NO03G00230.1, NO03G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00230.1
Unique NameNO03G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2412
Alignment locationchr3:70377..73532 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:70377..73532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00230.1 vs.
Match: EWM29571.1 (uncharacterized protein Naga_100006g11 [Nannochloropsis gaditana])

HSP 1 Score: 470.3 bits (1209), Expect = 5.800e-129
Identity = 243/305 (79.67%), Postives = 261/305 (85.57%), Query Frame = 0 
Query:   16 SSSPSSFSTSSFPQ-------SGRSSRSS--SGRPRRSPSLMPTLLLLLLVVPSATFRFSFAATDPATAAAAGDGRVEIYNSISKGGFFSQTWDVHHSKSKMRVRQVPGDGSCLFHAIYVALAHATNGSHPQEDYDDMCKAAGVLRQTALDYLSQDPNRLLTVTYNQDMKSQELLEMTSKEMGLSAEQYLARLRDPKEWGGGLEIVALANALERPIFLYELKPVGLLFWSRFVFKKMVECGMPKFSPNKSLHILIADCNFPDCAPYFYNKAGNHFLALFPCEDVPIVAVIEKKKAAAAAAAAATA 312
            SS P++   SSFP        S R +R S    R RRSP+LMPT LLLLLV PSATFRFSFAAT+  +  A GDGR+E+YNSIS+GGFFS+TWDVHHSKSKMRVRQVPGDGSCLFHAIYVALA+ATNGSHPQEDY+ MCKAAGVLRQTALDYLS DP+RLLTVTYNQDMKSQELL+MTSKEMGLSAEQYL RLRDPKEWGGGLEIVALANALERPIFLYELKPVGLLFWSRFVFKKMVECGMPKFSP KSLHILIADCNFPDCAPYFYNKAGNHFLALFPCED   V   +    A +AA  A++
Sbjct:    8 SSLPATQYCSSFPWPLSMISVSTRRARPSRRGARLRRSPTLMPTFLLLLLVAPSATFRFSFAATNFPSGTATGDGRLEVYNSISRGGFFSETWDVHHSKSKMRVRQVPGDGSCLFHAIYVALAYATNGSHPQEDYEAMCKAAGVLRQTALDYLSDDPSRLLTVTYNQDMKSQELLDMTSKEMGLSAEQYLVRLRDPKEWGGGLEIVALANALERPIFLYELKPVGLLFWSRFVFKKMVECGMPKFSPKKSLHILIADCNFPDCAPYFYNKAGNHFLALFPCEDASTVPTSDNSVPAPSAAPVASS 312
The following BLAST results are available for this feature:
BLAST of NO03G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29571.15.800e-12979.67uncharacterized protein Naga_100006g11 [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00230NO03G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00230.1NO03G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00230.1.cds1NO03G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00230.1.cds2NO03G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00230.1.cds3NO03G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00230.1.cds4NO03G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00230.1.cds5NO03G00230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00230.1 ID=NO03G00230.1|Name=NO03G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp
CTTGCCCCCATCGGAGGGGATGCAGAAGAGGTCCTTAAAAATAATTTAGA
GGACCCGATCACCACGGGTGCGGACATGAAGCGAGTAAAATAGCGATTTA
AGTGTGGAACGGATGCCTGGGCACGCCAGAATGTATCCACTGGCAGGTGT
GGTGGAGGGCATTTGTCAAAAGAGGCAGGAGAAGATGCCTTTGCTCTCCA
TCACGCGCTCGCAAGAAGAGGAAACAACGCTCGCGCAAGTCCATGGGCTC
CTACATGGACTGGTTTTCTGAATCCAATACATCTCACCTTTTTCCGCTCG
ACAGAACGGTAATACGCAATGCGATAGATGTGCACATTGCATTGATGCTT
CCGGTTGACCCGCGTTATATTTATTAAAGACGAAGAGTAGGCCAGCTAGC
TGATAACCCTGATCCTCCCCTCCCTTCCTAATACGACCAAACGCACCTTG
TCAACATTGCACACACCCACGTACACGACAGGAGGGGCCACTCCTATTCG
TGCGGTGGGCTGTTGTCGGAGGGCCGACAGTCGCGCATTTCCTCGTTTCG
TAGTTGCCTCTTAAGCAGGCGCAAGCAGCAGGTAGCAGCAGGTAGAAGCA
CAGCGACGCACGTCCCCTCACCTCAAGCAAACCATGCTGCTTCCATTCCC
ATTCCCTTCGAGGCACCAGCACTCCTTCTCCTCCTCCCCCTCCTCCTTTT
CCACCTCCTCCTTCCCTCAGAGCGGCAGATCCAGCCGTAGCAGCAGCGGC
CGGCCTCGGAGGTCTCCTTCGCTCATGCCCACCCTCCTTCTCCTCCTCCT
CGTCGTCCCAAGCGCCACCTTTCGCTTCTCCTTTGCGGCCACCGATCCGG
CCACGGCCGCAGCGGCGGGGGATGGACGCGTTGAAATTTATAACAGCATC
AGTAAAGGCGGGTTCTTTTCCCAGACATGGGACGTACATCACAGCAAGAG
CAAGATGCGCGTGCGCCAGGTTCCAGGCGACGGTTCCTGCCTCTTTCACG
CCATTTACGTGGCCTTAGCCCACGCCACCAATGGATCACACCCGCAAGAA
GACTATGACGACATGTGCAAGGCCGCGGGGGTGCTGCGACAGACCGCCCT
GGACTACCTCTCCCAAGACCCGAACCGTTTATTGACCGTTACATACAACC
AAGACATGAAAAGCCAGGAGCTCCTGGAGATGACCAGCAAGGAAATGGGG
CTATCCGCAGAACAGTATTTGGCTCGCCTGCGGGACCCTAAGGAGTGGGG
CGGGGGCCTGGAGATTGTTGCCTTGGCCAATGCGTTGGAACGGCCCATAT
TTCTGTACGAGCTCAAGCCGGTGGGGTTGCTGTTTTGGTCGAGGTTTGTC
TTCAAAAAAATGGTCGAGTGCGGCATGCCCAAGTTCTCGCCGAACAAGAG
CCTGCACATCCTCATCGCCGACTGCAACTTCCCAGACTGTGCTCCCTACT
TCTACAACAAGGCCGGCAACCACTTCCTGGCCCTCTTCCCGTGTGAAGAC
GTGCCCATAGTAGCCGTCATTGAGAAGAAGAAGGCTGCTGCTGCTGCTGC
TGCTGCTGCTACAGCTGCTGGAAGTGCTGCTCCCACCCCTGGGCTGGCGA
GCAGTAGCAGTAGCATGGCAGAGGGAGGGAGGGAGGGAAGGGCGAGTTTC
GGTAGACGGGTGTTTTTGAGAGGGCGGATGCTGAGACGACTGGAGGCAAA
GATTAAGGAAACCTTGTTTTTCAGGGGCAGTGGTGGAGGGGGAGGGGCCG
GAGGAAGAAGGAAGGGAGGGCGGCTGGGAGGGAAGGGGAAGACCAAGAGA
AGATAGGGAAAGAGGGAGGGAGGCGGAGGGAAAAGCGGAAGAACAAATGT
AAGAAATGACGACCGTAGTAAATAGGTTTGACTGAGTGGCGCAGATGAGA
GAGAGAAGGGGGAGAGGACGAGGGTTTCAGGACGCGCGTAGTGCTGACAG
AGCACACACACACACACACACACACATATATATATATATATAATATTGGG
AATCGAATCAAGTGGCTTGGGAGGGAGAGGGGGGAGATGCTCGTGTATAT
ATAGATTTCCTCCCGTCCACCTGATACTCCCACCCATCCTCGAGCCTCAG
CGATCCCCTCTCTCTTTCTAGCATTGCTTTGTGATAAAGGATCAACAGGA
GGGGAAGAAGTCAATCGGAATTACAGGGCGTGCATCGAGGGGTGGCTTTG
GGGGGCTACGCTGCAACATCTATCCGAGATGCAAGCGTACTTTCCATAGA
GTGAGGAAGAGAATAAAGGAAGAGTCATTGTGGCTAGTCTGACACCTAGA
TATGCTTTGGAGGCTCGTAACGCTTGCTTCTCTGTCTCGTTCCGAGTCCA
GGGATGCGACGAAACAACCTTAGAATATAATACCGACGACAAGGCAAGCA
AAGACACAGGCA
back to top

protein sequence of NO03G00230.1

>NO03G00230.1-protein ID=NO03G00230.1-protein|Name=NO03G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MLLPFPFPSRHQHSFSSSPSSFSTSSFPQSGRSSRSSSGRPRRSPSLMPT
LLLLLLVVPSATFRFSFAATDPATAAAAGDGRVEIYNSISKGGFFSQTWD
VHHSKSKMRVRQVPGDGSCLFHAIYVALAHATNGSHPQEDYDDMCKAAGV
LRQTALDYLSQDPNRLLTVTYNQDMKSQELLEMTSKEMGLSAEQYLARLR
DPKEWGGGLEIVALANALERPIFLYELKPVGLLFWSRFVFKKMVECGMPK
FSPNKSLHILIADCNFPDCAPYFYNKAGNHFLALFPCEDVPIVAVIEKKK
AAAAAAAAATAAGSAAPTPGLASSSSSMAEGGREGRASFGRRVFLRGRML
RRLEAKIKETLFFRGSGGGGGAGGRRKGGRLGGKGKTKRR*
back to top

mRNA from alignment at chr3:70377..73532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00230.1 ID=NO03G00230.1|Name=NO03G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=3156bp|location=Sequence derived from alignment at chr3:70377..73532+ (Nannochloropsis oceanica)
CTTGCCCCCATCGGAGGGGATGCAGAAGAGGTCCTTAAAAATAATTTAGA
GGACCCGATCACCACGGGTGCGGACATGAAGCGAGTAAAATAGCGATTTA
AGTGTGGAACGGATGCCTGGGCACGCCAGAATGTATCCACTGGCAGGTGT
GGTGGAGGGCATTTGTCAAAAGAGGCAGGAGAAGATGCCTTTGCTCTCCA
TCACGCGCTCGCAAGAAGAGGAAACAACGCTCGCGCAAGTCCATGGGCTC
CTACATGGACTGGTTTTCTGAATCCAATACATCTCACCTTTTTCCGCTCG
ACAGAACGGTAATACGCAATGCGATAGATGTGCACATTGCATTGATGCTT
CCGGTTGACCCGCGTTATATTTATTAAAGACGAAGAGTAGGCCAGCTAGC
TGATAACCCTGATCCTCCCCTCCCTTCCTAATACGACCAAACGCACCTTG
TCAACATTGCACACACCCACGTACACGACAGGAGGGGCCACTCCTATTCG
TGCGGTGGGCTGTTGTCGGAGGGCCGACAGTCGCGCATTTCCTCGTTTCG
TAGTTGCCTCTTAAGCAGGCGCAAGCAGCAGGTAGCAGCAGGTAGAAGCA
CAGCGACGCACGTCCCCTCACCTCAAGCAAACCATGCTGCTTCCATTCCC
ATTCCCTTCGAGGCACCAGCACTCCTTCTCCTCCTCCCCCTCCTCCTTTT
CCACCTCCTCCTTCCCTCAGAGCGGCAGATCCAGCCGTAGCAGCAGCGGC
CGGCCTCGGAGGTCTCCTTCGCTCATGCCCACCCTCCTTCTCCTCCTCCT
CGTCGTCCCAAGCGCCACCTTTCGCTTCTCCTTTGCGGCCACCGATCCGG
CCACGGCCGCAGCGGCGGGGGATGGACGCGTTGAAATTTATAACAGCATC
AGTAAAGGCGGGTTCTTTTCCCAGACATGGGACGTACATCACAGCAAGAG
CAAGATGCGCGTGCGCCAGGTGAGGAAAAAGAAGGGAGGGAGGGATGGGC
CGGAAGGAGACTCTGTGGAGGGACTGAGAGAAAAGGAGAGTGGCAACAGA
CAGGATATTGTAAATGACTTTCGTAACGACAAGCTATCCACATCGCGTCT
TCCTCCCTCATTTCCTCCCTCACTCCCTCCCTCCCTCTCCCCGCTCCACA
CTCGCAGGTTCCAGGCGACGGTTCCTGCCTCTTTCACGCCATTTACGTGG
CCTTAGCCCACGCCACCAATGGATCACACCCGCAAGAAGACTATGACGAC
ATGTGCAAGGCCGCGGGGGTGCTGCGACAGACCGCCCTGGACTACCTCTC
CCAAGACCCGAACCGTTTATTGACCGTTACATACAACCAAGACATGAAAA
GCCAGGAGCTCCTGGAGATGACCAGCAAGGAAATGGGGCTATCCGCAGAA
CAGTATTTGGTAGGTCATGAGGAAGAGGGTCAAGCTGTAACGAGTCTCCG
TAGAGAGCGATCTTACCCTCTCTCCCTCCCTCCCTCCCTCCCTACCTCCC
TCCCTCCTCCCTTCTCCAGGCTCGCCTGCGGGACCCTAAGGAGTGGGGCG
GGGGCCTGGAGATTGTTGCCTTGGCCAATGCGTTGGAACGGCCCATATTT
CTGTACGAGCTCAAGCCGGTGGGGTTGCTGTTTTGGTCGAGGTAGGTAGG
TAGGGAGGGAGGGAGGGCGGGCTCGCAGGCGGGGAGGAGTGGTTGGACAG
GAGCCGCCTTTCTTTTTCTCGACGATAGCTAGTCTAGACGGCTATGGCTA
AGGGGATGACTGGACATGATGCAGAGAACAATCGCAGTGAGACGGAGAAC
ATCCATCGCATGCGTGCTCCTTCCCCTCCCGTGCCTTCCTCCCACCCACC
CTCTCTCCCTCCCTCCCTTGTTCAGGTTTGTCTTCAAAAAAATGGTCGAG
TGCGGCATGCCCAAGTTCTCGCCGAACAAGAGCCTGCACATCCTCATCGC
CGACTGCAACTTCCCAGACTGTGCTCCCTACTTCTACAACAAGGTAAGCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCTTCTTTCGTT
CTCTTGTGCCCTATAGTTCTCGGAGATGGTTAGCCGTCCTTCCCTCCCTC
TCTCCCTCCCGCCCGTCTTTCCTCCCTCTCTCCCTTCCTCCCCTCTTTTG
CGGTTAACTCCAATCTCTTCGGGTTCCCCTCTTATGCCTCCCTCCCCACC
CTTAGGCCGGCAACCACTTCCTGGCCCTCTTCCCGTGTGAAGACGTGCCC
ATAGTAGCCGTCATTGAGAAGAAGAAGGCTGCTGCTGCTGCTGCTGCTGC
TGCTACAGCTGCTGGAAGTGCTGCTCCCACCCCTGGGCTGGCGAGCAGTA
GCAGTAGCATGGCAGAGGGAGGGAGGGAGGGAAGGGCGAGTTTCGGTAGA
CGGGTGTTTTTGAGAGGGCGGATGCTGAGACGACTGGAGGCAAAGATTAA
GGAAACCTTGTTTTTCAGGGGCAGTGGTGGAGGGGGAGGGGCCGGAGGAA
GAAGGAAGGGAGGGCGGCTGGGAGGGAAGGGGAAGACCAAGAGAAGATAG
GGAAAGAGGGAGGGAGGCGGAGGGAAAAGCGGAAGAACAAATGTAAGAAA
TGACGACCGTAGTAAATAGGTTTGACTGAGTGGCGCAGATGAGAGAGAGA
AGGGGGAGAGGACGAGGGTTTCAGGACGCGCGTAGTGCTGACAGAGCACA
CACACACACACACACACACATATATATATATATATAATATTGGGAATCGA
ATCAAGTGGCTTGGGAGGGAGAGGGGGGAGATGCTCGTGTATATATAGAT
TTCCTCCCGTCCACCTGATACTCCCACCCATCCTCGAGCCTCAGCGATCC
CCTCTCTCTTTCTAGCATTGCTTTGTGATAAAGGATCAACAGGAGGGGAA
GAAGTCAATCGGAATTACAGGGCGTGCATCGAGGGGTGGCTTTGGGGGGC
TACGCTGCAACATCTATCCGAGATGCAAGCGTACTTTCCATAGAGTGAGG
AAGAGAATAAAGGAAGAGTCATTGTGGCTAGTCTGACACCTAGATATGCT
TTGGAGGCTCGTAACGCTTGCTTCTCTGTCTCGTTCCGAGTCCAGGGATG
CGACGAAACAACCTTAGAATATAATACCGACGACAAGGCAAGCAAAGACA
CAGGCA
back to top

Coding sequence (CDS) from alignment at chr3:70377..73532+

>NO03G00230.1 ID=NO03G00230.1|Name=NO03G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr3:70377..73532+ (Nannochloropsis oceanica)
ATGCTGCTTCCATTCCCATTCCCTTCGAGGCACCAGCACTCCTTCTCCTC
CTCCCCCTCCTCCTTTTCCACCTCCTCCTTCCCTCAGAGCGGCAGATCCA
GCCGTAGCAGCAGCGGCCGGCCTCGGAGGTCTCCTTCGCTCATGCCCACC
CTCCTTCTCCTCCTCCTCGTCGTCCCAAGCGCCACCTTTCGCTTCTCCTT
TGCGGCCACCGATCCGGCCACGGCCGCAGCGGCGGGGGATGGACGCGTTG
AAATTTATAACAGCATCAGTAAAGGCGGGTTCTTTTCCCAGACATGGGAC
GTACATCACAGCAAGAGCAAGATGCGCGTGCGCCAGGTTCCAGGCGACGG
TTCCTGCCTCTTTCACGCCATTTACGTGGCCTTAGCCCACGCCACCAATG
GATCACACCCGCAAGAAGACTATGACGACATGTGCAAGGCCGCGGGGGTG
CTGCGACAGACCGCCCTGGACTACCTCTCCCAAGACCCGAACCGTTTATT
GACCGTTACATACAACCAAGACATGAAAAGCCAGGAGCTCCTGGAGATGA
CCAGCAAGGAAATGGGGCTATCCGCAGAACAGTATTTGGCTCGCCTGCGG
GACCCTAAGGAGTGGGGCGGGGGCCTGGAGATTGTTGCCTTGGCCAATGC
GTTGGAACGGCCCATATTTCTGTACGAGCTCAAGCCGGTGGGGTTGCTGT
TTTGGTCGAGGTTTGTCTTCAAAAAAATGGTCGAGTGCGGCATGCCCAAG
TTCTCGCCGAACAAGAGCCTGCACATCCTCATCGCCGACTGCAACTTCCC
AGACTGTGCTCCCTACTTCTACAACAAGGCCGGCAACCACTTCCTGGCCC
TCTTCCCGTGTGAAGACGTGCCCATAGTAGCCGTCATTGAGAAGAAGAAG
GCTGCTGCTGCTGCTGCTGCTGCTGCTACAGCTGCTGGAAGTGCTGCTCC
CACCCCTGGGCTGGCGAGCAGTAGCAGTAGCATGGCAGAGGGAGGGAGGG
AGGGAAGGGCGAGTTTCGGTAGACGGGTGTTTTTGAGAGGGCGGATGCTG
AGACGACTGGAGGCAAAGATTAAGGAAACCTTGTTTTTCAGGGGCAGTGG
TGGAGGGGGAGGGGCCGGAGGAAGAAGGAAGGGAGGGCGGCTGGGAGGGA
AGGGGAAGACCAAGAGAAGATAG
back to top
Synonyms
Publications