NO02G05000.1, NO02G05000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05000.1
Unique NameNO02G05000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr2:1340377..1341732 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1340377..1341732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05000.1 vs.
Match: EWM30170.1 (deacetylase sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 367.9 bits (943), Expect = 4.700e-98
Identity = 200/354 (56.50%), Postives = 246/354 (69.49%), Query Frame = 0 
Query:  107 KPHPPPRTIPTASKP--------KEGTSMVQGLIQALSGAMVYTDVGNLETNRRLWNRYAEEWH-----EGDKASRCNTTSS--------TWVQEMAAHTSKTSKKMPHDTPQHITVVGEEWSSQEDLEEVLHEFLLPYLTPEGVVAEVGVGGGRVAMHVMGKCSSLTCLDISVGMLAKAKAALLAHPAANTVTKLDFVLLGDSSAAASSSSSSSTTTTTTTGSSVQIEYPTHLHSTFDFLYSFDCLVHVDLHTLYQTLHQIRMILKPGGKAFLSTANLLTPAGFRRFAAQVKYTVGGFYFLSPDIVTLLLKKAGLKVLKTSEVPEGFKEFSDDKGPAKGNLYYGRDFLVVVER 440
            + +P PR   T S P        +EGTS+V+ +I +LSGAMVYTDVGN+ETNRRLWNRYAEEWH      G  +    + SS         WVQ+MAA+T+KTSK  P+  P  + ++G+EWSS EDLEEV+ +F+LPYLTPE  V EVGVGGGRVA  V+GKC  LTCLDIS  ML  A+ AL AHPAA   T L+F+L+G+ S  +  S               ++EYP  LH   DF+Y FD LVHVD+HTLY TL +IR +LK  GKAFLSTAN+L+PAG+RRFAAQ KYTVGGFYF+SP+IV  +L K G +V++ SE+PEGFKE SD  G AKGNLYYGRD+LVVVE+
Sbjct:   40 RQYPSPRPASTQSTPSGDAATPLREGTSIVRSVINSLSGAMVYTDVGNVETNRRLWNRYAEEWHGNCARNGPYSGSARSPSSELPANKPNVWVQQMAANTAKTSKSTPYSLPA-LALIGQEWSSPEDLEEVVRDFILPYLTPESAVVEVGVGGGRVAALVLGKCMRLTCLDISERMLEAARTALAAHPAAGA-TVLEFILVGNDSNPSLPSQ--------------RVEYPVSLHGRCDFVYCFDVLVHVDVHTLYHTLREIRRLLKASGKAFLSTANILSPAGWRRFAAQDKYTVGGFYFVSPEIVHGMLAKVGFRVVQHSEIPEGFKELSDTHGLAKGNLYYGRDYLVVVEK 377
The following BLAST results are available for this feature:
BLAST of NO02G05000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30170.14.700e-9856.50deacetylase sulfotransferase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05000NO02G05000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05000.1NO02G05000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05000.1.cds1NO02G05000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05000.1 ID=NO02G05000.1|Name=NO02G05000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGCGCTTTCTTCCTCCACTGACGTTTTCTTCCCCTGTACAATTTCCCGT
GGCATTTAGGCTTGGGTTGGACGACGCAAAAGAGGGAAAGGGCAAGGATA
TGGCGGACTCCCAAAAACAGTCTGCAGCAGCAGCACCAAGTTCACCTTCG
CCTTCTCCCTCTTCGATGATTGACGCTTTTGTTGGCACTGCAAACATGAA
CAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGAGGGCA
CGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTAAATCC
TTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATACCGAC
GGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGATACAGG
CCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGACCAAT
CGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGACAAGGC
AAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGCAGCAC
ACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAACATATC
ACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAGGTTCT
ACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGCCGAGG
TGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAATGTTCC
AGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCTAAGGC
TGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGATTTTG
TGTTGTTGGGCGATAGTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCC
ACCACCACCACCACCACCACCGGCAGCAGCGTTCAAATTGAATATCCCAC
GCACCTTCATTCCACCTTTGACTTCCTATATTCATTCGATTGTCTAGTGC
ACGTCGATCTTCACACACTCTACCAAACGCTTCATCAAATTCGCATGATC
CTCAAACCTGGAGGAAAGGCCTTCCTCTCCACTGCCAACCTCCTCACCCC
CGCCGGCTTCCGTCGTTTTGCCGCTCAAGTAAAGTATACCGTCGGTGGTT
TTTATTTCCTCTCTCCTGATATTGTTACCCTCCTGTTGAAAAAGGCAGGG
TTGAAGGTACTCAAGACGAGTGAGGTCCCTGAAGGGTTCAAGGAGTTTAG
TGATGACAAGGGGCCAGCGAAAGGCAACTTGTACTATGGACGGGATTTCC
TGGTGGTAGTTGAGAGGATGGAGAGGCAAGGAGGAGGAAGGGGAGGGGAG
AGATGA
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protein sequence of NO02G05000.1

>NO02G05000.1-protein ID=NO02G05000.1-protein|Name=NO02G05000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRFLPPLTFSSPVQFPVAFRLGLDDAKEGKGKDMADSQKQSAAAAPSSPS
PSPSSMIDAFVGTANMNKEQSQQQDKQQNESEGTAAASQSKSRSKALIKS
FSGVEVKPHPPPRTIPTASKPKEGTSMVQGLIQALSGAMVYTDVGNLETN
RRLWNRYAEEWHEGDKASRCNTTSSTWVQEMAAHTSKTSKKMPHDTPQHI
TVVGEEWSSQEDLEEVLHEFLLPYLTPEGVVAEVGVGGGRVAMHVMGKCS
SLTCLDISVGMLAKAKAALLAHPAANTVTKLDFVLLGDSSAAASSSSSSS
TTTTTTTGSSVQIEYPTHLHSTFDFLYSFDCLVHVDLHTLYQTLHQIRMI
LKPGGKAFLSTANLLTPAGFRRFAAQVKYTVGGFYFLSPDIVTLLLKKAG
LKVLKTSEVPEGFKEFSDDKGPAKGNLYYGRDFLVVVERMERQGGGRGGE
R*
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mRNA from alignment at chr2:1340377..1341732+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05000.1 ID=NO02G05000.1|Name=NO02G05000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at chr2:1340377..1341732+ (Nannochloropsis oceanica)
ATGCGCTTTCTTCCTCCACTGACGTTTTCTTCCCCTGTACAATTTCCCGT
GGCATTTAGGCTTGGGTTGGACGACGCAAAAGAGGGAAAGGGCAAGGATA
TGGCGGACTCCCAAAAACAGTCTGCAGCAGCAGCACCAAGTTCACCTTCG
CCTTCTCCCTCTTCGATGATTGACGCTTTTGTTGGCACTGCAAACATGAA
CAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGAGGGCA
CGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTAAATCC
TTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATACCGAC
GGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGATACAGG
CCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGACCAAT
CGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGACAAGGC
AAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGCAGCAC
ACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAACATATC
ACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAGGTTCT
ACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGCCGAGG
TGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAATGTTCC
AGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCTAAGGC
TGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGATTTTG
TGTTGTTGGGCGATAGTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCC
ACCACCACCACCACCACCACCGGCAGCAGCGTTCAAATTGAATATCCCAC
GCACCTTCATTCCACCTTTGACTTCCTATATTCATTCGATTGTCTAGTGC
ACGTCGATCTTCACACACTCTACCAAACGCTTCATCAAATTCGCATGATC
CTCAAACCTGGAGGAAAGGCCTTCCTCTCCACTGCCAACCTCCTCACCCC
CGCCGGCTTCCGTCGTTTTGCCGCTCAAGTAAAGTATACCGTCGGTGGTT
TTTATTTCCTCTCTCCTGATATTGTTACCCTCCTGTTGAAAAAGGCAGGG
TTGAAGGTACTCAAGACGAGTGAGGTCCCTGAAGGGTTCAAGGAGTTTAG
TGATGACAAGGGGCCAGCGAAAGGCAACTTGTACTATGGACGGGATTTCC
TGGTGGTAGTTGAGAGGATGGAGAGGCAAGGAGGAGGAAGGGGAGGGGAG
AGATGA
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Coding sequence (CDS) from alignment at chr2:1340377..1341732+

>NO02G05000.1 ID=NO02G05000.1|Name=NO02G05000.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr2:1340377..1341732+ (Nannochloropsis oceanica)
ATGCGCTTTCTTCCTCCACTGACGTTTTCTTCCCCTGTACAATTTCCCGT
GGCATTTAGGCTTGGGTTGGACGACGCAAAAGAGGGAAAGGGCAAGGATA
TGGCGGACTCCCAAAAACAGTCTGCAGCAGCAGCACCAAGTTCACCTTCG
CCTTCTCCCTCTTCGATGATTGACGCTTTTGTTGGCACTGCAAACATGAA
CAAGGAGCAAAGCCAGCAACAAGATAAGCAACAGAATGAGTCTGAGGGCA
CGGCAGCAGCATCTCAGTCAAAAAGTCGCTCAAAGGCTTTGATTAAATCC
TTTTCCGGCGTGGAAGTAAAACCTCATCCGCCGCCAAGGACGATACCGAC
GGCTAGTAAGCCGAAAGAAGGGACGTCGATGGTGCAAGGTTTGATACAGG
CCTTGTCGGGGGCCATGGTATATACGGACGTGGGTAATCTCGAGACCAAT
CGGCGCCTTTGGAATCGGTACGCGGAGGAATGGCATGAGGGCGACAAGGC
AAGCAGATGCAATACCACCAGCAGTACATGGGTCCAGGAAATGGCAGCAC
ACACATCCAAGACAAGCAAAAAAATGCCACACGACACCCCACAACATATC
ACAGTCGTAGGTGAAGAATGGAGCAGCCAGGAGGACCTAGAAGAGGTTCT
ACATGAGTTTCTCTTGCCGTACTTGACGCCGGAAGGTGTGGTGGCCGAGG
TGGGGGTAGGTGGTGGTCGGGTCGCGATGCATGTCATGGGGAAATGTTCC
AGTCTGACGTGTCTGGATATTTCGGTAGGGATGCTTGCTAAGGCTAAGGC
TGCCTTACTTGCCCATCCGGCGGCCAATACTGTCACCAAGCTGGATTTTG
TGTTGTTGGGCGATAGTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCC
ACCACCACCACCACCACCACCGGCAGCAGCGTTCAAATTGAATATCCCAC
GCACCTTCATTCCACCTTTGACTTCCTATATTCATTCGATTGTCTAGTGC
ACGTCGATCTTCACACACTCTACCAAACGCTTCATCAAATTCGCATGATC
CTCAAACCTGGAGGAAAGGCCTTCCTCTCCACTGCCAACCTCCTCACCCC
CGCCGGCTTCCGTCGTTTTGCCGCTCAAGTAAAGTATACCGTCGGTGGTT
TTTATTTCCTCTCTCCTGATATTGTTACCCTCCTGTTGAAAAAGGCAGGG
TTGAAGGTACTCAAGACGAGTGAGGTCCCTGAAGGGTTCAAGGAGTTTAG
TGATGACAAGGGGCCAGCGAAAGGCAACTTGTACTATGGACGGGATTTCC
TGGTGGTAGTTGAGAGGATGGAGAGGCAAGGAGGAGGAAGGGGAGGGGAG
AGATGA
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Synonyms
Publications