGTCGTTCACCGGGACGGGAACAACAAGGGTAAG
AATGCTCTTCTTTCCTATCCTTCCACCCCTTTCCCTGTCCTTCACTCCTC
TCCCTGATGTGCTACATCCGCTGTAAGCGTAAACCTGTAATGCCTGCGCA
TCTTGCCCTTCCAAATTTATGGACGTTCGTAAGGGGTCTTTGCATTCCCC
AAAGAGTGCATGCCACGACAGATCGCACTATTCTCCTTCCATTCCCAACC
CATAACCGCCAGCTCCACTCAACCATCCACCCACATACCTAGACAAATAT
TTCCATGAAGAACGCCCCTTCCCCGGCATCCTCATCCTCCTCCTTGACCG
GCACCGGAAAAAGAACGCCATCACTGGTGCCATGTACTTGGACCTAGCTG
AAGCCATGAACAGGGCCGCCGTCGACGAGACAGTCACTTGCCTCGTGCTC
ACGGGCAAGGGAGATTATTTCTCCTCGGGGGCGGATCTAACAGACGATTC
ATGGAGCCCAGATTCAGACCATAAAATGGAAGCGTCACCAGCGGCAATTT
TCATGAAGGTACGTGTGTGATCTTGTCTCCGTCAAATGAATCCCGCTGCT
CCTCACTCCTCACCCCTCCTCCCTTTTTCTAATCGCCCTCCCTTCCTCCA
TATCTTCAGGCCCTCTCCGCATTCCCCAAGCTTGTCGTCGCGGCCGTCAA
TGGCCCCGCCATCGGCATCGCCGTGACCCTTCTCTGTCACGTGGACCTTG
CTTACGCTGCCCCACACGCCACCTTCTGGACTCCCTTTTTAAGAATGGCT
ATCGTACCTGAGTACGCGTCATCCGCCCTCTTTCCCTTGACGATGGGGAG
GAGCAAAGCAAGTGAGCTCTTGTTTCTAGGAAAGAAATTCACGGCACGCG
AGGCGGAGAGCGCGCACTTGATCAGTGAGGTTATTGCGAGTGAGAGACTC
ATGCCAGAGGTGTTGTCCAGGTTGGAGGAGATGCTGGCAAAACCGTTGGT
ACAGAAAAGCATCGTGGCGTTCAAAAAGCTGATGAAGAGTCAACGGTTGA
AGGAGGTAGATGATGTAATCAAAGCAGAATTTCGGGCATTTGACGATAGG
ATCGCAGAGGGAGATGTGGCCTTTGCGATAGGGCAATTGCTTCAGAGTCG
ACTGTAACATAAAATGTGGAATTTGGGTATGAGATTAAGATTAAGATTAG
GATTAGGATTCAGATTAAGATCGAGATTAAGATTGAGATTAAGATTGTGC
CCAGGCCATCCCTCCCTCCAGCCAAGGTGAATAAAGTAAGGCGTATCGAC
ATGTTGAAAAAAAGTAGTGACCATACTTGAAAAACCATATCACGATGTAC
TCACCG
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Coding sequence (CDS) from alignment at chr3:325095..326700-

>NO03G01010.2 ID=NO03G01010.2|Name=NO03G01010.2|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr3:325095..326700- (Nannochloropsis oceanica)
ATGTACTTGGACCTAGCTGAAGCCATGAACAGGGCCGCCGTCGACGAGAC
AGTCACTTGCCTCGTGCTCACGGGCAAGGGAGATTATTTCTCCTCGGGGG
CGGATCTAACAGACGATTCATGGAGCCCAGATTCAGACCATAAAATGGAA
GCGTCACCAGCGGCAATTTTCATGAAGGCCCTCTCCGCATTCCCCAAGCT
TGTCGTCGCGGCCGTCAATGGCCCCGCCATCGGCATCGCCGTGACCCTTC
TCTGTCACGTGGACCTTGCTTACGCTGCCCCACACGCCACCTTCTGGACT
CCCTTTTTAAGAATGGCTATCGTACCTGAGTACGCGTCATCCGCCCTCTT
TCCCTTGACGATGGGGAGGAGCAAAGCAAGTGAGCTCTTGTTTCTAGGAA
AGAAATTCACGGCACGCGAGGCGGAGAGCGCGCACTTGATCAGTGAGGTT
ATTGCGAGTGAGAGACTCATGCCAGAGGTGTTGTCCAGGTTGGAGGAGAT
GCTGGCAAAACCGTTGGTACAGAAAAGCATCGTGGCGTTCAAAAAGCTGA
TGAAGAGTCAACGGTTGAAGGAGGTAGATGATGTAATCAAAGCAGAATTT
CGGGCATTTGACGATAGGATCGCAGAGGGAGATGTGGCCTTTGCGATAGG
GCAATTGCTTCAGAGTCGACTGTAA
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Synonyms
Publications