NO02G04990.1, NO02G04990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04990.1
Unique NameNO02G04990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length552
Alignment locationchr2:1339531..1340082 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1339531..1340082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04990.1 vs.
Match: EWM30165.1 (hypothetical protein Naga_100096g6 [Nannochloropsis gaditana])

HSP 1 Score: 179.9 bits (455), Expect = 7.300e-42
Identity = 123/194 (63.40%), Postives = 136/194 (70.10%), Query Frame = 0 
Query:    5 TPPRSSIALRREQSYEEASVWEPRVSPTGRIFVGNSLVNNESSE-------------GSSNESTPRSRDSQDQDQDMSFGRFRSGERQARSRGHGSGRGIGSVYIAGTTDGTD--GGEVVFALARGVATVVTLSALALVMVLLIIAEAVLMVVAEKLGLAPVVVMVLAIMFVVGRQMGVPFQSLARVLVFLWAF 184
            TPPR     R E S+EEA+VW P  SPTGRIFVG    +N  S              GSSN+STPRSRDSQD     S GR+ S              GI S+YIAGT+ G    GGEVVFALARGVATVVTLSALALVMVLLI+AEAVLM+VAEK+GLAPVV++VL IMF+VGRQMGVPFQSLARVLVFLWAF
Sbjct:    7 TPPRIRGIFRGESSHEEANVWAPSRSPTGRIFVGAG--SNSGSHRMATVSPSPVDNGGSSNDSTPRSRDSQDG----SVGRYYSESEGTDRSSRAVSSGIASIYIAGTSSGGSEGGGEVVFALARGVATVVTLSALALVMVLLIVAEAVLMLVAEKIGLAPVVILVLTIMFIVGRQMGVPFQSLARVLVFLWAF 194
The following BLAST results are available for this feature:
BLAST of NO02G04990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30165.17.300e-4263.40hypothetical protein Naga_100096g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04990NO02G04990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04990.1NO02G04990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04990.1.cds1NO02G04990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04990.1 ID=NO02G04990.1|Name=NO02G04990.1|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
ATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGGAGAGAGCA
GTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCCCACAGGGC
GGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCGAGGGGAGC
AGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAGGATCAGGA
CATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCGGAGTCGAG
GACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAGGAACGACG
GATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGGGGGGTGGC
AACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTTGTTGATCA
TTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCTTGGCTCCG
GTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGGCAGATGGG
GGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTGGGCATTTT
GA
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protein sequence of NO02G04990.1

>NO02G04990.1-protein ID=NO02G04990.1-protein|Name=NO02G04990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MAQDTPPRSSIALRREQSYEEASVWEPRVSPTGRIFVGNSLVNNESSEGS
SNESTPRSRDSQDQDQDMSFGRFRSGERQARSRGHGSGRGIGSVYIAGTT
DGTDGGEVVFALARGVATVVTLSALALVMVLLIIAEAVLMVVAEKLGLAP
VVVMVLAIMFVVGRQMGVPFQSLARVLVFLWAF*
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mRNA from alignment at chr2:1339531..1340082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04990.1 ID=NO02G04990.1|Name=NO02G04990.1|organism=Nannochloropsis oceanica|type=mRNA|length=552bp|location=Sequence derived from alignment at chr2:1339531..1340082- (Nannochloropsis oceanica)
ATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGGAGAGAGCA
GTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCCCACAGGGC
GGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCGAGGGGAGC
AGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAGGATCAGGA
CATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCGGAGTCGAG
GACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAGGAACGACG
GATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGGGGGGTGGC
AACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTTGTTGATCA
TTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCTTGGCTCCG
GTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGGCAGATGGG
GGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTGGGCATTTT
GA
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Coding sequence (CDS) from alignment at chr2:1339531..1340082-

>NO02G04990.1 ID=NO02G04990.1|Name=NO02G04990.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr2:1339531..1340082- (Nannochloropsis oceanica)
ATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGGAGAGAGCA
GTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCCCACAGGGC
GGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCGAGGGGAGC
AGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAGGATCAGGA
CATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCGGAGTCGAG
GACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAGGAACGACG
GATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGGGGGGTGGC
AACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTTGTTGATCA
TTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCTTGGCTCCG
GTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGGCAGATGGG
GGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTGGGCATTTT
GA
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Synonyms
Publications