NO02G05940.1, NO02G05940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05940.1
Unique NameNO02G05940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1277
Alignment locationchr2:1584068..1585559 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1584068..1585559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05940.1 vs.
Match: EWM30063.1 (protein of unknown function DUF4149 [Nannochloropsis gaditana])

HSP 1 Score: 330.9 bits (847), Expect = 3.100e-87
Identity = 169/221 (76.47%), Postives = 191/221 (86.43%), Query Frame = 0 
Query:    1 MATYHSLVIMASACLLVFLGSTIEATSTTHPYASFIHLASVGAWFGISLWVTFVAGVLLYRYLPRHLFGEVQSKIFPYFFGMSLVFTSLALASWAHLEGVTDLLATAKNGGEDATVLFVLGGAAMLSALQLVVLGPSVTKAMNARNKLEKEEGFADTTSKEGRSPQLLALGKKFARVHGMSSTANLLIFLAAIMHLYVLSSKHVTFAIMAPAV-KASFWGW 221
            MATYH+LV++ASAC+L+FLG+T EATSTTHPYASFIHLASVGAWFGIS WVTFVAGVLL++YLPRH FG VQ KIFPY+F +SLV TSLALASW HLEG  DLLA  K+G ED  V+  LGGAA+LSALQL+VLGP VTKAM ARNK EKEEGFADTTSK GRSP+LL LG +FAR+HG+SSTANLL+FL A+  LYVLS+KHVTFA MAP V KA+FW W
Sbjct:    1 MATYHALVVLASACMLIFLGTTTEATSTTHPYASFIHLASVGAWFGISFWVTFVAGVLLFKYLPRHQFGSVQGKIFPYYFALSLVLTSLALASWVHLEGGLDLLAAIKSGNEDGKVVACLGGAALLSALQLLVLGPCVTKAMEARNKKEKEEGFADTTSKVGRSPELLQLGAEFARMHGLSSTANLLVFLGALFQLYVLSAKHVTFATMAPTVAKATFWPW 221
The following BLAST results are available for this feature:
BLAST of NO02G05940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30063.13.100e-8776.47protein of unknown function DUF4149 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05940NO02G05940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05940.1NO02G05940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05940.1.cds1NO02G05940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05940.1.cds2NO02G05940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05940.1 ID=NO02G05940.1|Name=NO02G05940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp
TTTAAAACGAAGATGATGTCTTAAGACCTCTCCTTTGTCAACCAGGAAAA
TGGCGGGAGCAGAGGCAGGACAAGCAGCACTGCAACGACGACAAAAAAAT
GTACCTCTCAAGCTCCCTTTTGTTTGTATGCCACAGCTGGTAAACCCAGC
CCTCAGTAGAGGCCGTTGCAACGTGCGAGTAGACGGGCGAATCAGCGATT
GCTTGATTCCAAAATTCCCTTTTGTTCTGATTTCCCTGAGACACTCTAAA
CTCTCCCTTGTCCCACCATTGCAGGCACACCCAGGCTCCTCACGCACACC
CCCCGCACGCATTTCAAATGGCAACCTACCATTCGCTGGTGATCATGGCG
TCTGCCTGTCTCCTCGTCTTCTTGGGTTCGACGATTGAGGCCACGAGCAC
TACTCATCCGTACGCCTCCTTTATTCATTTGGCCAGTGTCGGGGCCTGGT
TTGGAATCTCGCTCTGGGTAACGTTTGTCGCTGGCGTTTTGCTGTACAGG
TATCTGCCCCGGCACCTCTTTGGAGAAGTGCAGAGCAAGATCTTTCCCTA
TTTCTTCGGCATGTCCTTGGTCTTCACTTCTCTTGCCCTGGCCTCGTGGG
CACATTTGGAAGGGGTCACCGACCTCTTGGCCACCGCCAAGAATGGGGGC
GAAGACGCGACCGTTCTTTTTGTCCTAGGCGGCGCCGCCATGCTTTCTGC
GCTGCAGCTCGTAGTACTGGGCCCGTCGGTGACCAAGGCCATGAATGCGC
GTAACAAACTGGAGAAGGAAGAGGGTTTCGCCGACACGACCAGCAAGGAA
GGAAGGAGCCCTCAGCTGCTTGCCTTGGGCAAGAAATTTGCACGCGTCCA
CGGGATGTCGTCAACCGCTAATCTGCTTATTTTCCTGGCAGCAATTATGC
ATCTCTATGTCCTGTCGTCCAAGCATGTCACGTTTGCGATTATGGCGCCA
GCAGTCAAGGCCAGCTTTTGGGGATGGTAATGCGGGGTGTGGTGTGGAGA
TATGGGAATCAAGAGACGGGCTGTGCAGCGGGAGCTGGTGCGAATTTGCG
TGTGAACATTCTGCATGTTTGTGAATGCACATGTGAGAAAACGCAACCAA
GGGAGTGAATAATGTGGTTTAATGAATGTCAAAAAGAAAAACAACAAGCA
AGCACATGAGCTTAAGCATGAATGTGGTGAACGGCTGGGCACACAAGGGC
AAGACAAGAAAGATAATCGAAGAAGATTAAGCGAAAAGCCCAGAGATGAA
TTAAGAACATAACATTTTTATTACGAG
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protein sequence of NO02G05940.1

>NO02G05940.1-protein ID=NO02G05940.1-protein|Name=NO02G05940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MATYHSLVIMASACLLVFLGSTIEATSTTHPYASFIHLASVGAWFGISLW
VTFVAGVLLYRYLPRHLFGEVQSKIFPYFFGMSLVFTSLALASWAHLEGV
TDLLATAKNGGEDATVLFVLGGAAMLSALQLVVLGPSVTKAMNARNKLEK
EEGFADTTSKEGRSPQLLALGKKFARVHGMSSTANLLIFLAAIMHLYVLS
SKHVTFAIMAPAVKASFWGW*
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mRNA from alignment at chr2:1584068..1585559+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05940.1 ID=NO02G05940.1|Name=NO02G05940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr2:1584068..1585559+ (Nannochloropsis oceanica)
TTTAAAACGAAGATGATGTCTTAAGACCTCTCCTTTGTCAACCAGGAAAA
TGGCGGGAGCAGAGGCAGGACAAGCAGCACTGCAACGACGACAAAAAAAT
GTACCTCTCAAGCTCCCTTTTGTTTGTATGCCACAGCTGGTAAACCCAGC
CCTCAGTAGAGGCCGTTGCAACGTGCGAGTAGACGGGCGAATCAGCGATT
GCTTGATTCCAAAATTCCCTTTTGTTCTGATTTCCCTGAGACACTCTAAA
CTCTCCCTTGTCCCACCATTGCAGGCACACCCAGGCTCCTCACGCACACC
CCCCGCACGCATTTCAAATGGCAACCTACCATTCGCTGGTGATCATGGCG
TCTGCCTGTCTCCTCGTCTTCTTGGGTTCGACGATTGAGGCCACGAGCAC
TACTCATCCGTACGCCTCCTTTATTCATTTGGCCAGTGTCGGGGCCTGGT
TTGGAATCTCGCTCTGGGTAACGTTTGTCGCTGGCGTTTTGCTGTACAGG
TATCTGCCCCGGCACCTCTTTGGAGAAGTGCAGAGCAAGATCTTTCCCTA
TTTCTTCGGCATGTCCTTGGTCTTCACTTCTCTTGCCCTGGCCTCGTGGG
CACATTTGGAAGGGGTCACCGACCTCTTGGCCACCGCCAAGAATGGGGGC
GAAGACGCGACCGTTCTTTTTGTCCTAGGCGGCGCCGCCATGCTTTCTGC
GCTGCAGCTCGTAGTACTGGGCCCGTCGGTGACCAAGGCCATGAATGCGC
GTAACAAACTGGAGAAGGTACATACCCATCTACATGTAAAGGAGTTATAT
TGATTTTTGGGCCATCATCAGATGGTATATGGTGCGCTCGATTCTCCACG
CTAAAAATTAGGAGGCGTATGGACATGGCTGTCATTACCATAGACAAGAT
TGGATTACTAACACTCCTATTGGTACTCACGCACGAATCTCCCTTCTCAC
TCCCTTAATCCCTTTTCACGTCTCTACCACAGGAAGAGGGTTTCGCCGAC
ACGACCAGCAAGGAAGGAAGGAGCCCTCAGCTGCTTGCCTTGGGCAAGAA
ATTTGCACGCGTCCACGGGATGTCGTCAACCGCTAATCTGCTTATTTTCC
TGGCAGCAATTATGCATCTCTATGTCCTGTCGTCCAAGCATGTCACGTTT
GCGATTATGGCGCCAGCAGTCAAGGCCAGCTTTTGGGGATGGTAATGCGG
GGTGTGGTGTGGAGATATGGGAATCAAGAGACGGGCTGTGCAGCGGGAGC
TGGTGCGAATTTGCGTGTGAACATTCTGCATGTTTGTGAATGCACATGTG
AGAAAACGCAACCAAGGGAGTGAATAATGTGGTTTAATGAATGTCAAAAA
GAAAAACAACAAGCAAGCACATGAGCTTAAGCATGAATGTGGTGAACGGC
TGGGCACACAAGGGCAAGACAAGAAAGATAATCGAAGAAGATTAAGCGAA
AAGCCCAGAGATGAATTAAGAACATAACATTTTTATTACGAG
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Coding sequence (CDS) from alignment at chr2:1584068..1585559+

>NO02G05940.1 ID=NO02G05940.1|Name=NO02G05940.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr2:1584068..1585559+ (Nannochloropsis oceanica)
ATGGCAACCTACCATTCGCTGGTGATCATGGCGTCTGCCTGTCTCCTCGT
CTTCTTGGGTTCGACGATTGAGGCCACGAGCACTACTCATCCGTACGCCT
CCTTTATTCATTTGGCCAGTGTCGGGGCCTGGTTTGGAATCTCGCTCTGG
GTAACGTTTGTCGCTGGCGTTTTGCTGTACAGGTATCTGCCCCGGCACCT
CTTTGGAGAAGTGCAGAGCAAGATCTTTCCCTATTTCTTCGGCATGTCCT
TGGTCTTCACTTCTCTTGCCCTGGCCTCGTGGGCACATTTGGAAGGGGTC
ACCGACCTCTTGGCCACCGCCAAGAATGGGGGCGAAGACGCGACCGTTCT
TTTTGTCCTAGGCGGCGCCGCCATGCTTTCTGCGCTGCAGCTCGTAGTAC
TGGGCCCGTCGGTGACCAAGGCCATGAATGCGCGTAACAAACTGGAGAAG
GAAGAGGGTTTCGCCGACACGACCAGCAAGGAAGGAAGGAGCCCTCAGCT
GCTTGCCTTGGGCAAGAAATTTGCACGCGTCCACGGGATGTCGTCAACCG
CTAATCTGCTTATTTTCCTGGCAGCAATTATGCATCTCTATGTCCTGTCG
TCCAAGCATGTCACGTTTGCGATTATGGCGCCAGCAGTCAAGGCCAGCTT
TTGGGGATGGTAA
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Synonyms
Publications