NO03G00710.1, NO03G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00710.1
Unique NameNO03G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1216
Alignment locationchr3:228818..230033 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:228818..230033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00710.1 vs.
Match: OEJ87771.1 (Serine/threonine-protein kinase PKH1 [Hanseniaspora opuntiae])

HSP 1 Score: 77.4 bits (189), Expect = 9.400e-11
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 0 
Query:  155 QDLGQGSFGWVFKVGKKQQYCQEVAVKAAPLANTSWTEEAFFDTEGIVWAGVMEMMALKRALLHNVSAVVKILGVAVEEGYLLIALEFAPNGTMGRLVK---ACNERLVRQYGLQMLKIVEDLNASGIVHRDMKPENFLLDESWRAVAADFGLAHV-NKEEGQGAH 317
            Q++G GSF  V          ++ A+K           +++   +  V    +E MAL+R  L  +  VVK+     ++  L   LE+AP+G    ++K     +E   + Y  QM+  +ED++ +GI+HRD+KPEN LLD + R    DFG A +  K+E  G++
Sbjct:  211 QEIGDGSFSRVLLATSVHNPSEKFAIKVL--------SKSYLVKQNKVKYVNIEKMALQR--LSKLDTVVKMFFTFQDQSSLYFVLEYAPHGDFLSIMKEYGTLSEECTKYYSAQMIDAIEDIHKAGIIHRDIKPENILLDANRRIKLTDFGTAKILEKDEKTGSY 366
The following BLAST results are available for this feature:
BLAST of NO03G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEJ87771.19.400e-1130.72Serine/threonine-protein kinase PKH1 [Hanseniaspor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00710NO03G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00710.1NO03G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00710.1.cds1NO03G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00710.1 ID=NO03G00710.1|Name=NO03G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp
TACGTGCATATTTCCTGACAAAAATATCTTTTCGGTGTAGGCTATCTCAA
AGCACCTCTTTTTTTCCTCCTTGCTCGTTCGCCATTCCATCGCACTGTCT
TTCCACTTCCTTGCATGCACACAATGCTTTTATCACAGCTACTTCAAGCT
CTCATCCTGACACCCAATTATTGAGCTCCTATCAATTAAACATGCAAACA
TGAAAATAAACACACGGACGATGATGGGCAGGCTGTTGAAGGCATGTGAC
GAGCGCCTTATGAGGCAGTACCTCGTGGAAGGAGGGGGCTTTTTTCGTGA
CACCGATGCCCTAGAAGATGACGAAGGGCTCGAAGAAAAAGGTGATGACT
TAGAATTTGTAGAAGATGGGATGGTGGAGGAGGGGGAGTACAACTACTCT
GGATTCGACGAGCTAGCCGTTCGAATGGCGGTGCTTTCCCGTCAGACCTG
CCCAGAGGACTATGCCTGTCCCGTCGCTCACCCCTATCACCCTCTGAACA
TGAGTTTGTACGATCGCACCGCTGTGTTTGGCGTGGGGACAGCCCCGCAC
CTGTTTGGGAACAGCGTCATGCACCTGGACCGGGAGCGGCTGAGACGTGT
GTTGGACATCCACCGATACCGAAATATGGGCCGGGAGCCTTCGCAGACCT
TGCTGAGGGAGCAGGATTTGGGACAGGGGTCGTTTGGGTGGGTGTTCAAG
GTGGGGAAGAAGCAGCAATATTGCCAAGAGGTGGCTGTGAAGGCGGCACC
GCTCGCAAATACCTCGTGGACGGAGGAGGCTTTCTTTGATACGGAGGGCA
TCGTCTGGGCAGGGGTAATGGAGATGATGGCATTGAAACGCGCCCTTCTG
CACAACGTTTCGGCCGTTGTCAAGATTTTGGGCGTGGCGGTAGAGGAGGG
GTACCTTTTGATTGCGCTTGAATTTGCACCCAACGGGACGATGGGCAGGC
TAGTGAAGGCTTGTAACGAGCGCCTCGTGAGGCAGTACGGCCTTCAGATG
CTAAAAATCGTGGAAGATCTTAACGCAAGCGGAATCGTCCACAGGGACAT
GAAGCCTGAAAACTTTCTTTTGGACGAAAGTTGGCGAGCCGTAGCGGCTG
ATTTCGGCCTCGCGCACGTCAACAAGGAGGAAGGACAAGGCGCGCACGGA
GAGGTCGAGGGCACCAGAGCTGGACGGAAAGACTGTACACACGTACATAT
CCGACCTGGCTTGTAG
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protein sequence of NO03G00710.1

>NO03G00710.1-protein ID=NO03G00710.1-protein|Name=NO03G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MKINTRTMMGRLLKACDERLMRQYLVEGGGFFRDTDALEDDEGLEEKGDD
LEFVEDGMVEEGEYNYSGFDELAVRMAVLSRQTCPEDYACPVAHPYHPLN
MSLYDRTAVFGVGTAPHLFGNSVMHLDRERLRRVLDIHRYRNMGREPSQT
LLREQDLGQGSFGWVFKVGKKQQYCQEVAVKAAPLANTSWTEEAFFDTEG
IVWAGVMEMMALKRALLHNVSAVVKILGVAVEEGYLLIALEFAPNGTMGR
LVKACNERLVRQYGLQMLKIVEDLNASGIVHRDMKPENFLLDESWRAVAA
DFGLAHVNKEEGQGAHGEVEGTRAGRKDCTHVHIRPGL*
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mRNA from alignment at chr3:228818..230033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00710.1 ID=NO03G00710.1|Name=NO03G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp|location=Sequence derived from alignment at chr3:228818..230033+ (Nannochloropsis oceanica)
TACGTGCATATTTCCTGACAAAAATATCTTTTCGGTGTAGGCTATCTCAA
AGCACCTCTTTTTTTCCTCCTTGCTCGTTCGCCATTCCATCGCACTGTCT
TTCCACTTCCTTGCATGCACACAATGCTTTTATCACAGCTACTTCAAGCT
CTCATCCTGACACCCAATTATTGAGCTCCTATCAATTAAACATGCAAACA
TGAAAATAAACACACGGACGATGATGGGCAGGCTGTTGAAGGCATGTGAC
GAGCGCCTTATGAGGCAGTACCTCGTGGAAGGAGGGGGCTTTTTTCGTGA
CACCGATGCCCTAGAAGATGACGAAGGGCTCGAAGAAAAAGGTGATGACT
TAGAATTTGTAGAAGATGGGATGGTGGAGGAGGGGGAGTACAACTACTCT
GGATTCGACGAGCTAGCCGTTCGAATGGCGGTGCTTTCCCGTCAGACCTG
CCCAGAGGACTATGCCTGTCCCGTCGCTCACCCCTATCACCCTCTGAACA
TGAGTTTGTACGATCGCACCGCTGTGTTTGGCGTGGGGACAGCCCCGCAC
CTGTTTGGGAACAGCGTCATGCACCTGGACCGGGAGCGGCTGAGACGTGT
GTTGGACATCCACCGATACCGAAATATGGGCCGGGAGCCTTCGCAGACCT
TGCTGAGGGAGCAGGATTTGGGACAGGGGTCGTTTGGGTGGGTGTTCAAG
GTGGGGAAGAAGCAGCAATATTGCCAAGAGGTGGCTGTGAAGGCGGCACC
GCTCGCAAATACCTCGTGGACGGAGGAGGCTTTCTTTGATACGGAGGGCA
TCGTCTGGGCAGGGGTAATGGAGATGATGGCATTGAAACGCGCCCTTCTG
CACAACGTTTCGGCCGTTGTCAAGATTTTGGGCGTGGCGGTAGAGGAGGG
GTACCTTTTGATTGCGCTTGAATTTGCACCCAACGGGACGATGGGCAGGC
TAGTGAAGGCTTGTAACGAGCGCCTCGTGAGGCAGTACGGCCTTCAGATG
CTAAAAATCGTGGAAGATCTTAACGCAAGCGGAATCGTCCACAGGGACAT
GAAGCCTGAAAACTTTCTTTTGGACGAAAGTTGGCGAGCCGTAGCGGCTG
ATTTCGGCCTCGCGCACGTCAACAAGGAGGAAGGACAAGGCGCGCACGGA
GAGGTCGAGGGCACCAGAGCTGGACGGAAAGACTGTACACACGTACATAT
CCGACCTGGCTTGTAG
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Coding sequence (CDS) from alignment at chr3:228818..230033+

>NO03G00710.1 ID=NO03G00710.1|Name=NO03G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr3:228818..230033+ (Nannochloropsis oceanica)
ATGAAAATAAACACACGGACGATGATGGGCAGGCTGTTGAAGGCATGTGA
CGAGCGCCTTATGAGGCAGTACCTCGTGGAAGGAGGGGGCTTTTTTCGTG
ACACCGATGCCCTAGAAGATGACGAAGGGCTCGAAGAAAAAGGTGATGAC
TTAGAATTTGTAGAAGATGGGATGGTGGAGGAGGGGGAGTACAACTACTC
TGGATTCGACGAGCTAGCCGTTCGAATGGCGGTGCTTTCCCGTCAGACCT
GCCCAGAGGACTATGCCTGTCCCGTCGCTCACCCCTATCACCCTCTGAAC
ATGAGTTTGTACGATCGCACCGCTGTGTTTGGCGTGGGGACAGCCCCGCA
CCTGTTTGGGAACAGCGTCATGCACCTGGACCGGGAGCGGCTGAGACGTG
TGTTGGACATCCACCGATACCGAAATATGGGCCGGGAGCCTTCGCAGACC
TTGCTGAGGGAGCAGGATTTGGGACAGGGGTCGTTTGGGTGGGTGTTCAA
GGTGGGGAAGAAGCAGCAATATTGCCAAGAGGTGGCTGTGAAGGCGGCAC
CGCTCGCAAATACCTCGTGGACGGAGGAGGCTTTCTTTGATACGGAGGGC
ATCGTCTGGGCAGGGGTAATGGAGATGATGGCATTGAAACGCGCCCTTCT
GCACAACGTTTCGGCCGTTGTCAAGATTTTGGGCGTGGCGGTAGAGGAGG
GGTACCTTTTGATTGCGCTTGAATTTGCACCCAACGGGACGATGGGCAGG
CTAGTGAAGGCTTGTAACGAGCGCCTCGTGAGGCAGTACGGCCTTCAGAT
GCTAAAAATCGTGGAAGATCTTAACGCAAGCGGAATCGTCCACAGGGACA
TGAAGCCTGAAAACTTTCTTTTGGACGAAAGTTGGCGAGCCGTAGCGGCT
GATTTCGGCCTCGCGCACGTCAACAAGGAGGAAGGACAAGGCGCGCACGG
AGAGGTCGAGGGCACCAGAGCTGGACGGAAAGACTGTACACACGTACATA
TCCGACCTGGCTTGTAG
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Synonyms
Publications