NO03G00990.1, NO03G00990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G00990.1
Unique Name	NO03G00990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1783
Alignment location	chr3:320854..323423 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:320854..323423 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G00990.1 vs.
Match: EWM29569.1 (hypothetical protein Naga_100006g31 [Nannochloropsis gaditana])

HSP 1 Score: 510.4 bits (1313), Expect = 5.800e-141
Identity = 269/411 (65.45%), Postives = 318/411 (77.37%), Query Frame = 0

Query:   44 AADVNPPPSSR----PHSYQN--WRRTRGAVAARRAAGLGGLGTMLLINTAKAFLAVPLSFGPPIAQPYHLSIRWRS----VATITHASSSSSSSAAAAAAAATDTATSP----PSSHPSSQSSNAINIDPSTYTKTAVRLPISVSPSSLGDFKTCPRLYRFRHLERVPEPASEVMVRGSMVHDALDELFAQPPEKRNKDVLHDLFRSVWLKKKDKYVKELFPTVESQRAFGLAGLKLLSNYFKVETPADEEPVMREFRMKVPFPDGPSVTGILDRVDADKESGEWIVVDYKTGKAPALKYSPAVNERIIADKFFQLKIYALLLEQVKDRVPTRLKLIYLDGPTVMSMKLQEGDLEEAREELLSLWKGIVDAWENDAFPAKPGKLCEWCSFKTICPAWNFAREEEEGEQRG 441
            AA + PP +S     PH Y    WRR R  + + R AGLGGL TM L NT +AFLA+P S  PP +QPY  SIR RS    + ++   +S+ SS+ A     AT + ++P    P+   ++    +  IDPS Y   +V LP +VSPSSLGDFKTCPRLYRFRHLE++PEP SEVMVRGSMVHDALDELF+QPPEKR+K+VLHD+FR+VWLK++DKY+ ELFP+ E QRAFG+AGLKLLSNY KVETPA++EP+MREFRM+VPFPDGPSVTGILDRVD +  SGEW+VVDYKTGKAPALKYS AVNERI+ DKFFQLK+YALLLEQVK R PTRLKLIYLDGPTVMSM+L+  DL E + ELL LW+ IV AW+ D+FPA PGKLCEWCSFK+ICPAWNF R EE GE  G
Sbjct:    6 AALITPPSASSGHILPHIYHPCPWRRVR--MLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYL-ELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLDGPTVMSMRLRREDLAETKTELLGLWERIVGAWKADSFPATPGKLCEWCSFKSICPAWNFTR-EEGGEVEG 412

The following BLAST results are available for this feature:

BLAST of NO03G00990.1 vs.

BLAST of NO03G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29569.1	5.800e-141	65.45	hypothetical protein Naga_100006g31 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G00990	NO03G00990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00990.1	NO03G00990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00990.1.cds1	NO03G00990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00990.1.cds2	NO03G00990.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00990.1.cds3	NO03G00990.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00990.1.cds4	NO03G00990.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:320854..323423-
coding sequence from alignment at chr3:320854..323423-

mRNA sequence

>NO03G00990.1 ID=NO03G00990.1|Name=NO03G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
GGGCGAAAGGGTAGCAGCAACCGTGCAAATTGCGAGGCCCACAGGAGCTT
GGCGGGACATCTAAATCTTCCAAGACAAGAATATGATGGTGCCCCCTTTG
TGTATTTGTGTGTGGTAGTCTCTCCGTGTGTGTTATGGTGTGACGGGCGG
CGCAAAGTGCTGCTCCTCACTCCACTCGCCAATGCCTCCATTTTTCCTTT
CCCTTCCCTCCCTCACAGTGTCCCTCCACACTACAAAAGAATGGACATCG
CATACGAAAGGTGGAGGACCATTGTCCTATTTACCATGTTTCGGCGCTTT
CTAACCCTGTGGCTCTTGTCCTTTCCTTTATTCACAGGGGAAAACATTCG
GCCGACCTCCCCACCCCTTGTCAACTTCTATATATATATTTTTTTTCCTT
CCCCCCATCCTGACTCCTACCGCGGTTGTCATGACACAATTATCACCACC
GCATGGAGCAGTAGCAGTATCATCATCATTAACAGCAGCAGCAGCAGGAC
GACAAACATACCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGATGTCAATCCACCACCATCATCACGACCCCATTC
CTATCAGAATTGGCGCCGGACCCGGGGAGCAGTGGCGGCGCGGCGCGCGG
CAGGCTTGGGGGGTCTGGGGACAATGCTGCTAATTAACACTGCCAAGGCA
TTCTTGGCTGTACCCTTAAGTTTTGGCCCGCCCATTGCACAGCCTTACCA
CCTCTCCATCCGATGGAGAAGCGTGGCTACCATCACGCATGCTTCATCAT
CATCATCCTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAACCGACACGGCC
ACCTCCCCTCCCTCCTCCCATCCTTCCAGCCAGAGCAGCAACGCCATCAA
CATCGATCCTTCCACGTACACCAAAACCGCCGTTCGCCTCCCCATCTCCG
TCTCTCCCTCCTCCCTTGGCGACTTCAAGACCTGTCCCCGCCTTTATCGC
TTTCGTCACCTCGAACGAGTGCCGGAGCCCGCGTCAGAGGTCATGGTGAG
AGGCTCCATGGTCCACGACGCCCTTGATGAGCTGTTCGCCCAACCCCCGG
AGAAGAGGAACAAGGACGTGTTGCACGACCTCTTCCGCTCCGTCTGGTTG
AAGAAGAAGGACAAGTACGTGAAGGAATTGTTTCCGACGGTGGAGAGCCA
GCGGGCGTTCGGCTTGGCGGGGCTTAAGCTCCTATCGAACTACTTCAAGG
TGGAAACCCCCGCGGACGAAGAGCCCGTGATGCGTGAGTTTCGAATGAAG
GTACCCTTCCCCGATGGGCCGTCCGTGACGGGCATCCTTGACAGGGTCGA
CGCCGACAAGGAGAGTGGGGAGTGGATTGTGGTTGATTACAAAACAGGCA
AGGCTCCGGCACTCAAGTACTCTCCCGCCGTGAATGAACGCATCATCGCC
GACAAATTCTTCCAGCTCAAAATTTATGCCTTACTGCTGGAACAGGTCAA
GGACCGAGTGCCCACGCGCCTCAAGCTTATTTACTTGGACGGTCCCACTG
TCATGTCAATGAAACTCCAAGAAGGTGATTTGGAGGAAGCGAGGGAGGAG
CTGCTATCCCTGTGGAAAGGGATCGTGGACGCCTGGGAGAACGACGCCTT
TCCCGCCAAGCCAGGCAAGCTATGTGAATGGTGTTCGTTTAAAACGATTT
GTCCTGCTTGGAATTTCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGGGGA
GAGGAGGGAAGGAGGGAGGAGTGGCAGCTGTGA

protein sequence of NO03G00990.1

>NO03G00990.1-protein ID=NO03G00990.1-protein|Name=NO03G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MTQLSPPHGAVAVSSSLTAAAAGRQTYLAAAAAAAAAAAAAAAAADVNPP
PSSRPHSYQNWRRTRGAVAARRAAGLGGLGTMLLINTAKAFLAVPLSFGP
PIAQPYHLSIRWRSVATITHASSSSSSSAAAAAAAATDTATSPPSSHPSS
QSSNAINIDPSTYTKTAVRLPISVSPSSLGDFKTCPRLYRFRHLERVPEP
ASEVMVRGSMVHDALDELFAQPPEKRNKDVLHDLFRSVWLKKKDKYVKEL
FPTVESQRAFGLAGLKLLSNYFKVETPADEEPVMREFRMKVPFPDGPSVT
GILDRVDADKESGEWIVVDYKTGKAPALKYSPAVNERIIADKFFQLKIYA
LLLEQVKDRVPTRLKLIYLDGPTVMSMKLQEGDLEEAREELLSLWKGIVD
AWENDAFPAKPGKLCEWCSFKTICPAWNFAREEEEGEQRGEEGRREEWQL
*

mRNA from alignment at chr3:320854..323423-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G00990.1 ID=NO03G00990.1|Name=NO03G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp|location=Sequence derived from alignment at chr3:320854..323423- (Nannochloropsis oceanica)
GGGCGAAAGGGTAGCAGCAACCGTGCAAATTGCGAGGCCCACAGGAGCTT
GGCGGGACATCTAAATCTTCCAAGACAAGAATATGATGGTGCCCCCTTTG
TGTATTTGTGTGTGGTAGTCTCTCCGTGTGTGTTATGGTGTGACGGGCGG
CGCAAAGTGCTGCTCCTCACTCCACTCGCCAATGCCTCCATTTTTCCTTT
CCCTTCCCTCCCTCACAGTGTCCCTCCACACTACAAAAGAATGGACATCG
CATACGAAAGGTGGAGGACCATTGTCCTATTTACCATGTTTCGGCGCTTT
CTAACCCTGTGGCTCTTGTCCTTTCCTTTATTCACAGGGGAAAACATTCG
GCCGACCTCCCCACCCCTTGTCAACTTCTATATATATATTTTTTTTCCTT
CCCCCCATCCTGACTCCTACCGCGGTTGTCATGACACAATTATCACCACC
GCATGGAGCAGTAGCAGTATCATCATCATTAACAGCAGCAGCAGCAGGAC
GACAAACATACCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGATGTCAATCCACCACCATCATCACGACCCCATTC
CTATCAGAATTGGCGCCGGACCCGGGGAGCAGTGGCGGCGCGGCGCGCGG
CAGGCTTGGGGGGTCTGGGGACAATGCTGCTAATTAACACTGCCAAGGCA
TTCTTGGCTGTACCCTTAAGTTTTGGCCCGCCCATTGCACAGCCTTACCA
CCTCTCCATCCGATGGAGAAGCGTGGCTACCATCACGCATGCTTCATCAT
CATCATCCTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAACCGACACGGCC
ACCTCCCCTCCCTCCTCCCATCCTTCCAGCCAGAGCAGCAACGCCATCAA
CATCGATCCTTCCACGTACACCAAAACCGCCGTTCGCCTCCCCATCTCCG
TCTCTCCCTCCTCCCTTGGCGACTTCAAGACCTGTCCCCGCCTTTATCGC
TTTCGTCACCTCGAACGAGTGCCGGAGCCCGCGTCAGAGGTCATGGTGAG
AGGCTCCATGGTCCACGACGCCCTTGATGAGCTGTTCGCCCAACCCCCGG
AGAAGAGGAACAAGGACGTGTTGCACGACCTCTTCCGCTCCGTCTGGTTG
AAGAAGAAGGACAAGTACGTGAAGGAATTGTTTCCGACGGTGGAGAGCCA
GCGGGCGTTCGGCTTGGCGGGGCTTAAGCTCCTATCGAACTACTTCAAGG
TATGTGTCGAATGTGTTTCTTTGCTCTTATCTTGGCCTATCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCCCGTTTATTTTAGTGTGTGGACAATCCAA
TTCTGTCCGATGTTGCGTTGGCGGGTGAAATTTAAAAGCTGGGATCGAAC
TTTACTTTTTGATAAGGTACCAGTGCGCTTTGTCCAACCCATCATTCCTT
CTCCCCTCCCTCATTCCTTTCCTCCCTCCTCCTTCTTCGTTTCGGTCGGC
GTCGTAGCTTTTGACAGATTGACCTCTCCCTCACCATCCCCTCCCTCCGT
CCCTTCCTCCCGCCCCTAGGTGGAAACCCCCGCGGACGAAGAGCCCGTGA
TGCGTGAGTTTCGAATGAAGGTACCCTTCCCCGATGGGCCGTCCGTGACG
GGCATCCTTGACAGGGTCGACGCCGACAAGGAGAGTGGGGAGTGGATTGT
GGTTGATTACAAAACAGGTATGCGAGGGGCCGAAGGAGGGAAGCAGGAAG
GGAGGAAGGGCGGGAGGGAGGGAGGACGCGACTGAATCCAGCTTCGTGAG
AAATGCGATATGTACTCAGTAGTCCGACTTCTCACGTTTCTACTCATCCA
GTCCTCCCTCCCTCTCAACCCCCCTCCCTTCCACCCACCTTCAGGCAAGG
CTCCGGCACTCAAGTACTCTCCCGCCGTGAATGAACGCATCATCGCCGAC
AAATTCTTCCAGCTCAAAATTTATGCCTTACTGCTGGAACAGGTCAAGGA
CCGAGTGCCCACGCGCCTCAAGCTTATTTACTTGGGTATGACCCTCCTCC
TCCCTCCTTCCCTCCTTCGTGCCCTCCCTCCCTTCTTCCCTCTCTCCATT
TTGCGAGCTACCCGTCTGTATGGTGGCCATAGCTAGTCAAGAACAAGGCT
AATCCCTACCCTTCGCCTATCCGCCATAGTCAGACCCCTCCCCTCCCTCC
TTCGCGCCCTACCCACTTTCAACTCCGTCCCTTTCTTCGTCCCTCCTTCT
TTCCCGTGCCCACCATCCCTTCCCTCCCATTTCCCCCTTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTCAGACGGTCCCACTGTCATGTCAATGAA
ACTCCAAGAAGGTGATTTGGAGGAAGCGAGGGAGGAGCTGCTATCCCTGT
GGAAAGGGATCGTGGACGCCTGGGAGAACGACGCCTTTCCCGCCAAGCCA
GGCAAGCTATGTGAATGGTGTTCGTTTAAAACGATTTGTCCTGCTTGGAA
TTTCGCGAGGGAGGAGGAGGAGGGGGAGCAGAGGGGAGAGGAGGGAAGGA
GGGAGGAGTGGCAGCTGTGA

Coding sequence (CDS) from alignment at chr3:320854..323423-

>NO03G00990.1 ID=NO03G00990.1|Name=NO03G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr3:320854..323423- (Nannochloropsis oceanica)
ATGACACAATTATCACCACCGCATGGAGCAGTAGCAGTATCATCATCATT
AACAGCAGCAGCAGCAGGACGACAAACATACCTAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGTCAATCCACCA
CCATCATCACGACCCCATTCCTATCAGAATTGGCGCCGGACCCGGGGAGC
AGTGGCGGCGCGGCGCGCGGCAGGCTTGGGGGGTCTGGGGACAATGCTGC
TAATTAACACTGCCAAGGCATTCTTGGCTGTACCCTTAAGTTTTGGCCCG
CCCATTGCACAGCCTTACCACCTCTCCATCCGATGGAGAAGCGTGGCTAC
CATCACGCATGCTTCATCATCATCATCCTCCTCAGCAGCAGCAGCAGCAG
CAGCAGCAACCGACACGGCCACCTCCCCTCCCTCCTCCCATCCTTCCAGC
CAGAGCAGCAACGCCATCAACATCGATCCTTCCACGTACACCAAAACCGC
CGTTCGCCTCCCCATCTCCGTCTCTCCCTCCTCCCTTGGCGACTTCAAGA
CCTGTCCCCGCCTTTATCGCTTTCGTCACCTCGAACGAGTGCCGGAGCCC
GCGTCAGAGGTCATGGTGAGAGGCTCCATGGTCCACGACGCCCTTGATGA
GCTGTTCGCCCAACCCCCGGAGAAGAGGAACAAGGACGTGTTGCACGACC
TCTTCCGCTCCGTCTGGTTGAAGAAGAAGGACAAGTACGTGAAGGAATTG
TTTCCGACGGTGGAGAGCCAGCGGGCGTTCGGCTTGGCGGGGCTTAAGCT
CCTATCGAACTACTTCAAGGTGGAAACCCCCGCGGACGAAGAGCCCGTGA
TGCGTGAGTTTCGAATGAAGGTACCCTTCCCCGATGGGCCGTCCGTGACG
GGCATCCTTGACAGGGTCGACGCCGACAAGGAGAGTGGGGAGTGGATTGT
GGTTGATTACAAAACAGGCAAGGCTCCGGCACTCAAGTACTCTCCCGCCG
TGAATGAACGCATCATCGCCGACAAATTCTTCCAGCTCAAAATTTATGCC
TTACTGCTGGAACAGGTCAAGGACCGAGTGCCCACGCGCCTCAAGCTTAT
TTACTTGGACGGTCCCACTGTCATGTCAATGAAACTCCAAGAAGGTGATT
TGGAGGAAGCGAGGGAGGAGCTGCTATCCCTGTGGAAAGGGATCGTGGAC
GCCTGGGAGAACGACGCCTTTCCCGCCAAGCCAGGCAAGCTATGTGAATG
GTGTTCGTTTAAAACGATTTGTCCTGCTTGGAATTTCGCGAGGGAGGAGG
AGGAGGGGGAGCAGAGGGGAGAGGAGGGAAGGAGGGAGGAGTGGCAGCTG
TGA

Synonyms

Publications