NO02G04390.1, NO02G04390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04390.1
Unique NameNO02G04390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr2:1188508..1190224 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1188508..1190224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04390.1 vs.
Match: WP_027299059.1 (cystathionine beta-lyase [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 455.3 bits (1170), Expect = 2.100e-124
Identity = 229/395 (57.97%), Postives = 279/395 (70.63%), Query Frame = 0 
Query:   35 GLGTRLTHLSRPSGHC--FVNPPVQRGSTVLFPTVKERNASWFERKRFEQALTYGINGSETHHMLEDMVANIEGGTRSQITSSGLSACTIALLAYTKAGDHVLLPDSIYGPVRGFAEGMLRRFHVDVEYYHASATGTDVAALLKENTTVVYIESPGSHTFEVVDVKAIASVARNHGAKSILDNTYGIHFFRPFEKGNVDISVQALTKYVVGHSDALLGAITVNTRENWEQVRQCVLELGEAVSPDDCWLAIRGARTLGVRLKYQMEAGLEVARYLSEAFPQDVVTVLHPAFPSCPGHDFYLRDYTGCCSLFSVVFHPMYSEEAMHAMLDSYRLFAIGASWGGFESLVLPTTNTITRSIEPAFPSLVGPTARFHVGLEEVEDLKADLRRGIDVLKA 428
            G GTRL HL R   H   FVNPP+ RGSTVL PTV  R  +     R EQAL YG+ G  THH LE+++A+IEGGTR QI SSGL+A T  LLAY  AGDH L+PDS+YGP RGFA+ MLR   ++V YY      + +AAL++ NT VVY ESPGSHTFE+ DV A+A VA   GAK + DNT+GIHFF+PF  G VD+S+QALTKYVVGHSD LLG+IT N   +WE+VR   L LG+  SPDDCWLA+RG R++ VRL++QM++GL VA + +E    +V  VLHPA P  PGH  + RDY+G CSLF VVF P +S EA HAM++S  LF IGASWGGFESL LPTT  +TR+      +  GP  RFH+GLEE  DL ADL +G+ VL+A
Sbjct:   10 GFGTRLAHLGRAGTHVHGFVNPPLYRGSTVLQPTVAARREAG--NHRLEQALIYGVLGGPTHHALENVIADIEGGTRCQIVSSGLAAVTTPLLAYLHAGDHCLMPDSVYGPARGFADSMLRPLGIEVTYYRPEIDESGLAALMRPNTKVVYGESPGSHTFEMQDVPALARVAHGRGAKLLFDNTWGIHFFQPFAHG-VDVSIQALTKYVVGHSDVLLGSITTNADADWERVRSTTLALGQYASPDDCWLALRGVRSMAVRLEHQMKSGLAVAAWFAER--PEVHQVLHPALPGAPGHALWKRDYSGACSLFGVVFKPEFSVEATHAMVESLALFGIGASWGGFESLALPTTGFVTRTAGSG--TFAGPVCRFHIGLEEPADLIADLEKGLAVLRA 397
The following BLAST results are available for this feature:
BLAST of NO02G04390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_027299059.12.100e-12457.97cystathionine beta-lyase [Rhodospirillales bacteri... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04390NO02G04390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04390.1NO02G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04390.1.cds1NO02G04390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04390.1.cds2NO02G04390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04390.1.cds3NO02G04390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04390.1.cds4NO02G04390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04390.1 ID=NO02G04390.1|Name=NO02G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGGCTTCAGCCTCCCCACCCCATGCCGCCACACCCACCGGACCCGAGGC
ACCACCATCGACAGATAAAGGCAACGATAAGCACTCCATCATTTTGCAGG
GTGGCCTAGGGACCCGCTTGACCCACCTGTCCCGCCCCTCTGGTCACTGC
TTCGTCAATCCACCAGTGCAGCGAGGTTCGACTGTGCTCTTTCCCACGGT
CAAGGAACGGAATGCTTCATGGTTTGAGCGCAAGCGCTTCGAGCAAGCCT
TGACGTACGGCATCAATGGCAGTGAGACCCACCACATGCTCGAAGATATG
GTCGCCAACATTGAAGGCGGCACCCGCTCTCAAATTACCAGCTCGGGGCT
CTCCGCCTGTACGATCGCCCTTCTTGCCTACACCAAAGCAGGAGACCATG
TCTTGCTCCCGGATTCTATCTACGGCCCCGTCCGTGGGTTTGCAGAAGGC
ATGCTCCGACGCTTTCATGTCGACGTGGAATATTACCATGCCTCCGCGAC
TGGGACAGACGTGGCTGCGTTGTTGAAAGAGAATACAACGGTCGTGTATA
TTGAGAGCCCTGGCTCGCATACCTTCGAGGTGGTGGATGTGAAGGCAATT
GCGAGTGTCGCGAGGAATCATGGAGCCAAGAGCATTTTGGATAACACGTA
TGGAATTCATTTTTTTCGACCATTTGAGAAGGGGAATGTGGACATCAGCG
TTCAGGCACTCACCAAATACGTTGTGGGTCATTCTGATGCCCTCCTCGGT
GCCATCACCGTCAACACCAGGGAGAATTGGGAGCAGGTACGACAATGTGT
CCTCGAGCTCGGGGAGGCTGTCTCACCCGACGATTGCTGGTTGGCTATTC
GTGGTGCGCGAACACTGGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGA
TTGGAGGTGGCCCGGTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTAC
TGTCCTCCACCCCGCGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCA
GAGACTACACGGGGTGCTGCTCCTTGTTTTCCGTTGTCTTCCACCCCATG
TACAGTGAAGAGGCCATGCATGCCATGTTGGATTCCTACCGGCTGTTTGC
AATCGGGGCGAGTTGGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCA
ATACGATCACTCGGTCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCA
ACGGCAAGGTTTCATGTGGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGA
CCTGAGGAGAGGAATCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGT
AG
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protein sequence of NO02G04390.1

>NO02G04390.1-protein ID=NO02G04390.1-protein|Name=NO02G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MASASPPHAATPTGPEAPPSTDKGNDKHSIILQGGLGTRLTHLSRPSGHC
FVNPPVQRGSTVLFPTVKERNASWFERKRFEQALTYGINGSETHHMLEDM
VANIEGGTRSQITSSGLSACTIALLAYTKAGDHVLLPDSIYGPVRGFAEG
MLRRFHVDVEYYHASATGTDVAALLKENTTVVYIESPGSHTFEVVDVKAI
ASVARNHGAKSILDNTYGIHFFRPFEKGNVDISVQALTKYVVGHSDALLG
AITVNTRENWEQVRQCVLELGEAVSPDDCWLAIRGARTLGVRLKYQMEAG
LEVARYLSEAFPQDVVTVLHPAFPSCPGHDFYLRDYTGCCSLFSVVFHPM
YSEEAMHAMLDSYRLFAIGASWGGFESLVLPTTNTITRSIEPAFPSLVGP
TARFHVGLEEVEDLKADLRRGIDVLKAFDNGGK*
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mRNA from alignment at chr2:1188508..1190224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04390.1 ID=NO02G04390.1|Name=NO02G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at chr2:1188508..1190224- (Nannochloropsis oceanica)
ATGGCTTCAGCCTCCCCACCCCATGCCGCCACACCCACCGGACCCGAGGC
ACCACCATCGACAGATAAAGGCAACGATAAGCACTCCATCATTTTGCAGG
GTGGCCTAGGGACCCGCTTGACCCACCTGTCCCGCCCCTCTGGTCACTGC
TTCGTCAATCCACCAGTGCAGCGAGGTTCGACTGTGCTCTTTCCCACGGT
CAAGGAACGGAATGCTTCATGGTTTGAGCGCAAGCGCTTCGAGCAAGCCT
TGACGTACGGCATCAATGGCAGTGAGGTATGCTTTAAAACTGGCAATTAC
AGAATCGACTCCATTTGCAGGGCACTCCTCTCTATGTCAACCGTTTTGCG
TGCCTCTTTCGCTTCCCCCCCCGCCGGTCCCTCACCTCCCTCCCACCCCA
TACAGACCCACCACATGCTCGAAGATATGGTCGCCAACATTGAAGGCGGC
ACCCGCTCTCAAATTACCAGCTCGGGGCTCTCCGCCTGTACGATCGCCCT
TCTTGCCTACACCAAAGCAGGAGACCATGTCTTGCTCCCGGATTCTATCT
ACGGCCCCGTCCGTGGGTTTGCAGAAGGCATGCTCCGACGCTTTCATGTC
GACGTGGAATATTACCATGCCTCCGCGACTGGGACAGACGTGGCTGCGTT
GTTGAAAGAGAATACAACGGTCGTGTATATTGAGAGCCCTGGCTCGCATA
CCTTCGAGGTGGTGGATGTGAAGGCAATTGCGAGTGTCGCGAGGAATCAT
GGAGCCAAGAGCATTTTGGATAACACGTATGGAATTCATTTTTTTCGACC
ATTTGAGAAGGGGAATGTGGACATCAGCGTTCAGGTATGCTCAACCTTAG
AAAAAGGAAAGAGAGTGGCAGTGCTGCTTGGAAAGGAAAGTTTTAGACAA
TATATTGTCATTACCCCTCTGATCCCACCTCAATCACTTTTCCTCCTTCC
ATCCCTCCCTCCCTTCCTCCTTCTGCCTACAAAGGCACTCACCAAATACG
TTGTGGGTCATTCTGATGCCCTCCTCGGTGCCATCACCGTCAACACCAGG
GAGAATTGGGAGCAGGTACGACAATGTGTCCTCGAGCTCGGGGAGGCTGT
CTCACCCGACGATTGCTGGTTGGCTATTCGTGGTGCGCGAACACTGGGAG
TCAGGCTGAAGTACCAGATGGAAGCAGGATTGGAGGTGGCCCGGTGGGTA
GGGAGGGAGAAGTGGAGGAGGGAGGGATGACAAGTGGGAAGCGATCGGAA
GGTGAGGAGACAGTCAAAGACACACACTAACCGACACTCTATTTCCAAAA
TCTGCACATTTTCCCAAACCAACACAAAGGTACCTGTCGGAGGCCTTCCC
TCAAGACGTCGTTACTGTCCTCCACCCCGCGTTCCCCTCCTGTCCCGGCC
ATGACTTCTACCTCAGAGACTACACGGGGTGCTGCTCCTTGTTTTCCGTT
GTCTTCCACCCCATGTACAGTGAAGAGGCCATGCATGCCATGTTGGATTC
CTACCGGCTGTTTGCAATCGGGGCGAGTTGGGGTGGCTTTGAGAGCTTGG
TGTTGCCGACGACCAATACGATCACTCGGTCGATTGAACCGGCGTTTCCT
TCGCTGGTGGGGCCAACGGCAAGGTTTCATGTGGGGTTGGAGGAGGTGGA
GGACTTGAAGGCGGACCTGAGGAGAGGAATCGATGTGTTAAAGGCGTTTG
ATAATGGCGGGAAGTAG
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Coding sequence (CDS) from alignment at chr2:1188508..1190224-

>NO02G04390.1 ID=NO02G04390.1|Name=NO02G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr2:1188508..1190224- (Nannochloropsis oceanica)
ATGGCTTCAGCCTCCCCACCCCATGCCGCCACACCCACCGGACCCGAGGC
ACCACCATCGACAGATAAAGGCAACGATAAGCACTCCATCATTTTGCAGG
GTGGCCTAGGGACCCGCTTGACCCACCTGTCCCGCCCCTCTGGTCACTGC
TTCGTCAATCCACCAGTGCAGCGAGGTTCGACTGTGCTCTTTCCCACGGT
CAAGGAACGGAATGCTTCATGGTTTGAGCGCAAGCGCTTCGAGCAAGCCT
TGACGTACGGCATCAATGGCAGTGAGACCCACCACATGCTCGAAGATATG
GTCGCCAACATTGAAGGCGGCACCCGCTCTCAAATTACCAGCTCGGGGCT
CTCCGCCTGTACGATCGCCCTTCTTGCCTACACCAAAGCAGGAGACCATG
TCTTGCTCCCGGATTCTATCTACGGCCCCGTCCGTGGGTTTGCAGAAGGC
ATGCTCCGACGCTTTCATGTCGACGTGGAATATTACCATGCCTCCGCGAC
TGGGACAGACGTGGCTGCGTTGTTGAAAGAGAATACAACGGTCGTGTATA
TTGAGAGCCCTGGCTCGCATACCTTCGAGGTGGTGGATGTGAAGGCAATT
GCGAGTGTCGCGAGGAATCATGGAGCCAAGAGCATTTTGGATAACACGTA
TGGAATTCATTTTTTTCGACCATTTGAGAAGGGGAATGTGGACATCAGCG
TTCAGGCACTCACCAAATACGTTGTGGGTCATTCTGATGCCCTCCTCGGT
GCCATCACCGTCAACACCAGGGAGAATTGGGAGCAGGTACGACAATGTGT
CCTCGAGCTCGGGGAGGCTGTCTCACCCGACGATTGCTGGTTGGCTATTC
GTGGTGCGCGAACACTGGGAGTCAGGCTGAAGTACCAGATGGAAGCAGGA
TTGGAGGTGGCCCGGTACCTGTCGGAGGCCTTCCCTCAAGACGTCGTTAC
TGTCCTCCACCCCGCGTTCCCCTCCTGTCCCGGCCATGACTTCTACCTCA
GAGACTACACGGGGTGCTGCTCCTTGTTTTCCGTTGTCTTCCACCCCATG
TACAGTGAAGAGGCCATGCATGCCATGTTGGATTCCTACCGGCTGTTTGC
AATCGGGGCGAGTTGGGGTGGCTTTGAGAGCTTGGTGTTGCCGACGACCA
ATACGATCACTCGGTCGATTGAACCGGCGTTTCCTTCGCTGGTGGGGCCA
ACGGCAAGGTTTCATGTGGGGTTGGAGGAGGTGGAGGACTTGAAGGCGGA
CCTGAGGAGAGGAATCGATGTGTTAAAGGCGTTTGATAATGGCGGGAAGT
AG
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Synonyms
Publications