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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1471933..1474446 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05530.1 vs.
Match: EWM30144.1 (hypothetical protein Naga_100115g2 [Nannochloropsis gaditana]) HSP 1 Score: 491.1 bits (1263), Expect = 6.800e-135 Identity = 266/450 (59.11%), Postives = 329/450 (73.11%), Query Frame = 0
Query: 23 VGVFASALAVGLGFTPLHLFYLHLRGMNRRRNLLACFLENIIAYHLLLLLLRQALYAVPATTRKQQRRQLLVLLVAAAAVFCHAFIVAAQVSAVALMGSRMNGDLIYNAVWAVKTNSWGETDAKYFFPFVLPATLAIDMAWLFWGLKLSCGGNGGILDYDEDNAEVKAALKRKAAALGRDCSVKSLCLTFGIVGLLRYGLLWRGYSPVANTVYSLAQYSQMTGPSNLKRSK-----LPRRLPPHSQAHKRYSYNYTALSDLAAAYAAAAETTRVASSDTHGQQQKKKDKPNVVLIINDSFGNALLKTKKGLKAFPFYEETVQQHRDIFDFTNNRAVSANTNTAATAALLGSYVAAPDRHPDAWTYFDLPNLFTMGKALGYKLALFMPYD--DWYPFTGIYGGRFDKIVSKNTLNGTVANDMGMDDRLITAEVLKFLEEEGVKRGRVKQRQ 466
VG AS VGLGFTPLHL YLHLRG RRRNL AC LEN++AY LL+ +R L+A PA TR+QQRRQ+L ++ AA VF HAFIVAAQV+A+ALMGSRMNGD IYN V+AVKT +W ETDAKYFFP +L ATLAIDM WL++ L + E N + A ++ + + +V L I+GLLR + WRGYSPVANT+YSL QYS+M GPS+LKRS+ +PR+ AHK Y Y+Y +L + A AA A S++ Q QK++ K NV+L++++SFGN+LLKT++GL+AFPFYE VQ+ DI+DFTNNRAVS NT TAA+AAL+GSYVAAPD HPD WT+FDLPNLFT+GKALGY+L LFMPYD DW+PFTGIY RFDKIVS++TL NDMGMDDRL+TAEVLKFLEEEG K+ R ++++
Sbjct: 20 VGRIASVALVGLGFTPLHLLYLHLRGKARRRNLFACLLENVLAYFLLVSSVRHVLHAPPAKTRQQQRRQVLGIISAAILVFAHAFIVAAQVTALALMGSRMNGDFIYNLVYAVKTCTWRETDAKYFFPLMLSATLAIDMVWLWYALLTP----RSVECRTEKNDDTAADKVQEKISARQSSTVNRWYLALSIIGLLRGVVFWRGYSPVANTLYSLVQYSRMKGPSSLKRSQKYGSGIPRK------AHKIYKYDYASLPERVAGNAAEA---LGRSTNEEAQIQKQRKKTNVILLLSESFGNSLLKTEEGLEAFPFYENVVQRDPDIYDFTNNRAVSGNTLTAASAALVGSYVAAPDLHPDTWTFFDLPNLFTLGKALGYRLVLFMPYDHEDWFPFTGIYEDRFDKIVSRSTLGERAVNDMGMDDRLVTAEVLKFLEEEGAKQRRHREKE 456
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05530.1 ID=NO02G05530.1|Name=NO02G05530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp
ATGGCGGCAGCGCTGGGGAGGAGAAGACCACGGCTTGATGGCGCAGCAGC
AAGGGGAAAGCGACTCGTTGGAGTCTTTGCCAGTGCTCTTGCTGTGGGCC
TGGGCTTCACGCCTCTGCATCTTTTTTATCTCCATCTACGCGGCATGAAT
CGGCGCCGCAACTTGCTGGCGTGCTTCTTGGAGAACATCATAGCTTATCA
CCTGCTGCTCCTGCTGCTACGGCAAGCTCTCTACGCCGTACCCGCCACCA
CCCGCAAGCAGCAGCGTCGCCAGCTCCTGGTACTACTCGTGGCCGCGGCG
GCCGTCTTTTGCCATGCCTTCATTGTGGCGGCCCAGGTATCGGCGGTGGC
GCTGATGGGCTCGAGAATGAACGGGGACTTGATCTACAACGCCGTATGGG
CTGTGAAGACAAATTCATGGGGAGAGACGGATGCAAAGTATTTTTTCCCT
TTTGTCCTCCCCGCCACCTTGGCCATTGACATGGCCTGGCTCTTCTGGGG
TCTTAAACTCTCATGTGGCGGGAACGGTGGCATACTAGACTATGACGAGG
ACAATGCAGAGGTCAAGGCCGCGCTAAAGAGAAAAGCTGCGGCGTTGGGT
CGTGACTGTAGTGTGAAATCCTTGTGCTTGACGTTTGGAATTGTGGGCTT
GCTGCGCTACGGCCTGCTGTGGCGGGGCTATTCACCTGTTGCCAACACGG
TTTATTCACTTGCGCAATACAGTCAAATGACAGGACCCTCTAACTTAAAG
CGAAGCAAGCTTCCGAGAAGATTGCCGCCACACTCACAAGCACACAAGCG
ATATTCCTACAATTATACAGCCCTCTCTGATCTCGCTGCTGCATACGCCG
CGGCCGCTGAGACCACGCGGGTTGCCAGCAGCGACACCCACGGACAGCAG
CAGAAGAAGAAGGACAAGCCCAATGTGGTTCTCATTATCAACGACAGCTT
TGGTAATGCCTTACTAAAGACCAAGAAAGGGCTGAAGGCCTTTCCTTTCT
ATGAGGAAACGGTGCAGCAGCATAGGGACATATTTGACTTCACTAACAAT
CGTGCCGTCTCCGCCAACACCAACACGGCCGCTACTGCCGCTCTGCTTGG
TTCATACGTGGCTGCACCTGATCGCCACCCGGACGCGTGGACATATTTTG
ACTTACCGAATCTTTTTACGATGGGGAAAGCTCTGGGGTATAAGCTGGCC
TTGTTCATGCCATATGACGATTGGTATCCGTTTACGGGCATCTATGGAGG
TCGTTTTGACAAGATCGTGAGCAAAAATACGTTGAATGGAACGGTCGCGA
ATGATATGGGTATGGACGACCGGCTCATTACCGCTGAAGTTCTCAAGTTC
CTGGAGGAGGAAGGAGTAAAGAGAGGGAGGGTAAAGCAGCGGCAAGGTGA
TGAGAAAGGGAAGTATGCGAATGGGGGAAAGCAGGCGGAGGAGGAGGAGG
TAGCGGATTTGCAGCCATTTATTGTCGTTATTTTCTGGAACAATATGCAT
ACTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGC
AAACCAATCGATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAA
CAAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAG
ACAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTAC
TGCTACTGCCGCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGA
GGAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCC
TCGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAA
CCAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCG
ACAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCC
ACGTTGAACAAGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGA
CCCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGC
ACTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAA
CTGACGTCCAACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATG
GGACACGACGGAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATG
GCAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGG
CAGGGACGGCCTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTGTTTT
TAATGCCACGCACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGC
TGGAGGCGATTGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGA
TGGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGA
GCTGAAGACGAATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTT
GGGATTATTTGTAG back to topprotein sequence of NO02G05530.1 >NO02G05530.1-protein ID=NO02G05530.1-protein|Name=NO02G05530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp
MAAALGRRRPRLDGAAARGKRLVGVFASALAVGLGFTPLHLFYLHLRGMN
RRRNLLACFLENIIAYHLLLLLLRQALYAVPATTRKQQRRQLLVLLVAAA
AVFCHAFIVAAQVSAVALMGSRMNGDLIYNAVWAVKTNSWGETDAKYFFP
FVLPATLAIDMAWLFWGLKLSCGGNGGILDYDEDNAEVKAALKRKAAALG
RDCSVKSLCLTFGIVGLLRYGLLWRGYSPVANTVYSLAQYSQMTGPSNLK
RSKLPRRLPPHSQAHKRYSYNYTALSDLAAAYAAAAETTRVASSDTHGQQ
QKKKDKPNVVLIINDSFGNALLKTKKGLKAFPFYEETVQQHRDIFDFTNN
RAVSANTNTAATAALLGSYVAAPDRHPDAWTYFDLPNLFTMGKALGYKLA
LFMPYDDWYPFTGIYGGRFDKIVSKNTLNGTVANDMGMDDRLITAEVLKF
LEEEGVKRGRVKQRQGDEKGKYANGGKQAEEEEVADLQPFIVVIFWNNMH
TPFLQNPRYERAGDLAANQSMSEASPRTEIGDETKRAVMRKTLLPGTKTE
TVTAGAANGGDSDAGATATAATAAATPGSQTTTRKTKTLVSPDVQGKANS
SIIIREDRAIHAMEIGNQMMQDVWETLESTGLLDNTLVSFQSDHGETADS
TLNKPLAGPVLHKRLADPDSLYLATPLWMHIPPHLLSSSEREVLSENRDK
LTSNMDLMPTFVEVLKWDTTENMFRERPSIFKHGRSLLRPVEADRLTSGW
QGRPFVKSCDWTHGFVFNATHTLILRAGENHAVLEAIDQEDGAWTTVKER
WAVKDLPAEEVAWWTRELKTNHADMVMALKDCSWDYL* back to topmRNA from alignment at chr2:1471933..1474446+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05530.1 ID=NO02G05530.1|Name=NO02G05530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp|location=Sequence derived from alignment at chr2:1471933..1474446+ (Nannochloropsis oceanica)
ATGGCGGCAGCGCTGGGGAGGAGAAGACCACGGCTTGATGGCGCAGCAGC
AAGGGGAAAGCGACTCGTTGGAGTCTTTGCCAGTGCTCTTGCTGTGGGCC
TGGGCTTCACGCCTCTGCATCTTTTTTATCTCCATCTACGCGGCATGAAT
CGGCGCCGCAACTTGCTGGCGTGCTTCTTGGAGAACATCATAGCTTATCA
CCTGCTGCTCCTGCTGCTACGGCAAGCTCTCTACGCCGTACCCGCCACCA
CCCGCAAGCAGCAGCGTCGCCAGCTCCTGGTACTACTCGTGGCCGCGGCG
GCCGTCTTTTGCCATGCCTTCATTGTGGCGGCCCAGGTATCGGCGGTGGC
GCTGATGGGCTCGAGAATGAACGGGGACTTGATCTACAACGCCGTATGGG
CTGTGAAGACAAATTCATGGGGAGAGACGGATGCAAAGTATTTTTTCCCT
TTTGTCCTCCCCGCCACCTTGGCCATTGACATGGCCTGGCTCTTCTGGGG
TCTTAAACTCTCATGTGGCGGGAACGGTGGCATACTAGACTATGACGAGG
ACAATGCAGAGGTCAAGGCCGCGCTAAAGAGAAAAGCTGCGGCGTTGGGT
CGTGACTGTAGTGTGAAATCCTTGTGCTTGACGTTTGGAATTGTGGGCTT
GCTGCGCTACGGCCTGCTGTGGCGGGGCTATTCACCTGTTGCCAACACGG
TTTATTCACTTGCGCAATACAGTCAAATGACAGGACCCTCTAACTTAAAG
CGAAGCAAGCTTCCGAGAAGATTGCCGCCACACTCACAAGCACACAAGCG
ATATTCCTACAATTATACAGCCCTCTCTGATCTCGCTGCTGCATACGCCG
CGGCCGCTGAGACCACGCGGGTTGCCAGCAGCGACACCCACGGACAGCAG
CAGAAGAAGAAGGACAAGCCCAATGTGGTTCTCATTATCAACGACAGCTT
TGGTAATGCCTTACTAAAGACCAAGAAAGGGCTGAAGGCCTTTCCTTTCT
ATGAGGAAACGGTGCAGCAGCATAGGGACATATTTGACTTCACTAACAAT
CGTGCCGTCTCCGCCAACACCAACACGGCCGCTACTGCCGCTCTGCTTGG
TTCATACGTGGCTGCACCTGATCGCCACCCGGACGCGTGGACATATTTTG
ACTTACCGAATCTTTTTACGATGGGGAAAGCTCTGGGGTATAAGCTGGCC
TTGTTCATGCCATATGACGATTGGTATCCGTTTACGGGCATCTATGGAGG
TCGTTTTGACAAGATCGTGAGCAAAAATACGTTGAATGGAACGGTCGCGA
ATGATATGGGTATGGACGACCGGCTCATTACCGCTGAAGTTCTCAAGTTC
CTGGAGGAGGAAGGAGTAAAGAGAGGGAGGGTAAAGCAGCGGCAAGGTGA
TGAGAAAGGGAAGTATGCGAATGGGGGAAAGCAGGCGGAGGAGGAGGAGG
TAGCGGATTTGCAGCCATTTATTGTCGTTATTTTCTGGAACAATATGCAT
ACTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGC
AAACCAATCGATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAA
CAAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAG
ACAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTAC
TGCTACTGCCGCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGA
GGAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCC
TCGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAA
CCAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCG
ACAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCC
ACGTTGAACAAGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGA
CCCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGC
ACTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAA
CTGACGTCCAACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATG
GGACACGACGGAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATG
GCAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGG
CAGGGACGGCCTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTGTTTT
TAATGCCACGCACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGC
TGGAGGCGATTGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGA
TGGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGA
GCTGAAGACGAATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTT
GGGATTATTTGTAG back to topCoding sequence (CDS) from alignment at chr2:1471933..1474446+ >NO02G05530.1 ID=NO02G05530.1|Name=NO02G05530.1|organism=Nannochloropsis oceanica|type=CDS|length=2514bp|location=Sequence derived from alignment at chr2:1471933..1474446+ (Nannochloropsis oceanica)
ATGGCGGCAGCGCTGGGGAGGAGAAGACCACGGCTTGATGGCGCAGCAGC
AAGGGGAAAGCGACTCGTTGGAGTCTTTGCCAGTGCTCTTGCTGTGGGCC
TGGGCTTCACGCCTCTGCATCTTTTTTATCTCCATCTACGCGGCATGAAT
CGGCGCCGCAACTTGCTGGCGTGCTTCTTGGAGAACATCATAGCTTATCA
CCTGCTGCTCCTGCTGCTACGGCAAGCTCTCTACGCCGTACCCGCCACCA
CCCGCAAGCAGCAGCGTCGCCAGCTCCTGGTACTACTCGTGGCCGCGGCG
GCCGTCTTTTGCCATGCCTTCATTGTGGCGGCCCAGGTATCGGCGGTGGC
GCTGATGGGCTCGAGAATGAACGGGGACTTGATCTACAACGCCGTATGGG
CTGTGAAGACAAATTCATGGGGAGAGACGGATGCAAAGTATTTTTTCCCT
TTTGTCCTCCCCGCCACCTTGGCCATTGACATGGCCTGGCTCTTCTGGGG
TCTTAAACTCTCATGTGGCGGGAACGGTGGCATACTAGACTATGACGAGG
ACAATGCAGAGGTCAAGGCCGCGCTAAAGAGAAAAGCTGCGGCGTTGGGT
CGTGACTGTAGTGTGAAATCCTTGTGCTTGACGTTTGGAATTGTGGGCTT
GCTGCGCTACGGCCTGCTGTGGCGGGGCTATTCACCTGTTGCCAACACGG
TTTATTCACTTGCGCAATACAGTCAAATGACAGGACCCTCTAACTTAAAG
CGAAGCAAGCTTCCGAGAAGATTGCCGCCACACTCACAAGCACACAAGCG
ATATTCCTACAATTATACAGCCCTCTCTGATCTCGCTGCTGCATACGCCG
CGGCCGCTGAGACCACGCGGGTTGCCAGCAGCGACACCCACGGACAGCAG
CAGAAGAAGAAGGACAAGCCCAATGTGGTTCTCATTATCAACGACAGCTT
TGGTAATGCCTTACTAAAGACCAAGAAAGGGCTGAAGGCCTTTCCTTTCT
ATGAGGAAACGGTGCAGCAGCATAGGGACATATTTGACTTCACTAACAAT
CGTGCCGTCTCCGCCAACACCAACACGGCCGCTACTGCCGCTCTGCTTGG
TTCATACGTGGCTGCACCTGATCGCCACCCGGACGCGTGGACATATTTTG
ACTTACCGAATCTTTTTACGATGGGGAAAGCTCTGGGGTATAAGCTGGCC
TTGTTCATGCCATATGACGATTGGTATCCGTTTACGGGCATCTATGGAGG
TCGTTTTGACAAGATCGTGAGCAAAAATACGTTGAATGGAACGGTCGCGA
ATGATATGGGTATGGACGACCGGCTCATTACCGCTGAAGTTCTCAAGTTC
CTGGAGGAGGAAGGAGTAAAGAGAGGGAGGGTAAAGCAGCGGCAAGGTGA
TGAGAAAGGGAAGTATGCGAATGGGGGAAAGCAGGCGGAGGAGGAGGAGG
TAGCGGATTTGCAGCCATTTATTGTCGTTATTTTCTGGAACAATATGCAT
ACTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGC
AAACCAATCGATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAA
CAAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAG
ACAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTAC
TGCTACTGCCGCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGA
GGAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCC
TCGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAA
CCAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCG
ACAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCC
ACGTTGAACAAGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGA
CCCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGC
ACTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAA
CTGACGTCCAACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATG
GGACACGACGGAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATG
GCAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGG
CAGGGACGGCCTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTGTTTT
TAATGCCACGCACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGC
TGGAGGCGATTGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGA
TGGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGA
GCTGAAGACGAATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTT
GGGATTATTTGTAG back to top
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