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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1625902..1628184 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G06080.1 vs.
Match: EWM30068.1 (YAP-binding/Alf4/Glomulin [Nannochloropsis gaditana]) HSP 1 Score: 554.3 bits (1427), Expect = 5.900e-154 Identity = 368/771 (47.73%), Postives = 462/771 (59.92%), Query Frame = 0
Query: 7 DDDSELTALLEQALLSTSDSNAGQALGQVVQARLTDVRAVPSIVARLWHTFFAGNKDDDASMRESES----KVLHFIGWDLFEALVPWARGGDDCSSSSSDAMDSSSASPFSSTSSSP-SPFLIPLLSAILGLHSGRERLLMLQEALALAPRRTHPSFVPWLVAQMPPALAVIPAPRRKSFLDSICRVWREEAVKALAAMEE-GEDGEREEEEEEEKGDVEEEEDGKGKERRLTGKEAQAILMSVLEAVEALVPRIVTRRGQMMEEES--VEDAAAAVVEMGYVIGVLLALLLMAPPLPPPPPPSS----------ALGKVHMHQPSNSFCFAERVTAVLARALTCTHLVSFETLLRHHRGLKEQRRTIPHTHYVQSGARNTSINETDEYNDNITDEKDGVSRERKRFTAIEVGPLIPASAVASTPFAWEPAGLSLAAYHLFIHPPSLPVSLLPRVLASAYVGQLLAVPAAFLLQKPQAAPCGLALLERGTLASF-PSQGGERG--RVKRGGEGVLECRALGGGSSRSDRNEGGKEEGGATEDRE---EEDTWASLIKGLTGCMVFLADDTIRQRAYLALPRVLALLTYRSRYFCLAAALPRSHHPTIQALLISQAQKTLLLATTPTTS-TPSSFPPSPWHDLTRLRVFYAPVLSRTCAAKPEVLVSWAAATTTSRSSSGGGAATGTEGQLDALLSALNFLRFLRLKGRFEEGGEEEGEWWPKLRELQGRVREILSKPHQQRNAFRLAMVDEVLAILLGKDGEGKEDKKEG 753
DDD +L LL AL S+ D Q LGQ+++ARLTD V RLW F + ++ A +E ++ KVLH +GWDLF AL PWARG D S +++ S S SSTSSS SPFLIPL++AIL H+GRERL++LQEA++ P RTHPSFVPWL+ QMP A A+I P R F++++CR+W E+ KA AME+ G DGE D++++ K ++T EA A+LM+VL A++ + + R E+ S E+AA + + YV+G+LL+LL APP+PPP PP S A V + C R VL + SF+ LLRHHRGL E P +E + K+G R L P+ VAST FAWEP GLSLA YHL +HPPSLP ++PRVL Y+ LLA+PAA LLQ P A CGLALLERG + PS GE R GGEG L CRA G S S + G T E +EDTW SL++GLT CMVFLADD +RQRAY LPRVL LLTY S+Y CLA ALPR+HHP+IQALLIS AQK+ LLAT P +S P+S PPSPWH L LRVFYAP LS+ C AKPE+LVSWA+ +T + ++G EG+LD LLSALNF R L LKG + GEEE WWP L L+ ++ +IL KPHQ+RNAFRLAMV+EV+ ++G GEGK D+ EG
Sbjct: 9 DDDPDLNRLLNNALESSEDIEVLQELGQLIEARLTDAATFSPTVHRLWENFVTTSLENGAEKKEKDNMAKAKVLHSLGWDLFGALTPWARGEGDGKQS----LEAPSPSFSSSTSSSIISPFLIPLMNAILASHTGRERLIILQEAMSQVPHRTHPSFVPWLIEQMPSAHAMITGPTRVYFIETMCRMWHEQVGKAWEAMEQNGSDGE---------DDMDQDAMDKENVAQMTKLEAHAVLMAVLAAMQNTLTDLPARTEAGKEKLSGLQEEAALSGISAAYVVGLLLSLLARAPPVPPPLPPLSHPMPLAATTDANFDVGSRRSQGEECVWTRHLVVLLAQALSSPWCSFQDLLRHHRGLHEGPGPRPRR---------------EEGRVRGEEGKEGKGGAEGR------PALSPSLTVASTSFAWEPLGLSLATYHLIVHPPSLPAPVVPRVLHPLYLAPLLALPAARLLQNPSNASCGLALLERGPIPILGPSVQGETEMRRGWEGGEGRLHCRARPG-SEASGAGADTENTGRGTPSSEASADEDTWLSLVRGLTACMVFLADDALRQRAYQVLPRVLRLLTYTSQYHCLATALPRAHHPSIQALLISYAQKSFLLATRPNSSPLPASLPPSPWHQLAYLRVFYAPTLSQACQAKPELLVSWASTDSTIQDAAG-----SNEGRLDVLLSALNFYRLLCLKG-WVVDGEEESRWWPALTSLRRKLHDILRKPHQRRNAFRLAMVEEVVDSVIG-TGEGKWDEGEG 737
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G06080.1 ID=NO02G06080.1|Name=NO02G06080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp ATGCAGGCCGATGGCGAGGACGACGACTCCGAGCTGACGGCACTGTTGGA GCAGGCCTTGCTTTCGACTTCGGACAGTAACGCTGGCCAAGCGCTAGGCC AAGTCGTGCAAGCCCGCCTCACCGATGTCAGAGCCGTTCCCTCCATCGTC GCCCGCCTGTGGCACACATTTTTTGCTGGGAACAAAGACGATGATGCTTC GATGAGGGAGTCTGAGAGCAAGGTACTGCATTTCATCGGCTGGGATCTTT TTGAGGCTCTCGTGCCGTGGGCTCGAGGTGGCGATGACTGCAGCAGCAGC AGCAGCGATGCCATGGACTCCTCTTCCGCTTCTCCTTTCTCCTCTACCTC CTCGTCTCCCTCTCCCTTCCTTATCCCTCTCCTTTCCGCCATATTGGGTC TGCATAGCGGGCGGGAACGCTTGCTCATGCTACAGGAGGCCTTGGCGTTA GCTCCACGTCGCACCCACCCTTCATTCGTCCCTTGGCTCGTAGCACAGAT GCCGCCTGCGCTTGCTGTCATTCCTGCTCCGCGACGCAAAAGCTTCCTTG ACTCGATTTGTCGGGTATGGCGGGAAGAAGCTGTCAAGGCGCTGGCTGCG ATGGAGGAGGGAGAGGACGGGGAAAGGGAGGAAGAGGAGGAGGAAGAGAA AGGAGACGTGGAAGAGGAGGAGGATGGGAAGGGAAAGGAACGGCGATTGA CGGGAAAAGAAGCGCAGGCCATTCTTATGTCGGTGCTGGAAGCAGTAGAG GCCTTGGTACCTAGGATTGTAACAAGGAGAGGGCAAATGATGGAAGAGGA GTCGGTGGAGGATGCAGCGGCTGCGGTGGTGGAAATGGGCTACGTGATAG GCGTCCTGCTGGCGCTGCTGCTCATGGCACCGCCCCTCCCTCCACCACCA CCGCCTTCCTCCGCCCTTGGAAAAGTACACATGCACCAGCCATCGAATTC CTTCTGTTTCGCCGAGCGCGTGACTGCCGTCCTCGCCCGGGCCCTTACCT GTACTCACTTGGTCAGCTTCGAGACCCTGCTCCGACATCACCGCGGCCTG AAAGAGCAGCGGAGAACCATTCCTCACACACACTATGTGCAGAGCGGCGC CCGAAACACAAGTATAAATGAGACGGATGAATACAACGACAACATCACCG ACGAGAAAGACGGCGTGAGCAGAGAAAGAAAGCGGTTTACTGCAATTGAG GTTGGTCCTCTCATTCCTGCTTCTGCCGTGGCCTCCACCCCCTTTGCCTG GGAACCTGCAGGCCTGAGCCTCGCAGCCTATCACCTTTTTATCCATCCCC CCTCCCTCCCTGTATCCCTGCTTCCTCGAGTGCTGGCCAGTGCCTACGTC GGGCAGCTGCTGGCGGTGCCTGCCGCGTTTCTACTGCAGAAGCCTCAGGC CGCGCCTTGTGGCCTTGCTCTATTGGAAAGAGGGACACTTGCATCATTCC CCTCGCAAGGAGGGGAAAGGGGAAGAGTAAAAAGGGGAGGGGAAGGTGTT TTGGAGTGCCGGGCGCTTGGTGGCGGTAGTAGTAGAAGTGACCGCAACGA GGGAGGGAAGGAAGAAGGAGGAGCAACAGAAGACAGGGAAGAAGAAGACA CATGGGCAAGCCTGATAAAGGGCCTGACGGGATGCATGGTCTTCCTCGCT GACGACACCATCCGACAACGGGCGTATCTCGCCCTCCCTCGCGTCCTCGC TCTATTGACCTACCGCAGCCGTTACTTCTGTCTGGCGGCCGCCCTCCCTC GCTCCCACCACCCCACGATCCAAGCCCTCCTCATCTCGCAAGCCCAGAAG ACCTTGCTCCTCGCCACTACTCCCACCACCTCCACTCCTTCCTCCTTCCC GCCCTCGCCTTGGCATGACCTGACGCGGCTGCGAGTGTTCTACGCCCCTG TCCTTTCGAGGACATGCGCAGCCAAGCCAGAAGTCCTTGTCTCCTGGGCT GCTGCCACCACCACCAGCAGAAGCAGCAGCGGCGGCGGGGCAGCGACCGG GACAGAAGGACAGCTTGATGCCTTATTGTCTGCTTTGAACTTCCTCCGTT TCCTGCGGCTCAAGGGTCGGTTTGAGGAAGGGGGGGAGGAGGAGGGGGAG TGGTGGCCGAAGCTGCGGGAGCTGCAAGGGAGGGTGAGAGAAATCTTGAG CAAGCCTCACCAGCAGCGGAATGCCTTCAGACTGGCAATGGTGGACGAGG TGCTGGCGATCTTGCTTGGGAAAGATGGAGAGGGAAAGGAGGATAAGAAG GAGGGAACGGGGATGAGGGAGGTCGCGGTTTAA back to topprotein sequence of NO02G06080.1 >NO02G06080.1-protein ID=NO02G06080.1-protein|Name=NO02G06080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp MQADGEDDDSELTALLEQALLSTSDSNAGQALGQVVQARLTDVRAVPSIV ARLWHTFFAGNKDDDASMRESESKVLHFIGWDLFEALVPWARGGDDCSSS SSDAMDSSSASPFSSTSSSPSPFLIPLLSAILGLHSGRERLLMLQEALAL APRRTHPSFVPWLVAQMPPALAVIPAPRRKSFLDSICRVWREEAVKALAA MEEGEDGEREEEEEEEKGDVEEEEDGKGKERRLTGKEAQAILMSVLEAVE ALVPRIVTRRGQMMEEESVEDAAAAVVEMGYVIGVLLALLLMAPPLPPPP PPSSALGKVHMHQPSNSFCFAERVTAVLARALTCTHLVSFETLLRHHRGL KEQRRTIPHTHYVQSGARNTSINETDEYNDNITDEKDGVSRERKRFTAIE VGPLIPASAVASTPFAWEPAGLSLAAYHLFIHPPSLPVSLLPRVLASAYV GQLLAVPAAFLLQKPQAAPCGLALLERGTLASFPSQGGERGRVKRGGEGV LECRALGGGSSRSDRNEGGKEEGGATEDREEEDTWASLIKGLTGCMVFLA DDTIRQRAYLALPRVLALLTYRSRYFCLAAALPRSHHPTIQALLISQAQK TLLLATTPTTSTPSSFPPSPWHDLTRLRVFYAPVLSRTCAAKPEVLVSWA AATTTSRSSSGGGAATGTEGQLDALLSALNFLRFLRLKGRFEEGGEEEGE WWPKLRELQGRVREILSKPHQQRNAFRLAMVDEVLAILLGKDGEGKEDKK EGTGMREVAV* back to topmRNA from alignment at chr2:1625902..1628184+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G06080.1 ID=NO02G06080.1|Name=NO02G06080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at chr2:1625902..1628184+ (Nannochloropsis oceanica) ATGCAGGCCGATGGCGAGGACGACGACTCCGAGCTGACGGCACTGTTGGA
GCAGGCCTTGCTTTCGACTTCGGACAGTAACGCTGGCCAAGCGCTAGGCC
AAGTCGTGCAAGCCCGCCTCACCGATGTCAGAGCCGTTCCCTCCATCGTC
GCCCGCCTGTGGCACACATTTTTTGCTGGGAACAAAGACGATGATGCTTC
GATGAGGGAGTCTGAGAGCAAGGTACTGCATTTCATCGGCTGGGATCTTT
TTGAGGCTCTCGTGCCGTGGGCTCGAGGTGGCGATGACTGCAGCAGCAGC
AGCAGCGATGCCATGGACTCCTCTTCCGCTTCTCCTTTCTCCTCTACCTC
CTCGTCTCCCTCTCCCTTCCTTATCCCTCTCCTTTCCGCCATATTGGGTC
TGCATAGCGGGCGGGAACGCTTGCTCATGCTACAGGAGGCCTTGGCGTTA
GCTCCACGTCGCACCCACCCTTCATTCGTCCCTTGGCTCGTAGCACAGAT
GCCGCCTGCGCTTGCTGTCATTCCTGCTCCGCGACGCAAAAGCTTCCTTG
ACTCGATTTGTCGGGTATGGCGGGAAGAAGCTGTCAAGGCGCTGGCTGCG
ATGGAGGAGGGAGAGGACGGGGAAAGGGAGGAAGAGGAGGAGGAAGAGAA
AGGAGACGTGGAAGAGGAGGAGGATGGGAAGGGAAAGGAACGGCGATTGA
CGGGAAAAGAAGCGCAGGCCATTCTTATGTCGGTGCTGGAAGCAGTAGAG
GCCTTGGTACCTAGGATTGTAACAAGGAGAGGGCAAATGATGGAAGAGGA
GTCGGTGGAGGATGCAGCGGCTGCGGTGGTGGAAATGGGCTACGTGATAG
GCGTCCTGCTGGCGCTGCTGCTCATGGCACCGCCCCTCCCTCCACCACCA
CCGCCTTCCTCCGCCCTTGGAAAAGTACACATGCACCAGCCATCGAATTC
CTTCTGTTTCGCCGAGCGCGTGACTGCCGTCCTCGCCCGGGCCCTTACCT
GTACTCACTTGGTCAGCTTCGAGACCCTGCTCCGACATCACCGCGGCCTG
AAAGAGCAGCGGAGAACCATTCCTCACACACACTATGTGCAGAGCGGCGC
CCGAAACACAAGTATAAATGAGACGGATGAATACAACGACAACATCACCG
ACGAGAAAGACGGCGTGAGCAGAGAAAGAAAGCGGTTTACTGCAATTGAG
GTTGGTCCTCTCATTCCTGCTTCTGCCGTGGCCTCCACCCCCTTTGCCTG
GGAACCTGCAGGCCTGAGCCTCGCAGCCTATCACCTTTTTATCCATCCCC
CCTCCCTCCCTGTATCCCTGCTTCCTCGAGTGCTGGCCAGTGCCTACGTC
GGGCAGCTGCTGGCGGTGCCTGCCGCGTTTCTACTGCAGAAGCCTCAGGC
CGCGCCTTGTGGCCTTGCTCTATTGGAAAGAGGGACACTTGCATCATTCC
CCTCGCAAGGAGGGGAAAGGGGAAGAGTAAAAAGGGGAGGGGAAGGTGTT
TTGGAGTGCCGGGCGCTTGGTGGCGGTAGTAGTAGAAGTGACCGCAACGA
GGGAGGGAAGGAAGAAGGAGGAGCAACAGAAGACAGGGAAGAAGAAGACA
CATGGGCAAGCCTGATAAAGGGCCTGACGGGATGCATGGTCTTCCTCGCT
GACGACACCATCCGACAACGGGCGTATCTCGCCCTCCCTCGCGTCCTCGC
TCTATTGACCTACCGCAGCCGTTACTTCTGTCTGGCGGCCGCCCTCCCTC
GCTCCCACCACCCCACGATCCAAGCCCTCCTCATCTCGCAAGCCCAGAAG
ACCTTGCTCCTCGCCACTACTCCCACCACCTCCACTCCTTCCTCCTTCCC
GCCCTCGCCTTGGCATGACCTGACGCGGCTGCGAGTGTTCTACGCCCCTG
TCCTTTCGAGGACATGCGCAGCCAAGCCAGAAGTCCTTGTCTCCTGGGCT
GCTGCCACCACCACCAGCAGAAGCAGCAGCGGCGGCGGGGCAGCGACCGG
GACAGAAGGACAGCTTGATGCCTTATTGTCTGCTTTGAACTTCCTCCGTT
TCCTGCGGCTCAAGGGTCGGTTTGAGGAAGGGGGGGAGGAGGAGGGGGAG
TGGTGGCCGAAGCTGCGGGAGCTGCAAGGGAGGGTGAGAGAAATCTTGAG
CAAGCCTCACCAGCAGCGGAATGCCTTCAGACTGGCAATGGTGGACGAGG
TGCTGGCGATCTTGCTTGGGAAAGATGGAGAGGGAAAGGAGGATAAGAAG
GAGGGAACGGGGATGAGGGAGGTCGCGGTTTAA back to topCoding sequence (CDS) from alignment at chr2:1625902..1628184+ >NO02G06080.1 ID=NO02G06080.1|Name=NO02G06080.1|organism=Nannochloropsis oceanica|type=CDS|length=2283bp|location=Sequence derived from alignment at chr2:1625902..1628184+ (Nannochloropsis oceanica) ATGCAGGCCGATGGCGAGGACGACGACTCCGAGCTGACGGCACTGTTGGA GCAGGCCTTGCTTTCGACTTCGGACAGTAACGCTGGCCAAGCGCTAGGCC AAGTCGTGCAAGCCCGCCTCACCGATGTCAGAGCCGTTCCCTCCATCGTC GCCCGCCTGTGGCACACATTTTTTGCTGGGAACAAAGACGATGATGCTTC GATGAGGGAGTCTGAGAGCAAGGTACTGCATTTCATCGGCTGGGATCTTT TTGAGGCTCTCGTGCCGTGGGCTCGAGGTGGCGATGACTGCAGCAGCAGC AGCAGCGATGCCATGGACTCCTCTTCCGCTTCTCCTTTCTCCTCTACCTC CTCGTCTCCCTCTCCCTTCCTTATCCCTCTCCTTTCCGCCATATTGGGTC TGCATAGCGGGCGGGAACGCTTGCTCATGCTACAGGAGGCCTTGGCGTTA GCTCCACGTCGCACCCACCCTTCATTCGTCCCTTGGCTCGTAGCACAGAT GCCGCCTGCGCTTGCTGTCATTCCTGCTCCGCGACGCAAAAGCTTCCTTG ACTCGATTTGTCGGGTATGGCGGGAAGAAGCTGTCAAGGCGCTGGCTGCG ATGGAGGAGGGAGAGGACGGGGAAAGGGAGGAAGAGGAGGAGGAAGAGAA AGGAGACGTGGAAGAGGAGGAGGATGGGAAGGGAAAGGAACGGCGATTGA CGGGAAAAGAAGCGCAGGCCATTCTTATGTCGGTGCTGGAAGCAGTAGAG GCCTTGGTACCTAGGATTGTAACAAGGAGAGGGCAAATGATGGAAGAGGA GTCGGTGGAGGATGCAGCGGCTGCGGTGGTGGAAATGGGCTACGTGATAG GCGTCCTGCTGGCGCTGCTGCTCATGGCACCGCCCCTCCCTCCACCACCA CCGCCTTCCTCCGCCCTTGGAAAAGTACACATGCACCAGCCATCGAATTC CTTCTGTTTCGCCGAGCGCGTGACTGCCGTCCTCGCCCGGGCCCTTACCT GTACTCACTTGGTCAGCTTCGAGACCCTGCTCCGACATCACCGCGGCCTG AAAGAGCAGCGGAGAACCATTCCTCACACACACTATGTGCAGAGCGGCGC CCGAAACACAAGTATAAATGAGACGGATGAATACAACGACAACATCACCG ACGAGAAAGACGGCGTGAGCAGAGAAAGAAAGCGGTTTACTGCAATTGAG GTTGGTCCTCTCATTCCTGCTTCTGCCGTGGCCTCCACCCCCTTTGCCTG GGAACCTGCAGGCCTGAGCCTCGCAGCCTATCACCTTTTTATCCATCCCC CCTCCCTCCCTGTATCCCTGCTTCCTCGAGTGCTGGCCAGTGCCTACGTC GGGCAGCTGCTGGCGGTGCCTGCCGCGTTTCTACTGCAGAAGCCTCAGGC CGCGCCTTGTGGCCTTGCTCTATTGGAAAGAGGGACACTTGCATCATTCC CCTCGCAAGGAGGGGAAAGGGGAAGAGTAAAAAGGGGAGGGGAAGGTGTT TTGGAGTGCCGGGCGCTTGGTGGCGGTAGTAGTAGAAGTGACCGCAACGA GGGAGGGAAGGAAGAAGGAGGAGCAACAGAAGACAGGGAAGAAGAAGACA CATGGGCAAGCCTGATAAAGGGCCTGACGGGATGCATGGTCTTCCTCGCT GACGACACCATCCGACAACGGGCGTATCTCGCCCTCCCTCGCGTCCTCGC TCTATTGACCTACCGCAGCCGTTACTTCTGTCTGGCGGCCGCCCTCCCTC GCTCCCACCACCCCACGATCCAAGCCCTCCTCATCTCGCAAGCCCAGAAG ACCTTGCTCCTCGCCACTACTCCCACCACCTCCACTCCTTCCTCCTTCCC GCCCTCGCCTTGGCATGACCTGACGCGGCTGCGAGTGTTCTACGCCCCTG TCCTTTCGAGGACATGCGCAGCCAAGCCAGAAGTCCTTGTCTCCTGGGCT GCTGCCACCACCACCAGCAGAAGCAGCAGCGGCGGCGGGGCAGCGACCGG GACAGAAGGACAGCTTGATGCCTTATTGTCTGCTTTGAACTTCCTCCGTT TCCTGCGGCTCAAGGGTCGGTTTGAGGAAGGGGGGGAGGAGGAGGGGGAG TGGTGGCCGAAGCTGCGGGAGCTGCAAGGGAGGGTGAGAGAAATCTTGAG CAAGCCTCACCAGCAGCGGAATGCCTTCAGACTGGCAATGGTGGACGAGG TGCTGGCGATCTTGCTTGGGAAAGATGGAGAGGGAAAGGAGGATAAGAAG GAGGGAACGGGGATGAGGGAGGTCGCGGTTTAA back to top
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