NO02G04830.1, NO02G04830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04830.1
Unique NameNO02G04830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr2:1307902..1309237 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1307902..1309237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04830.1 vs.
Match: EWM30196.1 (protein set isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 308.5 bits (789), Expect = 2.000e-80
Identity = 169/281 (60.14%), Postives = 213/281 (75.80%), Query Frame = 0 
Query:    1 MVTKRG--TVNLSDLMKRKAPRTDMDGEDSSVQVPAETC-RNSSNAADEAE-EDGIKAIYAVQTELAALETAQAEGILQIIKKYNEQKLPVYARRQKEIEQVPEFWFRVLLVHPSTGEHITDLDQGALRHLTKLEVVDVKKD----ANEEAAVGA---GGTVTMPDYRVDFHFSPNVYFTNAVLWKEYRFRDHEATVTSSEIDWKDTVGAKDLKATLVTTLMAQDPMPKDVEPSFFSIFHAEDRDLEMGEVLKNEVWRDPVGIYMSAEFEEEEEEEEGGEE 271
            M TKRG   V+L +LMK+K+ R +   E S+   PAET  R+ S    E E E  +KAI  VQ+EL +LE +Q + + +I+KKY E K PVY+RRQ+ I+QVPEFWF+VLL HP+ GEHI+D DQGALRHLT +EVVDV ++    A EE + G    GG   +PDYRV+F+FSPNVYF N+VLWKE+RFR+ EATV++SE+ WKDT  +K L+ TLV  L+AQDP+P++V+PSFFSIFHAEDRDLEMG+VLK EVWRDPVGIY+SA+FEEE EE E GEE
Sbjct:    1 MSTKRGGGAVSLCELMKKKSSRKNSSDEAST---PAETISRSHSQQGSEGEVEHAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESEGGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEEGEEGEEGEE 278
The following BLAST results are available for this feature:
BLAST of NO02G04830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30196.12.000e-8060.14protein set isoform 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04830NO02G04830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04830.1NO02G04830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04830.1.cds1NO02G04830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04830.1.cds2NO02G04830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04830.1.cds3NO02G04830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04830.1 ID=NO02G04830.1|Name=NO02G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ATGGTAACAAAGCGCGGGACCGTCAACCTGAGTGATTTGATGAAGAGAAA
GGCCCCACGCACGGACATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCG
CAGAAACCTGTAGAAATTCCTCAAATGCAGCGGACGAAGCGGAAGAAGAT
GGCATCAAAGCAATTTATGCCGTACAAACAGAACTGGCTGCGTTGGAAAC
AGCACAGGCAGAAGGGATTTTACAGATAATCAAGAAGTATAACGAGCAAA
AACTGCCCGTGTATGCGCGCCGACAAAAGGAGATAGAACAGGTGCCTGAG
TTCTGGTTCCGCGTCTTGCTTGTGCATCCCTCAACGGGCGAGCACATAAC
CGACCTGGACCAAGGAGCTCTCCGCCACCTCACCAAACTAGAGGTGGTAG
ACGTGAAGAAGGATGCGAATGAGGAAGCAGCCGTGGGAGCAGGAGGGACA
GTAACGATGCCTGATTACCGGGTCGACTTCCATTTCTCGCCGAACGTGTA
CTTTACGAACGCAGTGTTGTGGAAGGAATATCGCTTTCGAGACCATGAGG
CTACCGTTACATCCTCTGAGATAGACTGGAAAGATACGGTGGGAGCAAAG
GATTTGAAAGCCACGTTGGTCACCACGTTGATGGCGCAAGACCCCATGCC
GAAGGACGTGGAGCCCTCGTTCTTTTCGATTTTTCATGCCGAGGACCGCG
ATCTGGAAATGGGGGAAGTGTTAAAGAATGAGGTGTGGCGGGATCCGGTG
GGTATTTATATGAGTGCAGAGTTTGAGGAGGAGGAGGAGGAGGAGGAGGG
AGGGGAGGAAGAGAAAGGGTGA
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protein sequence of NO02G04830.1

>NO02G04830.1-protein ID=NO02G04830.1-protein|Name=NO02G04830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MVTKRGTVNLSDLMKRKAPRTDMDGEDSSVQVPAETCRNSSNAADEAEED
GIKAIYAVQTELAALETAQAEGILQIIKKYNEQKLPVYARRQKEIEQVPE
FWFRVLLVHPSTGEHITDLDQGALRHLTKLEVVDVKKDANEEAAVGAGGT
VTMPDYRVDFHFSPNVYFTNAVLWKEYRFRDHEATVTSSEIDWKDTVGAK
DLKATLVTTLMAQDPMPKDVEPSFFSIFHAEDRDLEMGEVLKNEVWRDPV
GIYMSAEFEEEEEEEEGGEEEKG*
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mRNA from alignment at chr2:1307902..1309237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04830.1 ID=NO02G04830.1|Name=NO02G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at chr2:1307902..1309237+ (Nannochloropsis oceanica)
ATGGTAACAAAGCGCGGGACCGTCAACCTGAGTGATTTGATGAAGAGAAA
GGTGAGAGGCTGGGGATGGGAAGGCCAAGGCTTGTTGGGGTGTGGGGTTC
GAAGAGGATAGTGGTAGTGAAGGGCATGCAGTGTTCTGTGGCAGCGGAAT
ATACATCTTCTTGCTGCAGGCATACATTAAGATTGTCACATCGATGTTGA
TGCATGATGCGTCTCTATTATTTTCCCGTGAGCTCGCGCTAGAGCTGTCC
TCTCCAATCCTCTCCAGCCTCGTGGCTCCGCGCCGCATCTGCTGCTATAA
CCCCACCTAACCGCAGCGCAGCTTCGATCAAAATAGCCTAGATCATTTGT
TTTACAAGGAACTATTTTCCACGATGCTGTCAACTATCTATGGCTGTGCA
CTCATCCTTTCAAATAATTTAGGCCCCACGCACGGACATGGACGGTGAGG
ACAGTAGCGTTCAAGTCCCCGCAGAAACCTGTAGAAATTCCTCAAATGCA
GCGGACGAAGCGGAAGAAGATGGCATCAAAGCAATTTATGCCGTACAAAC
AGAACTGGCTGCGTTGGAAACAGCACAGGCAGAAGGGATTTTACAGATAA
TCAAGAAGTATAACGAGCAAAAACTGCCCGTGTATGCGCGCCGACAAAAG
GAGATAGAACAGGTATGTATGCATGGGAATTTAAAGAGATTAAGAAGGTT
CAAATAAATGAATAATCAACTTAGTTAGTAAACAAGTTGATAAATGAATC
AAAAAGCGAAAAAAGAAAAACGTCCTCAATGCTCAAGCTTGCACTCTTCC
CTTAGGTGCCTGAGTTCTGGTTCCGCGTCTTGCTTGTGCATCCCTCAACG
GGCGAGCACATAACCGACCTGGACCAAGGAGCTCTCCGCCACCTCACCAA
ACTAGAGGTGGTAGACGTGAAGAAGGATGCGAATGAGGAAGCAGCCGTGG
GAGCAGGAGGGACAGTAACGATGCCTGATTACCGGGTCGACTTCCATTTC
TCGCCGAACGTGTACTTTACGAACGCAGTGTTGTGGAAGGAATATCGCTT
TCGAGACCATGAGGCTACCGTTACATCCTCTGAGATAGACTGGAAAGATA
CGGTGGGAGCAAAGGATTTGAAAGCCACGTTGGTCACCACGTTGATGGCG
CAAGACCCCATGCCGAAGGACGTGGAGCCCTCGTTCTTTTCGATTTTTCA
TGCCGAGGACCGCGATCTGGAAATGGGGGAAGTGTTAAAGAATGAGGTGT
GGCGGGATCCGGTGGGTATTTATATGAGTGCAGAGTTTGAGGAGGAGGAG
GAGGAGGAGGAGGGAGGGGAGGAAGAGAAAGGGTGA
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Coding sequence (CDS) from alignment at chr2:1307902..1309237+

>NO02G04830.1 ID=NO02G04830.1|Name=NO02G04830.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr2:1307902..1309237+ (Nannochloropsis oceanica)
ATGGTAACAAAGCGCGGGACCGTCAACCTGAGTGATTTGATGAAGAGAAA
GGCCCCACGCACGGACATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCG
CAGAAACCTGTAGAAATTCCTCAAATGCAGCGGACGAAGCGGAAGAAGAT
GGCATCAAAGCAATTTATGCCGTACAAACAGAACTGGCTGCGTTGGAAAC
AGCACAGGCAGAAGGGATTTTACAGATAATCAAGAAGTATAACGAGCAAA
AACTGCCCGTGTATGCGCGCCGACAAAAGGAGATAGAACAGGTGCCTGAG
TTCTGGTTCCGCGTCTTGCTTGTGCATCCCTCAACGGGCGAGCACATAAC
CGACCTGGACCAAGGAGCTCTCCGCCACCTCACCAAACTAGAGGTGGTAG
ACGTGAAGAAGGATGCGAATGAGGAAGCAGCCGTGGGAGCAGGAGGGACA
GTAACGATGCCTGATTACCGGGTCGACTTCCATTTCTCGCCGAACGTGTA
CTTTACGAACGCAGTGTTGTGGAAGGAATATCGCTTTCGAGACCATGAGG
CTACCGTTACATCCTCTGAGATAGACTGGAAAGATACGGTGGGAGCAAAG
GATTTGAAAGCCACGTTGGTCACCACGTTGATGGCGCAAGACCCCATGCC
GAAGGACGTGGAGCCCTCGTTCTTTTCGATTTTTCATGCCGAGGACCGCG
ATCTGGAAATGGGGGAAGTGTTAAAGAATGAGGTGTGGCGGGATCCGGTG
GGTATTTATATGAGTGCAGAGTTTGAGGAGGAGGAGGAGGAGGAGGAGGG
AGGGGAGGAAGAGAAAGGGTGA
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Synonyms
Publications