NO02G05450.1, NO02G05450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05450.1
Unique NameNO02G05450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2183
Alignment locationchr2:1451501..1453810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1451501..1453810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05450.1 vs.
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 428.3 bits (1100), Expect = 1.900e-116
Identity = 214/301 (71.10%), Postives = 237/301 (78.74%), Query Frame = 0 
Query:    1 MRPYRVLLSLAVLVPFLALPS----------------------GTKAAGATRGVTDGEPETAEAHCCGMKGLGGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDAPREAVYIVVTLTPEGASWEDRLAEDR 280
            M+ +R L+ LA LVPFLAL S                      G  +  ATRG TDGEP TAE HCCGMKGLGGA +EVMCHP+TVAMGK FTVNV +TSD+KRPVDVHVDVLNA TKAFYAGKWEEFDTQAG  SLTI+MP WGV EPFLWKVF+TPRGEPFPNMLAETGFVAHLADYVKNDC  FKSYGF+PPE+ +N KTVDFV L+ VPA L PG+ A V+VEYN+VGA KA +S +LMRKGPNT ISS  D A PGQN + L LPVP DAP+EAVYIVVTLTP+GASWEDRLAED+
Sbjct:   81 MQLHRTLIGLAALVPFLALTSAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPKEAVYIVVTLTPDGASWEDRLAEDQ 381
The following BLAST results are available for this feature:
BLAST of NO02G05450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30149.11.900e-11671.10hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05450NO02G05450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05450.1NO02G05450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05450.1.cds1NO02G05450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05450.1.cds2NO02G05450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05450.1 ID=NO02G05450.1|Name=NO02G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
GAGCATTCGTTGCTTCTGTGGAAGAGCAACTCGATGCTCGTTTCGAGGTC
GCCTGCTTGCCAAGGACGTTTGAAACAACACCTTTCGCGGCGTCGTAGTA
TAAACCCAACCACAGCCTTGTACACGGATGCGTTTTAAGCTGTGCCACAT
CCTGTGCATGTGTGCCTGATTCGCATAGATATCCATCTTTGTCCGGAACT
TGTTCGACGTCCCCTCGATTACACGAGCCGCCTGGAGGGATGCCTTGTCG
GGCTCGGTGGTTCCGTATTCTTTGCTGTGTTTATTCCATCGCTCAAAAAT
ATGTCTATGTCTTGCCCTGATTTGACGCTTTTCAAGCTAGGACGGTCCCT
GGCCCCATACATCCCGCAGGACGGCATCCCACCTTCTTCAAGTTGCTGTC
TTATATTGTGCCGTGGCTATGGACGTGCGGGGCAATGCGGGGTCGGCAGA
AAAATAGCACGTCCCCACGATGGCACGTGCGTCCTCAGCAAGCGCACACC
ACTGGAACAGCCTTCCTCGTGCGCGCCCCGCCTTTTGTCCGCACCCATTG
ACAAAGCATTACATGCGTCCTCAGCAAGCACACCACTGGAATAGTCAGCC
TCGCCCGCGCCCCCCTCCCTATCAACATCCATTGACGGAGCATTCCCAAC
TCTTTTTTTCTCGACCTTAACACACCAGTCTCCCCCTGCATCCCTCCGCA
TCCCCCCACTAAACACAGCCAAACAACAAGCTACTCGACATCAGCTCCAA
GCAAGTACCAAGAAGGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTC
GCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGG
CGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACT
GCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCAC
CCTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAATGTGAACTTTAC
GAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGC
AAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCA
GGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCC
CTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACA
TGTTGGCGGAGACGGGCTTTGTGGCACACCTTGCCGACTACGTGAAGAAC
GACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCCCGAGATGAAGGA
TAACGACAAGACGGTCGATTTTGTCATCCTCAAACACGTCCCCGCCGAGC
TCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTACAACATGGTCGGC
GCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAAGGGGCCCAACAC
TCAGATCTCATCCACCGGGGATGCGGCGAAGCCGGGCCAGAACACGATGA
AACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAGGCTGTCTACATC
GTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGATCGCCTTGCGGA
GGACCGAACCTATCAAACCAAGATGGCAGGGATGCGAATGCGTCGGGAGT
AAGGAAGGGGTAGAGGGATGGAAGGAAAGTCAAGGGAAGAGTGTGCGTGT
TTATGAAAAAGTGTATGCATTGCTTGGCCGGCACGTGGCATACAGCTTTC
CGACAGATTGTGGAAAAGGAGGGTAGAAAAGATTATGGTAGAGTTATTGA
GGAAGGTAATGATAGATGTATTGTTTTGGGGTATCTTGTATGTACGACTG
GTGTGTACAATCAACGTATCCTCAGAAGTGTGAGCAAAGACACACGAGAG
GAAAGCAAACGAAACATGGCGCGGAGGAGGAGGCGACACTGTTTATCATA
GAGCGGAAAAATACGGAAAGTGTTGACACACGTAGGACGTAATGAAAACA
CCCGCCCACTCGGCCACAGGGGTTTGAGTGGGGAGGGTGTGGCGCCATAG
TCGCTCACACTCTCCTGACTGTGCTGGTTTTGAGACGACAGGCAGAAATT
GAGGTTCATACAAAGAAGTGATTCAATGATTCATTAAACACACGTTTCTT
ACTACAATGCAAGCGCGAGTTTAAGAGAGACTC
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protein sequence of NO02G05450.1

>NO02G05450.1-protein ID=NO02G05450.1-protein|Name=NO02G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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mRNA from alignment at chr2:1451501..1453810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05450.1 ID=NO02G05450.1|Name=NO02G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp|location=Sequence derived from alignment at chr2:1451501..1453810+ (Nannochloropsis oceanica)
GAGCATTCGTTGCTTCTGTGGAAGAGCAACTCGATGCTCGTTTCGAGGTC
GCCTGCTTGCCAAGGACGTTTGAAACAACACCTTTCGCGGCGTCGTAGTA
TAAACCCAACCACAGCCTTGTACACGGATGCGTTTTAAGCTGTGCCACAT
CCTGTGCATGTGTGCCTGATTCGCATAGATATCCATCTTTGTCCGGAACT
TGTTCGACGTCCCCTCGATTACACGAGCCGCCTGGAGGGATGCCTTGTCG
GGCTCGGTGGTTCCGTATTCTTTGCTGTGTTTATTCCATCGCTCAAAAAT
ATGTCTATGTCTTGCCCTGATTTGACGCTTTTCAAGCTAGGACGGTCCCT
GGCCCCATACATCCCGCAGGACGGCATCCCACCTTCTTCAAGTTGCTGTC
TTATATTGTGCCGTGGCTATGGACGTGCGGGGCAATGCGGGGTCGGCAGA
AAAATAGCACGTCCCCACGATGGCACGTGCGTCCTCAGCAAGCGCACACC
ACTGGAACAGCCTTCCTCGTGCGCGCCCCGCCTTTTGTCCGCACCCATTG
ACAAAGCATTACATGCGTCCTCAGCAAGCACACCACTGGAATAGTCAGCC
TCGCCCGCGCCCCCCTCCCTATCAACATCCATTGACGGAGCATTCCCAAC
TCTTTTTTTCTCGACCTTAACACACCAGTCTCCCCCTGCATCCCTCCGCA
TCCCCCCACTAAACACAGCCAAACAACAAGCTACTCGACATCAGCTCCAA
GCAAGTACCAAGAAGGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTC
GCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGG
CGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACT
GCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCAC
CCTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAATGTGAACTTTAC
GAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGC
AAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCA
GGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCC
CTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACA
TGTTGGCGGAGACGGGCTTTGTGGCACGTACGTAGTAGGAGGGAAGGAGG
GAGGGTGGGAAAATGAGGGATGAGGTAGATTGTTCTGTTGTAGATGCACC
AGATATCCATTCACTGACTCTTGTCCCTCATCTCGTTCTTTCCTCCTCCT
GCAGACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTTCAAATCGTA
TGGCTTCAACCCCCCCGAGATGAAGGATAACGACAAGACGGTCGATTTTG
TCATCCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACCACCGCCACA
GTGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTCCATTTCGGC
GTCGCTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCACCGGGGATG
CGGCGAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCCGTGCCTGGA
GACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGACTCCGGAAGG
AGCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATCAAACCAAGA
TGGCAGGGATGCGAATGCGTCGGGAGTAAGGAAGGGGTAGAGGGATGGAA
GGAAAGTCAAGGGAAGAGTGTGCGTGTTTATGAAAAAGTGTATGCATTGC
TTGGCCGGCACGTGGCATACAGCTTTCCGACAGATTGTGGAAAAGGAGGG
TAGAAAAGATTATGGTAGAGTTATTGAGGAAGGTAATGATAGATGTATTG
TTTTGGGGTATCTTGTATGTACGACTGGTGTGTACAATCAACGTATCCTC
AGAAGTGTGAGCAAAGACACACGAGAGGAAAGCAAACGAAACATGGCGCG
GAGGAGGAGGCGACACTGTTTATCATAGAGCGGAAAAATACGGAAAGTGT
TGACACACGTAGGACGTAATGAAAACACCCGCCCACTCGGCCACAGGGGT
TTGAGTGGGGAGGGTGTGGCGCCATAGTCGCTCACACTCTCCTGACTGTG
CTGGTTTTGAGACGACAGGCAGAAATTGAGGTTCATACAAAGAAGTGATT
CAATGATTCATTAAACACACGTTTCTTACTACAATGCAAGCGCGAGTTTA
AGAGAGACTC
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Coding sequence (CDS) from alignment at chr2:1451501..1453810+

>NO02G05450.1 ID=NO02G05450.1|Name=NO02G05450.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr2:1451501..1453810+ (Nannochloropsis oceanica)
ATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCCTTTCTT
AGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTGTGACAG
ACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAAGGCCTG
GGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGCGATGGG
CAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGCGGCCTG
TGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTCTACGCA
GGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCTCACGAT
CAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGGTGTTTG
TGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACGGGCTTT
GTGGCACACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTTCAAATC
GTATGGCTTCAACCCCCCCGAGATGAAGGATAACGACAAGACGGTCGATT
TTGTCATCCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACCACCGCC
ACAGTGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTCCATTTC
GGCGTCGCTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCACCGGGG
ATGCGGCGAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCCGTGCCT
GGAGACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGACTCCGGA
AGGAGCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATCAAACCA
AGATGGCAGGGATGCGAATGCGTCGGGAGTAA
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Synonyms
Publications