NO02G05220.1, NO02G05220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05220.1
Unique NameNO02G05220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr2:1396407..1397405 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1396407..1397405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05220.1 vs.
Match: EWM30124.1 (hypothetical protein Naga_100541g4 [Nannochloropsis gaditana])

HSP 1 Score: 188.3 bits (477), Expect = 2.800e-44
Identity = 104/131 (79.39%), Postives = 118/131 (90.08%), Query Frame = 0 
Query:    1 MDNDTLLAEEMQEQVRATHEIVRKLETEIQETMESLELETAAAEARRLRADQGVASLTREQGQMVSAGRKHAALIVKWWLWGLLLGWLLAIIVSVLVSPVLGFIVVVPILAIFLTMGYASSSVEMKVDIAN 132
            M +DTLLAE+MQEQ+RA  E+VRKLE EIQETME LE +TAAAEARRLRADQ VA+L ++Q QMVSAG+KHAALIVKWWLWGLLLGWLLAIIVS LVSPVL F+VV+PILAIFLT+GYASSSVEMKV  ++
Sbjct:   76 MRDDTLLAEDMQEQIRAMQEVVRKLEFEIQETMEDLEFQTAAAEARRLRADQAVATLHKDQKQMVSAGKKHAALIVKWWLWGLLLGWLLAIIVSALVSPVLAFMVVIPILAIFLTVGYASSSVEMKVSASS 206
The following BLAST results are available for this feature:
BLAST of NO02G05220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30124.12.800e-4479.39hypothetical protein Naga_100541g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05220NO02G05220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05220.1NO02G05220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05220.1.cds1NO02G05220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05220.1.cds2NO02G05220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05220.1.cds3NO02G05220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05220.1 ID=NO02G05220.1|Name=NO02G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGGACAACGATACACTGCTGGCAGAGGAGATGCAGGAGCAAGTGCGGGC
AACTCACGAGATCGTTCGCAAGCTTGAGACCGAAATCCAAGAGACCATGG
AATCACTAGAACTTGAAACTGCCGCCGCAGAAGCCCGTCGTCTGAGGGCG
GATCAAGGCGTCGCCTCCCTCACCCGAGAACAAGGGCAAATGGTTTCGGC
AGGGAGGAAACACGCCGCTCTAATCGTCAAGTGGTGGTTGTGGGGCTTGT
TGCTCGGGTGGCTGCTGGCAATTATTGTCTCGGTGCTGGTGTCGCCCGTG
TTGGGATTCATTGTGGTGGTCCCCATCCTGGCCATTTTCTTGACAATGGG
ATATGCGTCGTCGAGTGTGGAGATGAAGGTGGACATCGCCAATCTTAGAA
AAGAATGCCGGCGTCGAGGTCAGGTCGGCTCACAAACGCCTGAAGTTGAA
ACCGAAGAATTTATTGAAACCATTCTAGACGGCGTGGGCTATCCTCACCA
GGTAGATGGCTTGGGTGGCGGCAGCAACACCAGCAGCAGCAGCAGCAGCG
GTGGGGCCCTTCACCACCGACGGGCTTCCATGGATTACCATTCTGCACGA
CGAGGAGGGGGAGATGGAGGAGGAGGAGGGGGAGGAGGAGGGGTGTTGTC
CACCGTAGGTGGAGGGATATATAATGGCATATCCGCTGTGGGTGGGACGG
CGATGTGGTTGTTGGGTTTTGGGAAAGGAGGGACGAAGAGGGATTGA
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protein sequence of NO02G05220.1

>NO02G05220.1-protein ID=NO02G05220.1-protein|Name=NO02G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MDNDTLLAEEMQEQVRATHEIVRKLETEIQETMESLELETAAAEARRLRA
DQGVASLTREQGQMVSAGRKHAALIVKWWLWGLLLGWLLAIIVSVLVSPV
LGFIVVVPILAIFLTMGYASSSVEMKVDIANLRKECRRRGQVGSQTPEVE
TEEFIETILDGVGYPHQVDGLGGGSNTSSSSSSGGALHHRRASMDYHSAR
RGGGDGGGGGGGGGVLSTVGGGIYNGISAVGGTAMWLLGFGKGGTKRD*
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mRNA from alignment at chr2:1396407..1397405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05220.1 ID=NO02G05220.1|Name=NO02G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at chr2:1396407..1397405- (Nannochloropsis oceanica)
ATGGACAACGATACACTGCTGGCAGAGGAGATGCAGGAGCAAGTGCGGGC
AACTCACGAGATCGTTCGCAAGGTGAGCCTCACCACCCTTTTTTCCTCTT
TTCTCTTCATGCCCATGCAACTGTTCATTCCTGACGCCCCCTTCCCGTCA
TTTCTAGCTTGAGACCGAAATCCAAGAGACCATGGAATCACTAGAACTTG
AAACTGCCGCCGCAGAAGCCCGTCGTCTGAGGGCGGATCAAGGCGTCGCC
TCCCTCACCCGAGAACAAGGGCAAATGGTTTCGGCAGGGAGGAAACACGC
CGCTCTAATCGTCAAGTGGTGGTTGTGGGGCTTGTTGCTCGGGTGGCTGC
TGGCAATTATTGTCTCGGTGCTGGTGTCGCCCGTGTTGGGATTCATTGTG
GTGGTCCCCATCCTGGCCATTTTCTTGACAATGGGATATGCGTCGTCGAG
TGTGGAGATGAAGGTAGACGGAGGGGAAAGGAGAGTCGGAGAGATCGTGG
GAGGGAGAAGGAGTAGATATCTGTCATGAGGCTTTCTAAGAGCTGCATGC
CACAGATCCTTTTTCTTCTCCTTTTTTCTCACTTAAATCTCCCCTCCTCT
CCTCGCCCTTTCCTCCCTCCTTCCCGAAAGGTGGACATCGCCAATCTTAG
AAAAGAATGCCGGCGTCGAGGTCAGGTCGGCTCACAAACGCCTGAAGTTG
AAACCGAAGAATTTATTGAAACCATTCTAGACGGCGTGGGCTATCCTCAC
CAGGTAGATGGCTTGGGTGGCGGCAGCAACACCAGCAGCAGCAGCAGCAG
CGGTGGGGCCCTTCACCACCGACGGGCTTCCATGGATTACCATTCTGCAC
GACGAGGAGGGGGAGATGGAGGAGGAGGAGGGGGAGGAGGAGGGGTGTTG
TCCACCGTAGGTGGAGGGATATATAATGGCATATCCGCTGTGGGTGGGAC
GGCGATGTGGTTGTTGGGTTTTGGGAAAGGAGGGACGAAGAGGGATTGA
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Coding sequence (CDS) from alignment at chr2:1396407..1397405-

>NO02G05220.1 ID=NO02G05220.1|Name=NO02G05220.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr2:1396407..1397405- (Nannochloropsis oceanica)
ATGGACAACGATACACTGCTGGCAGAGGAGATGCAGGAGCAAGTGCGGGC
AACTCACGAGATCGTTCGCAAGCTTGAGACCGAAATCCAAGAGACCATGG
AATCACTAGAACTTGAAACTGCCGCCGCAGAAGCCCGTCGTCTGAGGGCG
GATCAAGGCGTCGCCTCCCTCACCCGAGAACAAGGGCAAATGGTTTCGGC
AGGGAGGAAACACGCCGCTCTAATCGTCAAGTGGTGGTTGTGGGGCTTGT
TGCTCGGGTGGCTGCTGGCAATTATTGTCTCGGTGCTGGTGTCGCCCGTG
TTGGGATTCATTGTGGTGGTCCCCATCCTGGCCATTTTCTTGACAATGGG
ATATGCGTCGTCGAGTGTGGAGATGAAGGTGGACATCGCCAATCTTAGAA
AAGAATGCCGGCGTCGAGGTCAGGTCGGCTCACAAACGCCTGAAGTTGAA
ACCGAAGAATTTATTGAAACCATTCTAGACGGCGTGGGCTATCCTCACCA
GGTAGATGGCTTGGGTGGCGGCAGCAACACCAGCAGCAGCAGCAGCAGCG
GTGGGGCCCTTCACCACCGACGGGCTTCCATGGATTACCATTCTGCACGA
CGAGGAGGGGGAGATGGAGGAGGAGGAGGGGGAGGAGGAGGGGTGTTGTC
CACCGTAGGTGGAGGGATATATAATGGCATATCCGCTGTGGGTGGGACGG
CGATGTGGTTGTTGGGTTTTGGGAAAGGAGGGACGAAGAGGGATTGA
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Synonyms
Publications