NO02G04720.1, NO02G04720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04720.1
Unique NameNO02G04720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1032
Alignment locationchr2:1279106..1280396 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1279106..1280396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04720.1 vs.
Match: XP_005852715.1 (hypothetical protein NGA_0726700 [Nannochloropsis gaditana CCMP526]; EKU23118.1 hypothetical protein NGA_0726700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 476.9 bits (1226), Expect = 5.400e-131
Identity = 230/304 (75.66%), Postives = 259/304 (85.20%), Query Frame = 0 
Query:   46 SFSLLTMQSLRDQFFAAVDHNLKTKFSPEQGDLSRVRAFVESCKAGSIPPTAPTDLPYFQPSEEYVPGLTAKPWHDPHSFEWVQALEDASPIIQDELRGVLGAGRDPRDFKGDSNVMTVMGAGWTALRMQRLGLWNDHVCARFPRTLSLLASLSIPFAVRGVMFARQAPGTGVQPHSDGRNFILTLHLGLQVPKEEGLCWMRVAEERRGWEEGKAVVIDTTFEHETGNASEEERYVLIIDFWHPELTPVERAALREFYDLRNTFEGRTGGGGVGEGRPPPMEKRR---EKNGGWLAG---LFGG 344
            SFS + M SLRD+FFAAVD  LKT+F P QGD+SRVRAFVESCKAG++PP+APTDLPYFQPSEEYVPGLTAKPWHDP+SFEWV+ LE+A+PIIQ+ELR  LG G+DP+DF+ DSNVMTVMGAGWTALR+QRLGLWN+ VCARFPRTLS+LASL IPFAVRGVMFARQAP TGVQ HSDGRNFILT+HLGL++PKEEG CW+RV  ERR W+EGKA+VIDTTFEHETGN S E+RYVLI+DFWHP+L+  ERAALR FYDLRN FEGR  GGG   G+ PP    R    K GG LAG   LFGG
Sbjct:  332 SFSRMYMVSLRDKFFAAVDEELKTQFPPGQGDISRVRAFVESCKAGTVPPSAPTDLPYFQPSEEYVPGLTAKPWHDPYSFEWVRGLEEATPIIQEELRQALGQGQDPQDFRADSNVMTVMGAGWTALRLQRLGLWNEDVCARFPRTLSVLASLPIPFAVRGVMFARQAPETGVQAHSDGRNFILTMHLGLRIPKEEGACWIRVGGERRSWQEGKALVIDTTFEHETGNGSTEDRYVLIVDFWHPDLSVEERAALRSFYDLRNRFEGR--GGGTEGGKVPPQGSERGEKGKEGGVLAGLAALFGG 633
The following BLAST results are available for this feature:
BLAST of NO02G04720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852715.15.400e-13175.66hypothetical protein NGA_0726700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04720NO02G04720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04720.1NO02G04720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04720.1.cds1NO02G04720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04720.1.cds2NO02G04720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04720.1.cds3NO02G04720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04720.1 ID=NO02G04720.1|Name=NO02G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp
ATGATGCGTCATGTGGGGGGTTCCTTTCCTATCCTGCTCGTAGCCGTCCT
CCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGCATTTCTCCC
TCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGCTTCTCCCTCCTG
ACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGACCACAACCT
CAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCGTTCGTGCCT
TCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCTCCTACCGAC
CTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTTGACCGCAAA
GCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGGCCTTGGAAGATG
CGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGCGCGGGAAGG
GATCCGCGGGATTTCAAAGGCGACTCCAACGTCATGACCGTGATGGGCGC
GGGCTGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGAACGACCACG
TCTGTGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCTCTTTCTATA
CCTTTCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACCGGGGACAGG
TGTCCAACCCCACTCGGACGGTCGGAACTTTATCTTGACGCTTCATTTGG
GCCTCCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGGGTGGCGGAG
GAGAGGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATTGACACCACCTT
TGAGCATGAGACAGGTAACGCGAGTGAGGAGGAGAGATACGTCTTAATTA
TTGACTTTTGGCATCCAGAACTGACACCCGTGGAGAGGGCAGCGTTAAGG
GAGTTTTACGACTTGAGGAATACGTTCGAGGGGCGGACGGGAGGAGGGGG
AGTGGGGGAAGGGAGGCCACCACCGATGGAAAAGAGGAGGGAGAAGAATG
GAGGGTGGTTGGCAGGATTGTTTGGGGGATGA
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protein sequence of NO02G04720.1

>NO02G04720.1-protein ID=NO02G04720.1-protein|Name=NO02G04720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MMRHVGGSFPILLVAVLLLLPISQAFLPPMHFSLSSPMSTRRHRRSFSLL
TMQSLRDQFFAAVDHNLKTKFSPEQGDLSRVRAFVESCKAGSIPPTAPTD
LPYFQPSEEYVPGLTAKPWHDPHSFEWVQALEDASPIIQDELRGVLGAGR
DPRDFKGDSNVMTVMGAGWTALRMQRLGLWNDHVCARFPRTLSLLASLSI
PFAVRGVMFARQAPGTGVQPHSDGRNFILTLHLGLQVPKEEGLCWMRVAE
ERRGWEEGKAVVIDTTFEHETGNASEEERYVLIIDFWHPELTPVERAALR
EFYDLRNTFEGRTGGGGVGEGRPPPMEKRREKNGGWLAGLFGG*
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mRNA from alignment at chr2:1279106..1280396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04720.1 ID=NO02G04720.1|Name=NO02G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at chr2:1279106..1280396- (Nannochloropsis oceanica)
ATGATGCGTCATGTGGGGGGTTCCTTTCCTATCCTGCTCGTAGCCGTCCT
CCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGCATTTCTCCC
TCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGCTTCTCCCTCCTG
ACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGACCACAACCT
CAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCGTTCGTGCCT
TCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCTCCTACCGAC
CTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTTGACCGCAAA
GCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGGCCTTGGAAGATG
CGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGCGCGGGAAGG
GATCCGCGGGATTTCAAAGGGTGAGTGAGCTGAATGCGGGTGATACCGAT
TTCGAATGGGTTTTAACCGCAAGCTCTTTTAATTGAGAAGAAAGATGCAT
TACGTACGCTTTCCAACACTATTATCCGCTCAATTTATCCCCTATCTCTC
TTCATCTCTCTTGTAGCGACTCCAACGTCATGACCGTGATGGGCGCGGGC
TGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGAACGACCACGTCTG
TGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCTCTTTCTATACCTT
TCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACCGGGGACAGGTGTC
CAACCCCACTCGGACGGTCGGAACTTTATCTTGACGCTTCATTTGGGCCT
CCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGGGTGGCGGAGGAGA
GGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATGTAAGTGTAATTGAAA
TCGAACGATTTAATATCTGTACCATATATTTATATTCACACCACTTACCC
TTTCCCTTGTCTTCCTCTCTTCGTCCCTCTTACCGTGTCCCTCTTAGTGA
CACCACCTTTGAGCATGAGACAGGTAACGCGAGTGAGGAGGAGAGATACG
TCTTAATTATTGACTTTTGGCATCCAGAACTGACACCCGTGGAGAGGGCA
GCGTTAAGGGAGTTTTACGACTTGAGGAATACGTTCGAGGGGCGGACGGG
AGGAGGGGGAGTGGGGGAAGGGAGGCCACCACCGATGGAAAAGAGGAGGG
AGAAGAATGGAGGGTGGTTGGCAGGATTGTTTGGGGGATGA
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Coding sequence (CDS) from alignment at chr2:1279106..1280396-

>NO02G04720.1 ID=NO02G04720.1|Name=NO02G04720.1|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at chr2:1279106..1280396- (Nannochloropsis oceanica)
ATGATGCGTCATGTGGGGGGTTCCTTTCCTATCCTGCTCGTAGCCGTCCT
CCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGCATTTCTCCC
TCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGCTTCTCCCTCCTG
ACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGACCACAACCT
CAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCGTTCGTGCCT
TCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCTCCTACCGAC
CTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTTGACCGCAAA
GCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGGCCTTGGAAGATG
CGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGCGCGGGAAGG
GATCCGCGGGATTTCAAAGGCGACTCCAACGTCATGACCGTGATGGGCGC
GGGCTGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGAACGACCACG
TCTGTGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCTCTTTCTATA
CCTTTCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACCGGGGACAGG
TGTCCAACCCCACTCGGACGGTCGGAACTTTATCTTGACGCTTCATTTGG
GCCTCCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGGGTGGCGGAG
GAGAGGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATTGACACCACCTT
TGAGCATGAGACAGGTAACGCGAGTGAGGAGGAGAGATACGTCTTAATTA
TTGACTTTTGGCATCCAGAACTGACACCCGTGGAGAGGGCAGCGTTAAGG
GAGTTTTACGACTTGAGGAATACGTTCGAGGGGCGGACGGGAGGAGGGGG
AGTGGGGGAAGGGAGGCCACCACCGATGGAAAAGAGGAGGGAGAAGAATG
GAGGGTGGTTGGCAGGATTGTTTGGGGGATGA
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Synonyms
Publications