NO03G00050.1, NO03G00050.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G00050.1
Unique Name	NO03G00050.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1437
Alignment location	chr3:11853..14803 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:11853..14803 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G00050.1 vs.
Match: EWM29976.1 (phosphoglycerate mutase family protein [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 4.400e-70
Identity = 137/167 (82.04%), Postives = 149/167 (89.22%), Query Frame = 0

Query:  311 VQQAKKDRSNFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNIIIVTHGLTLRLLLMRWFKLTVETFESTTNPPNGSLVVMTRKEGPAGGRSGGGVYEMAPESAALISLSCDSVPVGASLNTPCS-FDDSRGGVEEGECDRESARPLSASIQSLSI 477
            +QQAKK+R NFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNI+IVTHGLTLRLLLMRWFKLTVETFESTTNPPNGS VVMTRKEGP GGRSGGGVYEMAPESAALISLSCDSVPVGAS+ TPCS F+D+ G  ++   +     PLS +++ LSI
Sbjct:    1 MQQAKKERCNFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNIVIVTHGLTLRLLLMRWFKLTVETFESTTNPPNGSFVVMTRKEGPRGGRSGGGVYEMAPESAALISLSCDSVPVGASIMTPCSNFEDNTGREQKNGGEERVMTPLSNAVERLSI 167

The following BLAST results are available for this feature:

BLAST of NO03G00050.1 vs.

BLAST of NO03G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29976.1	4.400e-70	82.04	phosphoglycerate mutase family protein [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G00050	NO03G00050	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00050.1	NO03G00050.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00050.1.cds1	NO03G00050.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds2	NO03G00050.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds3	NO03G00050.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds4	NO03G00050.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds5	NO03G00050.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds6	NO03G00050.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds7	NO03G00050.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds8	NO03G00050.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds9	NO03G00050.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00050.1.cds10	NO03G00050.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:11853..14803-
coding sequence from alignment at chr3:11853..14803-

mRNA sequence

>NO03G00050.1 ID=NO03G00050.1|Name=NO03G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ATGAGCGACACAGCAGAGGAAGGAGAGGAAGGGGGGCAATCTAGGAGCTG
CAGCAATGGCAACTTGGACACCCCACTCAATGACTCCATCACCAGCAAGA
ACATGCCCATCCATGACTCACAACCGGCTACTACGATGCGGCGTATCCCC
TCCTTGGTATTGCCTGAAGAGGCCATCTTTGGGACGAGCACTGCCCCCCC
GTCAGACTGCGCCGAGTGTCGTCTACTTCACCAGCAGCACCACAGACACC
AACACCAGCAGCATCAGAATCAGCACCACCAACAGCAATTTCAATCAGCT
GAAGGCGGAAGAAGAGGAGGGGAAAGCGGACAAACAGTTTTATCACAACC
GTTCGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAATGGAGGACCGAGGC
TACCCTCTCCCAAGAACATGTTCAACAAGAAGCGGTTTACATTCTTGTCG
GGTGGGAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAATATAA
AGTGAAGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCAAACAC
ACGCCTCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTTCCCCT
TCCCCCCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCCGTCATGG
CGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACCCCTGATT
GGAAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGACCGGA
CGGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTATACCTC
ACCCTACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAGTCGCTCG
AGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCACGGAGCAG
CAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAGAAGGA
TCGATCCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGCGAGTCTG
GCCTGGATGTGTACACGCGCGTGACCTCCTTTATCTCAACCATGTTCAGG
GACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCATCATCGT
TACGCACGGCCTCACCCTCAGGCTGCTGCTAATGCGCTGGTTCAAGCTGA
CGGTGGAGACCTTCGAGAGCACCACGAACCCGCCCAACGGCTCCCTTGTG
GTCATGACCCGCAAGGAGGGTCCGGCAGGAGGGAGGTCGGGGGGAGGGGT
GTACGAGATGGCGCCTGAGTCTGCGGCCTTAATCTCGCTCAGCTGCGACT
CGGTCCCCGTTGGCGCCTCGCTCAATACTCCATGCAGCTTCGACGACAGC
AGAGGGGGGGTGGAGGAAGGGGAATGTGACAGAGAGTCAGCGAGGCCTCT
TTCGGCCAGTATCCAAAGCCTGTCCATTGCGAAGTAG

protein sequence of NO03G00050.1

>NO03G00050.1-protein ID=NO03G00050.1-protein|Name=NO03G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MSDTAEEGEEGGQSRSCSNGNLDTPLNDSITSKNMPIHDSQPATTMRRIP
SLVLPEEAIFGTSTAPPSDCAECRLLHQQHHRHQHQQHQNQHHQQQFQSA
EGGRRGGESGQTVLSQPFGGGGGGGGGGNGGPRLPSPKNMFNKKRFTFLS
GGSKEGGKDKAAETEYKVKGRAAPGHLPSLLQTHASSAFSLVTPPIVPSP
SPHQITKPHRIILVRHGESTGNADERVYVQTPDWKVPLSPVGHEQARETG
RQLKALIGDEPLYIYTSPYRRTKQTLSDMLESLEDNLKVGIREEPRITEQ
QFGNFQCHQLVQQAKKDRSNFGRFYFRFPNGESGLDVYTRVTSFISTMFR
DFADGHICRPDLNIIIVTHGLTLRLLLMRWFKLTVETFESTTNPPNGSLV
VMTRKEGPAGGRSGGGVYEMAPESAALISLSCDSVPVGASLNTPCSFDDS
RGGVEEGECDRESARPLSASIQSLSIAK*

mRNA from alignment at chr3:11853..14803-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G00050.1 ID=NO03G00050.1|Name=NO03G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp|location=Sequence derived from alignment at chr3:11853..14803- (Nannochloropsis oceanica)
ATGAGCGACACAGCAGAGGAAGGAGAGGAAGGGGGGCAATCTAGGAGCTG
CAGCAATGGCAACTTGGACACGTAAGTTGCCCCTCCAACCCCATATCACG
TGCCCTACTACCCTCACCCCACTTCCCCCCTCCCACGCGCTACTTACAGC
CCACTCAATGACTCCATCACCAGCAAGAACATGCCCATCCATGACTCACA
ACCGGCTACTACGATGCGGCGTATCCCCTCCTTGGTATTGCCTGAAGAGG
CCATCTTTGGGACGAGCACTGCCCCCCCGTCAGACTGCGCCGAGTGTCGT
CTACTTCACCAGCAGCACCACAGACACCAACACCAGCAGCATCAGAATCA
GCACCACCAACAGCAATTTCAATCAGCTGAAGGCGGAAGAAGAGGAGGGG
AAAGCGGACAAACAGTTTTATCACAACCGTTCGGAGGAGGAGGAGGAGGA
GGAGGGGGAGGAAATGGAGGACCGAGGCTACCCTCTCCCAAGAACATGTT
CAACAAGAAGCGGTTTACATTCTTGTCGGGTGGGAGCAAAGAAGGAGGAA
AAGATAAAGCCGCAGAGACGGAATATAAAGTGAAGGGGCGAGCGGCACCC
GGGCATCTACCTTCGCTATTGCAAACACACGCCTCTTCGGCCTTTTCCCT
CGTGACGCCTCCAATAGTGCCTTCGTGAGTCGAACGGGGGGGATACCATG
GGATGTGGGGGAATGAGGGGAGGATGTGAAAGAGAACGAGGACGAGGAGA
AGTCATACGATAAGACAGAAGGCACATATACAAAAGCTGCTACTCCACCA
CTCTACCACTCTCCACCTCACGCTCCCTTCCTCCCTCCCCCTTTCTCTTC
CGTTCAAAGCCCTTCCCCCCACCAGATCACCAAGCCCCACCGCATCATCC
TCGTCCGTCATGGCGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTC
CAAACCCCTGATTGGAAGGTAGGGAGGGAGCGAGGGCGGGCGGGAGACGG
CGGGCGAGCGGGAGGGAAGGAAAGATGATTCTTTTTTCCTGATGCCACAA
TCGTCCCTATACAATTTTCATTTGTACGTGACCGAGAATGAACCAATTAT
GTACGGGAGAATACACACCGTCCTTCTTGCGACTGTAGCCCCTCGCTCTT
CGCGGCTTTTCACCTCCCACCCTCCCCACCTGCCCAGGTCCCTCTATCCC
CCGTCGGCCACGAGCAAGCCCGCGAGACCGGACGGCAGCTCAAGGCGCTG
ATAGGGGACGAGCCGCTCTACATCTATACCTCACCCTACAGACGGTGCGG
CGGGAGGAAGGGAGGGAGGGAGGAATGTGGCGTGGTGATGAGTGCCCGTT
CCGATCTTGTCCTGACGTCGGACTATCCTTTTCCTTGAGAGGTCTTGAGG
ACCCTTATGGAGGACCAAATACCCATTTTGCTCATCCGCCTCCCTCCCTT
ACTCCCCCCTTCCCGTCAGGACGAAGCAGACCCTGAGCGACATGTTGGAG
TCGCTCGAGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCAC
GGAGCAGGTCTACAAAAGGGAGGGGGGAGTGCGGGCTGTGGGGGGATCTG
ACCGGACGAGCACCCACAGCGAAATAGGAGAGCGAGACCGCCCTCCTCCT
CACTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTTAGCAATTCGGC
AACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAGAAGGATCGATCCAA
CTTCGGTCGCTTCTACTTCCGGTCAGCGCGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGA
GGGAGTGAGGGAGGGAGTGAGTGAGTTAGTGAGTGAGTGAGGGAGGGAGG
GAGGGAGATGGATTATGATGAAAATGACAAGGAAGAGGGGGACAAGCTTG
GAGATCCGAGTAGAAAGGATGGATATCCGTAATAATCTTCCCTCAGCCTT
CCCTCCCTCCCTCCCTTCCTCCGTCCCACCCATCCCCTTGCCATCAGGTT
TCCAAACGGCGAGTCTGGCCTGGATGTGTACACGCGCGTGACCTCCTTTA
TCTCAACCATGTTCAGGTGCAGGCGGGCAGGCAGGCAGATAAAGAGGGAG
GGAGAATGGGACGGAACCAACCTTATTGTATCATATCAATATGGCAAACA
TATTGAATCTTATTGTATCATATCAATATGGTAAATATATTGAATCACCT
CAACAGGGACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCA
TCATCGTTACGCACGGCCTCACCCTCAGGCTGGTGCGCCACGAGGGGAGA
GGAGGGAGGGAGGAGAGGGAGGGAAAAGGGTTCGGGAAAAGGAAGTGAAG
ATGAATCTGGCGGTGGCATGTAAGTGCACCTCCATTTACTCCTTTCTTGT
TTCCCCCCTTCCCCCCCCAGCTGCTAATGCGCTGGTTCAAGCTGACGGTG
GAGACCTTCGAGAGCACCACGAACCCGCCCAACGGCTCCCTTGTGGTCAT
GACCCGCAAGGAGGGTCCGGCAGGAGGGAGGTCGGGGGGAGGGGTGTACG
AGATGGCGCCTGAGTCTGCGGCCTTAATCTCGCTCAGGCAAGTGGGGAGG
GGGGGGCGGAAAGGAGGGAAGGAGGGGGTAGAAGGGGCTGCAGGGCCACT
GTGTGAGATGATTTCTCCTGTGGGCCGTATTCCTCTCCTTTGCACCGACC
ATCCATTGCCCTGCTCGATCGGTCTCACCTCTTCCTTGATCTGACTACTC
CCACAGCTGCGACTCGGTCCCCGTTGGCGCCTCGCTCAATACTCCATGCA
GCTTCGACGACAGCAGAGGGGGGGTGGAGGAAGGGGAATGTGACAGAGAG
TCAGCGAGGCCTCTTTCGGCCAGTATCCAAAGCCTGTCCATTGCGAAGTA
G

Coding sequence (CDS) from alignment at chr3:11853..14803-

>NO03G00050.1 ID=NO03G00050.1|Name=NO03G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr3:11853..14803- (Nannochloropsis oceanica)
ATGAGCGACACAGCAGAGGAAGGAGAGGAAGGGGGGCAATCTAGGAGCTG
CAGCAATGGCAACTTGGACACCCCACTCAATGACTCCATCACCAGCAAGA
ACATGCCCATCCATGACTCACAACCGGCTACTACGATGCGGCGTATCCCC
TCCTTGGTATTGCCTGAAGAGGCCATCTTTGGGACGAGCACTGCCCCCCC
GTCAGACTGCGCCGAGTGTCGTCTACTTCACCAGCAGCACCACAGACACC
AACACCAGCAGCATCAGAATCAGCACCACCAACAGCAATTTCAATCAGCT
GAAGGCGGAAGAAGAGGAGGGGAAAGCGGACAAACAGTTTTATCACAACC
GTTCGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAATGGAGGACCGAGGC
TACCCTCTCCCAAGAACATGTTCAACAAGAAGCGGTTTACATTCTTGTCG
GGTGGGAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAATATAA
AGTGAAGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCAAACAC
ACGCCTCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTTCCCCT
TCCCCCCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCCGTCATGG
CGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACCCCTGATT
GGAAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGACCGGA
CGGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTATACCTC
ACCCTACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAGTCGCTCG
AGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCACGGAGCAG
CAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAGAAGGA
TCGATCCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGCGAGTCTG
GCCTGGATGTGTACACGCGCGTGACCTCCTTTATCTCAACCATGTTCAGG
GACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCATCATCGT
TACGCACGGCCTCACCCTCAGGCTGCTGCTAATGCGCTGGTTCAAGCTGA
CGGTGGAGACCTTCGAGAGCACCACGAACCCGCCCAACGGCTCCCTTGTG
GTCATGACCCGCAAGGAGGGTCCGGCAGGAGGGAGGTCGGGGGGAGGGGT
GTACGAGATGGCGCCTGAGTCTGCGGCCTTAATCTCGCTCAGCTGCGACT
CGGTCCCCGTTGGCGCCTCGCTCAATACTCCATGCAGCTTCGACGACAGC
AGAGGGGGGGTGGAGGAAGGGGAATGTGACAGAGAGTCAGCGAGGCCTCT
TTCGGCCAGTATCCAAAGCCTGTCCATTGCGAAGTAG

Synonyms

Publications