NO03G00060.1, NO03G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00060.1
Unique NameNO03G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr3:16312..17546 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:16312..17546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00060.1 vs.
Match: EWM29983.1 (ubiquitin-conjugating enzyme e2 [Nannochloropsis gaditana])

HSP 1 Score: 328.2 bits (840), Expect = 1.700e-86
Identity = 165/176 (93.75%), Postives = 171/176 (97.16%), Query Frame = 0 
Query:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEIVEQSWIADGDDDEDEEEEEEEEEEEVEGEEGG 177
            MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKE+VEQSWIAD DDD+++E+EE EEEE  E E+GG
Sbjct:    1 MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEGGTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEVVEQSWIADDDDDDEDEDEEGEEEEGAEKEKGG 176
The following BLAST results are available for this feature:
BLAST of NO03G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29983.11.700e-8693.75ubiquitin-conjugating enzyme e2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00060NO03G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00060.1NO03G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00060.1.cds1NO03G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00060.1.cds2NO03G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00060.1.cds3NO03G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00060.1.cds4NO03G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00060.1.cds5NO03G00060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00060.1 ID=NO03G00060.1|Name=NO03G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp
ATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCGGCTACA
GAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACAATATCA
TGACCTGGCAGGCGGTCATCTTCGGACCTGACGACACGCCCTGGGAAGGC
GGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGACTACCCCAACAAGGC
TCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCCCAACATTTACAACG
ACGGCCAGATCTGTCTCGACATCCTGCAAAACCAGTGGAGCCCCATCTAT
GACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGACCCCAA
CCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGGACAATC
GGCGAGAGTACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGCTGGATC
GCGGATGGCGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGAAGAGGA
GGAGGAGGTAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGGCGGAAG
GTGAGCATGCATGA
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protein sequence of NO03G00060.1

>NO03G00060.1-protein ID=NO03G00060.1-protein|Name=NO03G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEG
GTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIY
DVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEIVEQSWI
ADGDDDEDEEEEEEEEEEEVEGEEGGKGESAAEGEHA*
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mRNA from alignment at chr3:16312..17546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00060.1 ID=NO03G00060.1|Name=NO03G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp|location=Sequence derived from alignment at chr3:16312..17546- (Nannochloropsis oceanica)
ATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCGGCTACA
GAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACAATGTAC
GTTCGATCGACGCGATGGAATATAAGAAATAGCTGTTGCTGCGCTGTCCA
CCCGAGACAGTCCCCTAAAGCCCTCCTTTTATTCCTTCCTGCTTCCCTCT
CTCCCAGATCATGACCTGGCAGGCGGTCATCTTCGGACCTGACGACACGC
CCTGGGAAGGCGGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGACTAC
CCCAACAAGGTAGGCAGGGAGGGAGGGAGGAGTTGGTATGCAGGCAGCGA
GTAGCTCAAGCATTTTATCGGTGCATTGTGACAGGGTGCGATAAGAGCCA
GACAGCCATCATTTCATACATCTGGCCCTGTCATAATCCCCTTCCTCCCT
TTCTCTCTTCTTTCTTTCTCCCGCCATAGGCTCCGGCGGTGCGATTTGTG
ACGAAGATGTTCCACCCCAACATTTACAACGACGGCCAGATCTGTCTCGG
TACGTTGGTAGGGAGAAGGAAAAAAAGGGAAAGAAAAAGGGACACGAGGA
AGTGAGGAGGAGAAGAGCGACAAATTGTGTAAATGTAAGGGGTGTAGAAG
CTGAGGTGCCACTTTATGCGCCCCTCCCTCATTGCCCTCCTCCTTGTCAA
CCCCCTCCTTTCCCTGACTAGACATCCTGCAAAACCAGTGGAGCCCCATC
TATGACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGACCC
CAACCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGGCAC
GTGATAGCGTAGCCTCGCCCTCCTTCCTTCCCTACTTCGCTCCCTCCCGT
CTTATTTTTGCAGCTTTAGTTCGTTGGTTTAGCGAAGCGAATATTTTTGG
TTGCCGCAGAGAGGAGTGAGGAAAAGTCCTTTTATTTCAAATTAATACCT
GTACCATCAACCCTTCACTCGTCCTCCGTCCCTCTCCCCCTCTCTCTATC
CGTCCCCCCCTTAGGACAATCGGCGAGAGTACAATCGCCGCGTGAAGGAG
ATTGTCGAACAAAGCTGGATCGCGGATGGCGACGACGACGAGGATGAGGA
GGAAGAGGAGGAGGAAGAGGAGGAGGAGGTAGAGGGCGAGGAAGGGGGTA
AGGGAGAGTCGGCGGCGGAAGGTGAGCATGCATGA
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Coding sequence (CDS) from alignment at chr3:16312..17546-

>NO03G00060.1 ID=NO03G00060.1|Name=NO03G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr3:16312..17546- (Nannochloropsis oceanica)
ATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCGGCTACA
GAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACAATATCA
TGACCTGGCAGGCGGTCATCTTCGGACCTGACGACACGCCCTGGGAAGGC
GGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGACTACCCCAACAAGGC
TCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCCCAACATTTACAACG
ACGGCCAGATCTGTCTCGACATCCTGCAAAACCAGTGGAGCCCCATCTAT
GACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGACCCCAA
CCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGGACAATC
GGCGAGAGTACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGCTGGATC
GCGGATGGCGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGAAGAGGA
GGAGGAGGTAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGGCGGAAG
GTGAGCATGCATGA
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Synonyms
Publications