NO02G05900.1, NO02G05900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05900.1
Unique NameNO02G05900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr2:1573800..1575189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1573800..1575189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05900.1 vs.
Match: XP_005854853.1 (hypothetical protein NGA_0419200 [Nannochloropsis gaditana CCMP526]; EKU21507.1 hypothetical protein NGA_0419200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 495.4 bits (1274), Expect = 1.400e-136
Identity = 243/318 (76.42%), Postives = 270/318 (84.91%), Query Frame = 0 
Query:    1 MSRQQQEQLQDHHHHRHHHPAAHTIDPNAPPDQPSVQIYFFSGNPYVYALYDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHIASDVQQQIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASIYLFPFLSEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVSSPAKRRNLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGSKPYLVYTEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETVLDIVGRVVRGEESEGGVKE-RAKL 318
            M ++QQEQ ++H  H  H PAA T +P +  +  SVQIYFFSGNPYVYALYDNLLSLL+ RG  KG RISTLLVTYP LPD  LADPQAAFA+IA DV QQIW +ERAR SPSP+HTLLVGHSFGAYIANLLLPHLTP P ASIYLFPFLSEP+WRGKLQLALADQAYR+TP LG A+HG+T+ LFDW+L F+SSP KR++L    DP TL AILRVAACERAEIGGKGPDLSHVDMHGE+HGS PYLVYTEGDEWSPRYVWDAWPEERRVDMSH+PHAFPC EAHDEEVCETVL IVG+VV G E +  + + RA+L
Sbjct:    1 MPQKQQEQRKEHDQHLDH-PAADTGEPKSTAEDHSVQIYFFSGNPYVYALYDNLLSLLRIRGHAKGRRISTLLVTYPSLPDFFLADPQAAFAYIAKDVHQQIWAHERARHSPSPTHTLLVGHSFGAYIANLLLPHLTPVPIASIYLFPFLSEPSWRGKLQLALADQAYRRTPFLGSAVHGVTSCLFDWVLRFISSPFKRQSLGGGIDPETLRAILRVAACERAEIGGKGPDLSHVDMHGERHGSMPYLVYTEGDEWSPRYVWDAWPEERRVDMSHVPHAFPCHEAHDEEVCETVLQIVGKVVGGHEGKEALTDTRARL 317
The following BLAST results are available for this feature:
BLAST of NO02G05900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854853.11.400e-13676.42hypothetical protein NGA_0419200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05900NO02G05900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05900.1NO02G05900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05900.1.cds1NO02G05900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05900.1.cds2NO02G05900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05900.1.cds3NO02G05900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05900.1 ID=NO02G05900.1|Name=NO02G05900.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGTCGCGACAGCAGCAGGAACAGCTGCAAGACCACCACCACCACCGCCA
TCATCACCCCGCGGCGCACACGATCGACCCCAACGCACCTCCGGACCAAC
CCAGCGTCCAGATATACTTCTTCTCCGGGAACCCATACGTGTACGCACTG
TACGACAACCTTCTGTCCCTCCTTCAAACCCGAGGACAAACCAAAGGTCA
TCGCATCTCCACCCTCCTCGTCACCTACCCCCCACTCCCCGACGCCCTGC
TTGCCGATCCCCAAGCCGCCTTTGCACACATCGCCAGCGACGTACAGCAG
CAAATCTGGACCTACGAACGCGCGCGTCCCTCTCCCTCACCTTCTCACAC
CCTCTTGGTCGGGCACTCTTTCGGGGCCTACATCGCCAACCTCCTCCTCC
CCCACCTGACGCCGTCCCCCGCCGCCTCCATCTACCTCTTCCCCTTCCTC
TCCGAACCGACCTGGCGAGGCAAACTTCAACTTGCGCTCGCGGATCAGGC
CTACCGCCAAACGCCCCTCCTAGGCCGGGCCCTTCATGGGATGACCACTC
GGCTCTTCGATTGGCTCCTTTACTTCGTTTCCTCCCCAGCCAAGCGGCGT
AACCTCCCCCCACGCACGGACCCAGCCACGCTCCACGCCATCTTGCGGGT
CGCGGCGTGTGAGCGGGCGGAAATTGGGGGAAAAGGGCCGGACTTATCGC
ATGTCGACATGCACGGGGAGAAGCACGGGAGCAAGCCGTATTTGGTGTAC
ACGGAGGGGGACGAGTGGAGCCCGAGATACGTCTGGGACGCCTGGCCGGA
GGAAAGGAGGGTGGATATGAGTCACATCCCTCATGCCTTCCCGTGCCAGG
AGGCGCACGACGAGGAGGTGTGTGAAACCGTGCTGGACATCGTGGGGAGG
GTGGTGAGGGGGGAGGAGAGTGAAGGCGGCGTGAAGGAGAGGGCCAAGTT
GTAG
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protein sequence of NO02G05900.1

>NO02G05900.1-protein ID=NO02G05900.1-protein|Name=NO02G05900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MSRQQQEQLQDHHHHRHHHPAAHTIDPNAPPDQPSVQIYFFSGNPYVYAL
YDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHIASDVQQ
QIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASIYLFPFL
SEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVSSPAKRR
NLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGSKPYLVY
TEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETVLDIVGR
VVRGEESEGGVKERAKL*
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mRNA from alignment at chr2:1573800..1575189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05900.1 ID=NO02G05900.1|Name=NO02G05900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at chr2:1573800..1575189+ (Nannochloropsis oceanica)
ATGTCGCGACAGCAGCAGGAACAGCTGCAAGACCACCACCACCACCGCCA
TCATCACCCCGCGGCGCACACGATCGACCCCAACGCACCTCCGGACCAAC
CCAGCGTCCAGATATACTTCTTCTCCGGGAACCCATGTAAGAGATATGGA
TAGAGGAGGGAGAATGGCATGGATGAAGAGGAAATTGTATGCCTTCTAGC
CAATATACAGAGGCACTTGTCTGTCATTCTCTTTCTCACACGCCCCTCCC
TTCCCTCCCCACCGATCTCCCCGTCATACCGCGCTCCCGATTCCCCTCCC
GCCCTTTCCCACACGGACTCAGACGTGTACGCACTGTACGACAACCTTCT
GTCCCTCCTTCAAACCCGAGGACAAACCAAAGGTCATCGCATCTCCACCC
TCCTCGTCACCTACCCCCCACTCCCCGACGCCCTGCTTGCCGATCCCCAA
GCCGCCTTTGCACACATCGCCAGCGACGTACAGCAGCAAATCTGGACCTA
CGAACGCGCGCGTCCCTCTCCCTCACCTTCTCACACCCTCTTGGTCGGGC
ACTCTTTCGGGGCCTACATCGCCAACCTCCTCCTCCCCCACCTGACGCCG
TCCCCCGCCGCCTCCATCTACCTCTTCCCCTTCCTCTCCGAACCGACCTG
GCGAGGCAAACTTCAACTTGCGCTCGCGGATCAGGCCTACCGCCAAACGC
CCCTCCTAGGCCGGGCCCTTCATGGGATGACCACTCGGCTCTTCGATTGG
CTCCTTTACTTCGTTTCCTCCCCAGCCAAGCGGCGTAACCTCCCCCCACG
CACGGACCCAGCCACGCTCCACGCCATCTTGCGGGTCGCGGCGTGTGAGC
GGGCGGAAATTGGGGGAAAAGGGCCGGACTTATCGCATGTCGACATGCAC
GGGGAGAAGCACGGGAGCAAGCCGTATTTGGTGTACACGGAGGGGGACGA
GTGGAGGTGGGTGTGGGAGGGAGGGAGGAAGGGATGGAGGGAGGGAGGGA
GGGAGGAAGGGGTATGTAGACCCGGGTCAATGAGGCGTAGTTCTGCAGGA
GACAGGTGAACAGTCTTTCCTTCAACATCTTCCCCCCGTGTCTTATTGCC
TCCCGCCGGGGCAGGTAACATCGCTCGTTCTCCTTGCATTGCCTTGTCCT
CCATGCCACACTCACTCACCTATATTACCGGCTGACCGCCCCCCCCCCCC
CCACAGCCCGAGATACGTCTGGGACGCCTGGCCGGAGGAAAGGAGGGTGG
ATATGAGTCACATCCCTCATGCCTTCCCGTGCCAGGAGGCGCACGACGAG
GAGGTGTGTGAAACCGTGCTGGACATCGTGGGGAGGGTGGTGAGGGGGGA
GGAGAGTGAAGGCGGCGTGAAGGAGAGGGCCAAGTTGTAG
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Coding sequence (CDS) from alignment at chr2:1573800..1575189+

>NO02G05900.1 ID=NO02G05900.1|Name=NO02G05900.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr2:1573800..1575189+ (Nannochloropsis oceanica)
ATGTCGCGACAGCAGCAGGAACAGCTGCAAGACCACCACCACCACCGCCA
TCATCACCCCGCGGCGCACACGATCGACCCCAACGCACCTCCGGACCAAC
CCAGCGTCCAGATATACTTCTTCTCCGGGAACCCATACGTGTACGCACTG
TACGACAACCTTCTGTCCCTCCTTCAAACCCGAGGACAAACCAAAGGTCA
TCGCATCTCCACCCTCCTCGTCACCTACCCCCCACTCCCCGACGCCCTGC
TTGCCGATCCCCAAGCCGCCTTTGCACACATCGCCAGCGACGTACAGCAG
CAAATCTGGACCTACGAACGCGCGCGTCCCTCTCCCTCACCTTCTCACAC
CCTCTTGGTCGGGCACTCTTTCGGGGCCTACATCGCCAACCTCCTCCTCC
CCCACCTGACGCCGTCCCCCGCCGCCTCCATCTACCTCTTCCCCTTCCTC
TCCGAACCGACCTGGCGAGGCAAACTTCAACTTGCGCTCGCGGATCAGGC
CTACCGCCAAACGCCCCTCCTAGGCCGGGCCCTTCATGGGATGACCACTC
GGCTCTTCGATTGGCTCCTTTACTTCGTTTCCTCCCCAGCCAAGCGGCGT
AACCTCCCCCCACGCACGGACCCAGCCACGCTCCACGCCATCTTGCGGGT
CGCGGCGTGTGAGCGGGCGGAAATTGGGGGAAAAGGGCCGGACTTATCGC
ATGTCGACATGCACGGGGAGAAGCACGGGAGCAAGCCGTATTTGGTGTAC
ACGGAGGGGGACGAGTGGAGCCCGAGATACGTCTGGGACGCCTGGCCGGA
GGAAAGGAGGGTGGATATGAGTCACATCCCTCATGCCTTCCCGTGCCAGG
AGGCGCACGACGAGGAGGTGTGTGAAACCGTGCTGGACATCGTGGGGAGG
GTGGTGAGGGGGGAGGAGAGTGAAGGCGGCGTGAAGGAGAGGGCCAAGTT
GTAG
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Synonyms
Publications