|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:1368435..1372010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05120.1 vs.
Match: EWM30109.1 (tpr-repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 524.6 bits (1350), Expect = 2.800e-145 Identity = 277/382 (72.51%), Postives = 309/382 (80.89%), Query Frame = 0
Query: 47 VTSLPQPSICFAPRACAGASSRGRTPLPTATYAATHASTSSSTWHPLHPQLTSSPLSFLLSTSLHKAAFKISLLFLGGCSGAFGPLLTSPLQASAAEPSPAQIQQVQRAFQAFNDRDLRLAESLFDKSVAVWEKLERPRDEMAALIKARGNVKVDLKKFDAAIVDFDRVLTIMSVDGTKTDGSGEAAYSEYPDLFVQRGLAREGLSEWQAAVEDYSQAISLWGGGRGEGINPFVLTFRGNVLTRLGKYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEESALKLMNDVIRRQPGFTDMHVALAAHAWGEGKLGLAEKEWRFACENTSTGCAAYRDLDFVQRIRRWPPTLVTKLGAFLGKSKVVAEGGSSVLR 429
VT+LP S SSR TP + + + P + +L + L + ++H+A KIS+L LG S P L SPL A AA+PS AQIQQVQRAFQAFNDRDLR AE+LFD+SV WE+LERPRDEMAAL+KARGNVKVDLKKF+AAI DFDRVL+IMSVDGTKTDGSGEAAYSEYPD+FVQRGLA EGLS+W+AAV+DYS+AI LWGGGRGEGINPFVLTFRGN LTRLG+YKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEE+ +KLM DV+RRQPGF D+HVALAAHAWGEG LG AEKEWRFACE T+TGCA+YRDLDFVQRIRRWPP+LV KL FL KSKVVA GGSSVLR
Sbjct: 59 VTTLPSES-----------SSRVITPKAPSALLSCAQQDVQTKKRPFYSRL--EVFNALSTGNVHQAFVKISILLLG--SSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR 425
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05120.1 ID=NO02G05120.1|Name=NO02G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3413bp
ACGAAGGGACTGGATAATTGGTTCTAATAGGACAAGGCGAGACAGTGCTG
GGTAATAGGGCCCACGCGCACACGGAAGAATAGAGGAAGGCAAGTTGCAT
AAGCCCTCAAATTAGTAAATGCCTTTTTTTGATTCGTGACGTAACTCTAC
CAGTCTCTACTGAGCTATGCCGTTATGCCCATTCATCCCTCCCGCTCCCT
CTTCCTCTTCTCCTGCTCCTCCTCTCTCGCTTTCACCATCCGTAGCCGCC
GCTGCTGCCGCGGTACCTTCTTCTTCCTCCTCTTCGACGTCGTCGAATTG
CCCGCCTGCCGCCGCGCCCAAATTGGGGCTAAAGGTCATGAGTCCCTCGA
GGTGAGACAGCACACGGGCCTATGAGATGGTTATTGGAAGTGTTAGAATG
AGAATCATTTGTAAGCCAGTTGAATGTCATCACGCAGTCGTAGCCTACAT
CATCTTTTGTTACACACACGTCAACAAATTGAGAGCTTCATCGACCGTCA
CTGACAAGCAACCATCCATCTCCTCCTACCTGTTCTTCCGACGCGCCCCC
CGCGGCAGCAAAGGCGCTCTGGTCAAAAATTAAATCATCGTCGCCCTCAT
TTTCTTCGGCCTCTGGAGGGTCAGGGTTCATTAAAGCTGCCTTGGAAAGC
GCCTCGAAGAGAGGACTCACTGAATGAAGGGGAGGAAATTGCAAGATGTG
AGTAAATATGCACGAGATGACGGATGCGGCGAGACCAGGATATGAATGCT
GCAGACACTATATGAAAGTCCATATATTTAATGGAACATCTCTTCGAAAA
CGGGAGGATAGGGTTGAATGGGTTCTGCAATTATCGCATACCATCTAACC
AGGGCACGCATGAGCAAACACTTACGACTCTCTGGGTCCTGCGGCACGAA
GTAGATCTCTTTGGCCTCGTCCTCGTCCTCATCTTCCCCACCTTCTGAGA
CCTGCAGTGGTGATAAAAAGGCGGGAAGGCATTCTGGATAAGGAAGGATA
TTATCGAGGTCTTCTCCTTGAGAAAGGTACCCATCTTCCCTTCCCGCTTC
GACCTCTCAGCCCGTCCATCCATCGCATACCTGGCAGTACAAACATGGCT
TCGGAAAAGATGAAGGATCTTTGGAAATAGCATGGAGGGTGATGCAAGGG
GCATCTACCTTGTAAACCTTGCCCTCGACCCCTTCCTCTTGCTGCTGCTG
CTTCCATAGAAGGCATTTTGACGTTACTTGCAACAGGCCCCGGCCTTCCG
GTGCCATGGCACTGCCCCCATACGACATTTCTACGTCGGCCAGCTCGAAC
AAGACTCGCTCGTCCTACGGGAGAGCGGTGGTATGAAGGAGTTGAGGCGT
GAGAGGGTTAGATATGATTCGCTACTCAGGGACTTGTACTGCTTACCTGC
TCCATGATTGAAGCCGCCATTCGTTGCGTCGGTGTTGAAAACTTGGTGCC
TGTGCATATGTGAGTGCAGTGGGCAGCATGAGGTTAAAGGGCCGAGGCGA
ATCACAAGAGTGTGCATCGTCCGCTTGGAGGGGAAGAAAGAAGAGGGGGG
AGAGGAGGTCAGGCCCATCGCACCCATCGCGAACCATTCAAGAAACACAA
CCATGCTTTGCGTCCTCGCATGACCCAAATGGTCAGTTAGCCGTTTACTA
ATAAAGCACACAAGCATGATTCGAAGAAACATAATACAACATCTCTGAGT
TTTGACAGTGGACAAAATGTAGCCCACACAAAGGGAAAGGAAGCGGGTGG
CGTGTCTAACATCCTTCAAGGCATTGCATTCCTGGGACGAACGAGGACCA
AATTGCGCCTACGTCTTCAGGGAAAAATTGCTACAGCGCATCCAATTTTG
TGACGAAAAAGTTGCAGATTTCTTATGGCACACCGTATGGAAAATGATGC
CAGACTCTGCTATGCTCAATGGGGTCGCGCGAGACACTCATCGGACGTTT
TGTTGCGTTCGTCGTTCGTGATTGGCCTGACGCAGGACATGACGCCTGTA
AAACACAATTCTTTCCAATCCGCTCCTAGTAATACAGCTACTCGCGCCTT
TATGGTGCCCACTATGAATAGCAGCACCAAGAAGCGGCAAAGATGGCAGC
TTCCATCGCGATTGATTCATCACTTCACCGCCTCTCCTCCCCTCTCTCTC
GTCTTCAACACAGTAAGATGCCATCACCGACACAGCCACGGCGGTACAAT
TTGTCCTGGACATGCCTAATACTAGGGTTAGTCACGTCCCTCCCCCAGCC
TTCGATCTGCTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCC
GGACGCCCCTTCCGACTGCGACCTATGCCGCCACGCACGCCTCTACCAGC
TCAAGTACCTGGCACCCGCTCCATCCCCAACTGACTTCCAGTCCCTTGTC
CTTTCTCTTGTCCACCTCACTTCATAAAGCTGCCTTTAAGATCAGCCTCC
TCTTTCTTGGTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCACCTCCCCC
CTCCAGGCCTCGGCTGCCGAACCGTCCCCCGCGCAGATCCAGCAAGTTCA
ACGTGCCTTTCAAGCGTTCAATGACCGAGACTTACGCCTGGCCGAATCTT
TGTTCGATAAGTCGGTGGCTGTTTGGGAGAAATTGGAACGGCCCAGAGAC
GAGATGGCAGCGTTGATCAAAGCCCGTGGGAACGTTAAAGTGGACCTCAA
GAAATTTGATGCGGCCATAGTTGATTTTGACAGGGTTTTGACGATCATGA
GCGTGGACGGGACCAAGACGGACGGAAGTGGGGAAGCGGCTTATTCAGAG
TATCCAGATCTGTTCGTGCAGCGGGGCTTGGCGAGGGAGGGACTGAGCGA
GTGGCAAGCCGCCGTTGAGGACTACAGCCAAGCCATCTCTCTCTGGGGCG
GGGGGCGAGGAGAGGGAATCAATCCCTTTGTGCTCACTTTTCGTGGGAAT
GTATTGACGAGGCTGGGGAAGTACAAAGATGCCTTGCAGGACTTCGAGGC
GTCTGCGGATTTATTTCTGGCGTCGAGAGATGAGGAGGATGCGTTGCTGG
CCCGGGCGAACGCGGCGTTGACGTACTATGAACTGGGGTATGAGGAATCT
GCATTAAAGTTAATGAATGACGTGATCAGGCGACAGCCCGGCTTCACGGA
TATGCACGTGGCGTTGGCAGCCCATGCGTGGGGGGAGGGGAAGCTTGGGT
TGGCGGAAAAGGAATGGAGGTTTGCATGTGAGAACACGAGTACGGGGTGT
GCGGCTTATAGAGATTTGGATTTTGTTCAACGGATACGGAGGTGGCCTCC
TACGCTGGTGACGAAGCTCGGTGCGTTTTTGGGGAAGAGCAAGGTGGTGG
CGGAGGGGGGGAGTAGCGTATTGAGATGAAGGAGGGTGAGGGAGGGGGGA
GGGCGAGAAAGGG back to topprotein sequence of NO02G05120.1 >NO02G05120.1-protein ID=NO02G05120.1-protein|Name=NO02G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MAASIAIDSSLHRLSSPLSRLQHSKMPSPTQPRRYNLSWTCLILGLVTSL
PQPSICFAPRACAGASSRGRTPLPTATYAATHASTSSSTWHPLHPQLTSS
PLSFLLSTSLHKAAFKISLLFLGGCSGAFGPLLTSPLQASAAEPSPAQIQ
QVQRAFQAFNDRDLRLAESLFDKSVAVWEKLERPRDEMAALIKARGNVKV
DLKKFDAAIVDFDRVLTIMSVDGTKTDGSGEAAYSEYPDLFVQRGLAREG
LSEWQAAVEDYSQAISLWGGGRGEGINPFVLTFRGNVLTRLGKYKDALQD
FEASADLFLASRDEEDALLARANAALTYYELGYEESALKLMNDVIRRQPG
FTDMHVALAAHAWGEGKLGLAEKEWRFACENTSTGCAAYRDLDFVQRIRR
WPPTLVTKLGAFLGKSKVVAEGGSSVLR* back to topmRNA from alignment at chr2:1368435..1372010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05120.1 ID=NO02G05120.1|Name=NO02G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3576bp|location=Sequence derived from alignment at chr2:1368435..1372010+ (Nannochloropsis oceanica)
ACGAAGGGACTGGATAATTGGTTCTAATAGGACAAGGCGAGACAGTGCTG
GGTAATAGGGCCCACGCGCACACGGAAGAATAGAGGAAGGCAAGTTGCAT
AAGCCCTCAAATTAGTAAATGCCTTTTTTTGATTCGTGACGTAACTCTAC
CAGTCTCTACTGAGCTATGCCGTTATGCCCATTCATCCCTCCCGCTCCCT
CTTCCTCTTCTCCTGCTCCTCCTCTCTCGCTTTCACCATCCGTAGCCGCC
GCTGCTGCCGCGGTACCTTCTTCTTCCTCCTCTTCGACGTCGTCGAATTG
CCCGCCTGCCGCCGCGCCCAAATTGGGGCTAAAGGTCATGAGTCCCTCGA
GGTGAGACAGCACACGGGCCTATGAGATGGTTATTGGAAGTGTTAGAATG
AGAATCATTTGTAAGCCAGTTGAATGTCATCACGCAGTCGTAGCCTACAT
CATCTTTTGTTACACACACGTCAACAAATTGAGAGCTTCATCGACCGTCA
CTGACAAGCAACCATCCATCTCCTCCTACCTGTTCTTCCGACGCGCCCCC
CGCGGCAGCAAAGGCGCTCTGGTCAAAAATTAAATCATCGTCGCCCTCAT
TTTCTTCGGCCTCTGGAGGGTCAGGGTTCATTAAAGCTGCCTTGGAAAGC
GCCTCGAAGAGAGGACTCACTGAATGAAGGGGAGGAAATTGCAAGATGTG
AGTAAATATGCACGAGATGACGGATGCGGCGAGACCAGGATATGAATGCT
GCAGACACTATATGAAAGTCCATATATTTAATGGAACATCTCTTCGAAAA
CGGGAGGATAGGGTTGAATGGGTTCTGCAATTATCGCATACCATCTAACC
AGGGCACGCATGAGCAAACACTTACGACTCTCTGGGTCCTGCGGCACGAA
GTAGATCTCTTTGGCCTCGTCCTCGTCCTCATCTTCCCCACCTTCTGAGA
CCTGCAGTGGTGATAAAAAGGCGGGAAGGCATTCTGGATAAGGAAGGATA
TTATCGAGGTCTTCTCCTTGAGAAAGGTACCCATCTTCCCTTCCCGCTTC
GACCTCTCAGCCCGTCCATCCATCGCATACCTGGCAGTACAAACATGGCT
TCGGAAAAGATGAAGGATCTTTGGAAATAGCATGGAGGGTGATGCAAGGG
GCATCTACCTTGTAAACCTTGCCCTCGACCCCTTCCTCTTGCTGCTGCTG
CTTCCATAGAAGGCATTTTGACGTTACTTGCAACAGGCCCCGGCCTTCCG
GTGCCATGGCACTGCCCCCATACGACATTTCTACGTCGGCCAGCTCGAAC
AAGACTCGCTCGTCCTACGGGAGAGCGGTGGTATGAAGGAGTTGAGGCGT
GAGAGGGTTAGATATGATTCGCTACTCAGGGACTTGTACTGCTTACCTGC
TCCATGATTGAAGCCGCCATTCGTTGCGTCGGTGTTGAAAACTTGGTGCC
TGTGCATATGTGAGTGCAGTGGGCAGCATGAGGTTAAAGGGCCGAGGCGA
ATCACAAGAGTGTGCATCGTCCGCTTGGAGGGGAAGAAAGAAGAGGGGGG
AGAGGAGGTCAGGCCCATCGCACCCATCGCGAACCATTCAAGAAACACAA
CCATGCTTTGCGTCCTCGCATGACCCAAATGGTCAGTTAGCCGTTTACTA
ATAAAGCACACAAGCATGATTCGAAGAAACATAATACAACATCTCTGAGT
TTTGACAGTGGACAAAATGTAGCCCACACAAAGGGAAAGGAAGCGGGTGG
CGTGTCTAACATCCTTCAAGGCATTGCATTCCTGGGACGAACGAGGACCA
AATTGCGCCTACGTCTTCAGGGAAAAATTGCTACAGCGCATCCAATTTTG
TGACGAAAAAGTTGCAGATTTCTTATGGCACACCGTATGGAAAATGATGC
CAGACTCTGCTATGCTCAATGGGGTCGCGCGAGACACTCATCGGACGTTT
TGTTGCGTTCGTCGTTCGTGATTGGCCTGACGCAGGACATGACGCCTGTA
AAACACAATTCTTTCCAATCCGCTCCTAGTAATACAGCTACTCGCGCCTT
TATGGTGCCCACTATGAATAGCAGCACCAAGAAGCGGCAAAGATGGCAGC
TTCCATCGCGATTGATTCATCACTTCACCGCCTCTCCTCCCCTCTCTCTC
GTCTTCAACACAGTAAGATGCCATCACCGACACAGCCACGGCGGTACAAT
TTGTCCTGGACATGCCTAATACTAGGGTTAGTCACGTCCCTCCCCCAGCC
TTCGATCTGCTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTCCCGCGGCC
GGACGCCCCTTCCGACTGCGACCTATGCCGCCACGCACGCCTCTACCAGC
TCAAGTACCTGGCACCCGCTCCATCCCCAACTGACTTCCAGTCCCTTGTC
CTTTCTCTTGTCCACCTCACTTCATAAAGCTGCCTTTAAGATCAGCCTCC
TCTTTCTTGGTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCACCTCCCCC
CTCCAGGCCTCGGCTGCCGAACCGTCCCCCGCGCAGATCCAGCAAGTTCA
ACGTGCCTTTCAAGCGTTCAATGACCGAGACTTACGCCTGGCCGAATCTT
TGTTCGATAAGTCGGTGGCTGTTTGGGAGAAATTGGAACGGCCCAGAGAC
GAGATGGCAGCGTTGATCAAAGCCCGTGGGAACGTTAAAGTGGACCTCAA
GAAATTTGATGCGGCCATAGTTGATTTTGACAGGGTTTTGACGATCATGA
GCGTGGACGGGACCAAGACGGACGGAAGTGGGGAAGCGGCTTATTCAGAG
TATCCAGATCTGTTCGTGCAGCGGGGCTTGGCGAGGGTACGTCAATGGGG
GTAGGAGAGGAAGGGAAACATGATGGTCGAGAGAGAAGGATGGATGGCAA
GGATCGCATTTCTTCATGAGACTGTCTATTTCCCTACATTTGGAGCGATC
ATTCACCCCTTCTCTCCTCCTTCATTCTGGCCCATGCTACGACTGACAGG
AGGGACTGAGCGAGTGGCAAGCCGCCGTTGAGGACTACAGCCAAGCCATC
TCTCTCTGGGGCGGGGGGCGAGGAGAGGGAATCAATCCCTTTGTGCTCAC
TTTTCGTGGGAATGTATTGACGAGGCTGGGGAAGTACAAAGATGCCTTGC
AGGACTTCGAGGCGTCTGCGGATTTATTTCTGGCGTCGAGAGATGAGGAG
GATGCGTTGCTGGCCCGGGCGAACGCGGCGTTGACGTACTATGAACTGGG
GTATGAGGAATCTGCATTAAAGTTAATGAATGACGTGATCAGGCGACAGC
CCGGCTTCACGGATATGCACGTGGCGTTGGCAGCCCATGCGTGGGGGGAG
GGGAAGCTTGGGTTGGCGGAAAAGGAATGGAGGTTTGCATGTGAGAACAC
GAGTACGGGGTGTGCGGCTTATAGAGATTTGGATTTTGTTCAACGGATAC
GGAGGTGGCCTCCTACGCTGGTGACGAAGCTCGGTGCGTTTTTGGGGAAG
AGCAAGGTGGTGGCGGAGGGGGGGAGTAGCGTATTGAGATGAAGGAGGGT
GAGGGAGGGGGGAGGGCGAGAAAGGG back to topCoding sequence (CDS) from alignment at chr2:1368435..1372010+ >NO02G05120.1 ID=NO02G05120.1|Name=NO02G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr2:1368435..1372010+ (Nannochloropsis oceanica)
ATGGCAGCTTCCATCGCGATTGATTCATCACTTCACCGCCTCTCCTCCCC
TCTCTCTCGTCTTCAACACAGTAAGATGCCATCACCGACACAGCCACGGC
GGTACAATTTGTCCTGGACATGCCTAATACTAGGGTTAGTCACGTCCCTC
CCCCAGCCTTCGATCTGCTTTGCTCCGCGCGCGTGTGCGGGTGCTTCCTC
CCGCGGCCGGACGCCCCTTCCGACTGCGACCTATGCCGCCACGCACGCCT
CTACCAGCTCAAGTACCTGGCACCCGCTCCATCCCCAACTGACTTCCAGT
CCCTTGTCCTTTCTCTTGTCCACCTCACTTCATAAAGCTGCCTTTAAGAT
CAGCCTCCTCTTTCTTGGTGGCTGCAGCGGCGCTTTTGGACCCCTCCTCA
CCTCCCCCCTCCAGGCCTCGGCTGCCGAACCGTCCCCCGCGCAGATCCAG
CAAGTTCAACGTGCCTTTCAAGCGTTCAATGACCGAGACTTACGCCTGGC
CGAATCTTTGTTCGATAAGTCGGTGGCTGTTTGGGAGAAATTGGAACGGC
CCAGAGACGAGATGGCAGCGTTGATCAAAGCCCGTGGGAACGTTAAAGTG
GACCTCAAGAAATTTGATGCGGCCATAGTTGATTTTGACAGGGTTTTGAC
GATCATGAGCGTGGACGGGACCAAGACGGACGGAAGTGGGGAAGCGGCTT
ATTCAGAGTATCCAGATCTGTTCGTGCAGCGGGGCTTGGCGAGGGAGGGA
CTGAGCGAGTGGCAAGCCGCCGTTGAGGACTACAGCCAAGCCATCTCTCT
CTGGGGCGGGGGGCGAGGAGAGGGAATCAATCCCTTTGTGCTCACTTTTC
GTGGGAATGTATTGACGAGGCTGGGGAAGTACAAAGATGCCTTGCAGGAC
TTCGAGGCGTCTGCGGATTTATTTCTGGCGTCGAGAGATGAGGAGGATGC
GTTGCTGGCCCGGGCGAACGCGGCGTTGACGTACTATGAACTGGGGTATG
AGGAATCTGCATTAAAGTTAATGAATGACGTGATCAGGCGACAGCCCGGC
TTCACGGATATGCACGTGGCGTTGGCAGCCCATGCGTGGGGGGAGGGGAA
GCTTGGGTTGGCGGAAAAGGAATGGAGGTTTGCATGTGAGAACACGAGTA
CGGGGTGTGCGGCTTATAGAGATTTGGATTTTGTTCAACGGATACGGAGG
TGGCCTCCTACGCTGGTGACGAAGCTCGGTGCGTTTTTGGGGAAGAGCAA
GGTGGTGGCGGAGGGGGGGAGTAGCGTATTGAGATGA back to top
|