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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1381152..1383402 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05160.1 vs.
Match: EWM30112.1 (hypothetical protein Naga_100310g2 [Nannochloropsis gaditana]) HSP 1 Score: 486.5 bits (1251), Expect = 9.700e-134 Identity = 253/471 (53.72%), Postives = 333/471 (70.70%), Query Frame = 0
Query: 16 RRALVVMALMGMAYALVFAVIYSPQMASSTADSLLNRGLRLQHTIASLRISSNTT-ASGPSA--VAASHGEEEEDEHSSADLIGKNQNVGNTRNDY-EPLVGGSLWQALDAEMRARPDFEMLTSTKDVQPFRSPEEMARAQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQRDHLIYVSEGLTFNVSCFQDQGELVMVTSLRHPMARILSSYWYEGRYDSKPAYLEPGTSTALAAAVVNQTEIEATLPASFSAWVRFVRRNDYIRWAWMSTRWVWYSVDSYYIQTLTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHALGQDAEELPYGLLQRNKLSKPKNDSEIDRDFFAELWRANTWDILLYEYAQNLVRERLVAFQDHMTDLEQWRTGSE---NEGVATGARKSRRQQTDQLECRAPRNDPRWRK-RKQDYYKPNNDSYLYVMPRCMD 479
RRAL +M + + + ++ +Y+P+ A++T S RGL Q LRI T A P A A + D+ K +NV + + EPLVGGSLW+AL+AE+R RPDFE LTSTK V PFR EMA+ QACFR KG +LLHMRKAGG+TLR YLS++VE R+ L+YV+EG TFNVSCF DQGE++++TSLR P+ARILSSYWYEGRYD KPA L PGT ALAAA+ ++T+ +A +P SF WVR+VR+ DY+RW S R VWYSVD+YY+QTLTNRYR NT +G+ D+ELA+R+LASFD+V ITEWM W NQT+Y+Q +LG+ ++ G+ QRNKL + ++D+EIDR+ FA +WRANTWD+LLYE+A+NLV +RL AF+ E+ + G++ E ++ R S+ + +L C+A RNDPRWR+ +QDYYKPN DSYLYVMP+CMD
Sbjct: 13 RRALTIMTALAVGFGVLLTNMYAPKKAATTEMSA--RGLHSQTAKTRLRIGDVTALAKAPFAHWAKADASGASWASTDTQDITRKRKNVEVEKMEAKEPLVGGSLWRALEAELRGRPDFEALTSTKSVCPFRRQAEMAQTQACFRARKGSAFLLHMRKAGGTTLRNYLSALVENDREQLVYVAEGRTFNVSCFHDQGEMMILTSLRQPLARILSSYWYEGRYDYKPAPLVPGTDPALAAAIYDETKAKAAVPLSFQDWVRYVRQMDYVRWTRASARGVWYSVDNYYVQTLTNRYRHNTYAEVGKHDYELARRILASFDVVMITEWMGWANQTAYVQESLGEKGKDPSRGMNQRNKLIRLRDDTEIDREMFASVWRANTWDLLLYEFAKNLVTDRLAAFEK-----EKLQVGAQERSKEALSAANRSSQEGERKELVCQASRNDPRWRRDGRQDYYKPNPDSYLYVMPQCMD 476
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05160.1 ID=NO02G05160.1|Name=NO02G05160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp
CGACAGGGCTGGCACGATTTCCAGGCGCGCTTCGCTGGCCTCCCAATTTA
AATTTTGCCGGGCAACGAATTCTGCTGGCCTACACCTGTCCAGGCATAAT
GCAGGCATAATCCATAGATTAGACTGAGAGTCTGACAGCCCACAAAAGCA
ACCGATTGTATTCTCTAGGGACAAGATTGCCGCCAGGTCATACAGCGCCT
TGTTTGAGGGCGTCCAACTCCAAGCTCCAGCGACACGCGTCCTGTCCTGT
CCCCCTGGACCCAGCCAGGGGACCTAACTTCTGATCCCATTCCATCCAAG
AGCCCTACACTACCGCTTTATTGCGTTCTCTGTTGATGACATCCCCCCCC
GCGACGACTTACTCCTGGCGCTCCACGCCCAGGCGGGCGCTCGTCGTTAT
GGCCCTGATGGGGATGGCATATGCCCTTGTCTTCGCGGTCATCTACAGCC
CTCAAATGGCGAGTTCCACCGCGGATTCCCTTTTGAACCGTGGGTTACGG
TTGCAGCATACAATCGCAAGTTTGAGAATCAGTAGCAACACCACAGCGTC
GGGGCCCTCAGCAGTGGCAGCATCACATGGGGAAGAGGAGGAGGATGAAC
ACTCTTCGGCAGACCTGATAGGGAAGAATCAAAACGTCGGTAATACACGC
AACGATTATGAACCCTTGGTAGGCGGCAGTCTGTGGCAAGCCCTGGACGC
GGAGATGCGGGCGCGGCCAGATTTTGAAATGCTGACGTCCACGAAGGATG
TCCAACCGTTCCGATCTCCCGAGGAGATGGCGCGAGCCCAAGCTTGTTTC
CGACAGTCCAAGGGATACGGGTACCTGCTCCACATGCGCAAAGCGGGAGG
ATCAACTTTGCGGGGCTATTTGAGTTCTGTAGTGGAGAAACAGCGGGACC
ATTTAATTTACGTCTCGGAGGGGCTTACCTTCAACGTCTCATGCTTCCAG
GACCAAGGGGAGCTTGTAATGGTCACATCTCTTCGGCACCCCATGGCGCG
TATTCTGTCTTCTTATTGGTACGAGGGAAGGTACGATTCCAAGCCCGCTT
ATTTGGAACCCGGTACGAGTACCGCCCTAGCCGCTGCGGTCGTCAATCAA
ACGGAAATCGAAGCAACCTTGCCGGCGTCTTTTTCCGCATGGGTCCGCTT
TGTCCGACGAAATGATTACATACGTTGGGCTTGGATGAGTACTCGATGGG
TTTGGTACTCCGTAGATTCCTACTATATCCAAACTTTGACGAACCGCTAC
CGAAAGAATACTCGCAACAATATAGGCCGGAGGGATTTCGAGCTTGCAAA
GCGGGTGCTTGCAAGCTTTGACTTGGTCTCGATCACGGAGTGGATGGACT
GGAAGAACCAAACAAGCTACATCCAGCATGCGCTGGGGCAAGACGCAGAG
GAACTTCCGTACGGGCTGCTTCAGCGGAACAAGCTCTCCAAACCGAAAAA
TGATAGTGAGATCGACCGCGACTTTTTTGCTGAGCTGTGGCGGGCCAACA
CCTGGGATATACTCTTGTATGAATATGCTCAGAACCTAGTTCGGGAACGA
CTGGTTGCATTTCAGGATCACATGACGGACCTTGAACAATGGCGCACGGG
ATCAGAGAACGAAGGAGTTGCGACTGGCGCTCGAAAATCGCGGCGACAAC
AAACCGACCAATTAGAGTGTCGGGCGCCGCGGAACGACCCGCGCTGGAGG
AAGCGTAAGCAAGACTACTACAAGCCCAACAATGATTCCTATCTGTATGT
GATGCCGCGTTGTATGGATATGGGGGACGAAAAGCGGGGAGCATAAGACC
TGTGGGTAACTTCGTACATGCATGTGGAAAGTTTTTAGTAGCGCAACCCG
GTGAATACATAAGTCACTTAGGTGATAAAAGGGCGTACGAGACTGAGACA
ACATGGAAATTAGAGGATACTAAGGGGCAGATGCGCAAGTCGAGATGTGT
GTGTAACTGTGTGTTTGAGTGTGTGTGGAGTGTCTGTGAATATGGAGTGT
GGTAGGGAGGTTGGCCATTGTGTTGGATGACAGACGAGTGGCAGACACGT
ACGGTAAGAAATTAAAATACTGCGCCAAGGCGACATCGGTACGGAAGCAG
ACAAGGTGGTAAATGAGGGCGCGGGCGAAGCACAACACCTTCTGATGTGC
TACGGAGACCAATAAACCAAAATGTTCCTGCGACCAATCACAAAATAATA
ATGGGGAAAATATGAATAAGAAAAGAATCAAGACCAAATCGCGGTAACTG
C back to topprotein sequence of NO02G05160.1 >NO02G05160.1-protein ID=NO02G05160.1-protein|Name=NO02G05160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MTSPPATTYSWRSTPRRALVVMALMGMAYALVFAVIYSPQMASSTADSLL
NRGLRLQHTIASLRISSNTTASGPSAVAASHGEEEEDEHSSADLIGKNQN
VGNTRNDYEPLVGGSLWQALDAEMRARPDFEMLTSTKDVQPFRSPEEMAR
AQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQRDHLIYVSEGLTFN
VSCFQDQGELVMVTSLRHPMARILSSYWYEGRYDSKPAYLEPGTSTALAA
AVVNQTEIEATLPASFSAWVRFVRRNDYIRWAWMSTRWVWYSVDSYYIQT
LTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHAL
GQDAEELPYGLLQRNKLSKPKNDSEIDRDFFAELWRANTWDILLYEYAQN
LVRERLVAFQDHMTDLEQWRTGSENEGVATGARKSRRQQTDQLECRAPRN
DPRWRKRKQDYYKPNNDSYLYVMPRCMDMGDEKRGA* back to topmRNA from alignment at chr2:1381152..1383402- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05160.1 ID=NO02G05160.1|Name=NO02G05160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp|location=Sequence derived from alignment at chr2:1381152..1383402- (Nannochloropsis oceanica)
CGACAGGGCTGGCACGATTTCCAGGCGCGCTTCGCTGGCCTCCCAATTTA
AATTTTGCCGGGCAACGAATTCTGCTGGCCTACACCTGTCCAGGCATAAT
GCAGGCATAATCCATAGATTAGACTGAGAGTCTGACAGCCCACAAAAGCA
ACCGATTGTATTCTCTAGGGACAAGATTGCCGCCAGGTCATACAGCGCCT
TGTTTGAGGGCGTCCAACTCCAAGCTCCAGCGACACGCGTCCTGTCCTGT
CCCCCTGGACCCAGCCAGGGGACCTAACTTCTGATCCCATTCCATCCAAG
AGCCCTACACTACCGCTTTATTGCGTTCTCTGTTGATGACATCCCCCCCC
GCGACGACTTACTCCTGGCGCTCCACGCCCAGGCGGGCGCTCGTCGTTAT
GGCCCTGATGGGGATGGCATATGCCCTTGTCTTCGCGGTCATCTACAGCC
CTCAAATGGCGAGTTCCACCGCGGATTCCCTTTTGAACCGTGGGTTACGG
TTGCAGCATACAATCGCAAGTTTGAGAATCAGTAGCAACACCACAGCGTC
GGGGCCCTCAGCAGTGGCAGCATCACATGGGGAAGAGGAGGAGGATGAAC
ACTCTTCGGCAGACCTGATAGGGAAGAATCAAAACGTCGGTAATACACGC
AACGATTATGAACCCTTGGTAGGCGGCAGTCTGTGGCAAGCCCTGGACGC
GGAGATGCGGGCGCGGCCAGATTTTGAAATGCTGACGTCCACGAAGGATG
TCCAACCGTTCCGATCTCCCGAGGAGATGGCGCGAGCCCAAGCTTGTTTC
CGACAGTCCAAGGGATACGGGTACCTGCTCCACATGCGCAAAGCGGGAGG
ATCAACTTTGCGGGGCTATTTGAGTTCTGTAGTGGAGAAACAGCGGGACC
ATTTAATTTACGTCTCGGAGGGGCTTACCTTCAACGTCTCATGCTTCCAG
GACCAAGGGGAGCTTGTAATGGTCACATCTCTTCGGCACCCCATGGCGCG
TATTCTGTCTTCTTATTGGTACGAGGGAAGGTACGATTCCAAGCCCGCTT
ATTTGGAACCCGGTACGAGTACCGCCCTAGCCGCTGCGGTCGTCAATCAA
ACGGAAATCGAAGCAACCTTGCCGGCGTCTTTTTCCGCATGGGTCCGCTT
TGTCCGACGAAATGATTACATACGTTGGGCTTGGATGAGTACTCGATGGG
TTTGGTACTCCGTAGATTCCTACTATATCCAAACTTTGACGAACCGCTAC
CGAAAGAATACTCGCAACAATATAGGCCGGAGGGATTTCGAGCTTGCAAA
GCGGGTGCTTGCAAGCTTTGACTTGGTCTCGATCACGGAGTGGATGGACT
GGAAGAACCAAACAAGCTACATCCAGCATGCGCTGGGGCAAGACGCAGAG
GAACTTCCGTACGGGCTGCTTCAGCGGAACAAGCTCTCCAAACCGAAAAA
TGATAGTGAGATCGACCGCGACTTTTTTGCTGAGCTGTGGCGGGCCAACA
CCTGGGATATACTCTTGTATGAATATGCTCAGAACCTAGTTCGGGAACGA
CTGGTTGCATTTCAGGATCACATGACGGACCTTGAACAATGGCGCACGGG
ATCAGAGAACGAAGGAGTTGCGACTGGCGCTCGAAAATCGCGGCGACAAC
AAACCGACCAATTAGAGTGTCGGGCGCCGCGGAACGACCCGCGCTGGAGG
AAGCGTAAGCAAGACTACTACAAGCCCAACAATGATTCCTATCTGTATGT
GATGCCGCGTTGTATGGATATGGGGGACGAAAAGCGGGGAGCATAAGACC
TGTGGGTAACTTCGTACATGCATGTGGAAAGTTTTTAGTAGCGCAACCCG
GTGAATACATAAGTCACTTAGGTGATAAAAGGGCGTACGAGACTGAGACA
ACATGGAAATTAGAGGATACTAAGGGGCAGATGCGCAAGTCGAGATGTGT
GTGTAACTGTGTGTTTGAGTGTGTGTGGAGTGTCTGTGAATATGGAGTGT
GGTAGGGAGGTTGGCCATTGTGTTGGATGACAGACGAGTGGCAGACACGT
ACGGTAAGAAATTAAAATACTGCGCCAAGGCGACATCGGTACGGAAGCAG
ACAAGGTGGTAAATGAGGGCGCGGGCGAAGCACAACACCTTCTGATGTGC
TACGGAGACCAATAAACCAAAATGTTCCTGCGACCAATCACAAAATAATA
ATGGGGAAAATATGAATAAGAAAAGAATCAAGACCAAATCGCGGTAACTG
C back to topCoding sequence (CDS) from alignment at chr2:1381152..1383402- >NO02G05160.1 ID=NO02G05160.1|Name=NO02G05160.1|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at chr2:1381152..1383402- (Nannochloropsis oceanica)
ATGACATCCCCCCCCGCGACGACTTACTCCTGGCGCTCCACGCCCAGGCG
GGCGCTCGTCGTTATGGCCCTGATGGGGATGGCATATGCCCTTGTCTTCG
CGGTCATCTACAGCCCTCAAATGGCGAGTTCCACCGCGGATTCCCTTTTG
AACCGTGGGTTACGGTTGCAGCATACAATCGCAAGTTTGAGAATCAGTAG
CAACACCACAGCGTCGGGGCCCTCAGCAGTGGCAGCATCACATGGGGAAG
AGGAGGAGGATGAACACTCTTCGGCAGACCTGATAGGGAAGAATCAAAAC
GTCGGTAATACACGCAACGATTATGAACCCTTGGTAGGCGGCAGTCTGTG
GCAAGCCCTGGACGCGGAGATGCGGGCGCGGCCAGATTTTGAAATGCTGA
CGTCCACGAAGGATGTCCAACCGTTCCGATCTCCCGAGGAGATGGCGCGA
GCCCAAGCTTGTTTCCGACAGTCCAAGGGATACGGGTACCTGCTCCACAT
GCGCAAAGCGGGAGGATCAACTTTGCGGGGCTATTTGAGTTCTGTAGTGG
AGAAACAGCGGGACCATTTAATTTACGTCTCGGAGGGGCTTACCTTCAAC
GTCTCATGCTTCCAGGACCAAGGGGAGCTTGTAATGGTCACATCTCTTCG
GCACCCCATGGCGCGTATTCTGTCTTCTTATTGGTACGAGGGAAGGTACG
ATTCCAAGCCCGCTTATTTGGAACCCGGTACGAGTACCGCCCTAGCCGCT
GCGGTCGTCAATCAAACGGAAATCGAAGCAACCTTGCCGGCGTCTTTTTC
CGCATGGGTCCGCTTTGTCCGACGAAATGATTACATACGTTGGGCTTGGA
TGAGTACTCGATGGGTTTGGTACTCCGTAGATTCCTACTATATCCAAACT
TTGACGAACCGCTACCGAAAGAATACTCGCAACAATATAGGCCGGAGGGA
TTTCGAGCTTGCAAAGCGGGTGCTTGCAAGCTTTGACTTGGTCTCGATCA
CGGAGTGGATGGACTGGAAGAACCAAACAAGCTACATCCAGCATGCGCTG
GGGCAAGACGCAGAGGAACTTCCGTACGGGCTGCTTCAGCGGAACAAGCT
CTCCAAACCGAAAAATGATAGTGAGATCGACCGCGACTTTTTTGCTGAGC
TGTGGCGGGCCAACACCTGGGATATACTCTTGTATGAATATGCTCAGAAC
CTAGTTCGGGAACGACTGGTTGCATTTCAGGATCACATGACGGACCTTGA
ACAATGGCGCACGGGATCAGAGAACGAAGGAGTTGCGACTGGCGCTCGAA
AATCGCGGCGACAACAAACCGACCAATTAGAGTGTCGGGCGCCGCGGAAC
GACCCGCGCTGGAGGAAGCGTAAGCAAGACTACTACAAGCCCAACAATGA
TTCCTATCTGTATGTGATGCCGCGTTGTATGGATATGGGGGACGAAAAGC
GGGGAGCATAA back to top
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