NO02G04340.1, NO02G04340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04340.1
Unique NameNO02G04340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1078
Alignment locationchr2:1172004..1173481 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1172004..1173481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04340.1 vs.
Match: EWM30340.1 (60s ribosomal protein l37a [Nannochloropsis gaditana])

HSP 1 Score: 183.3 bits (464), Expect = 6.100e-43
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAKAEGV 169
            MGKRTKKVGICGKYGTRYGASLRKIIKKIE+SQHSKYTCVFCGKDNVKREVVGIWKCGSC KSMAGGAY+LSTAAAVQVRSTLARLRKAKAE V
Sbjct:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
The following BLAST results are available for this feature:
BLAST of NO02G04340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30340.16.100e-4395.7460s ribosomal protein l37a [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04340NO02G04340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04340.1NO02G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04340.1.cds1NO02G04340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04340.1.cds2NO02G04340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04340.1 ID=NO02G04340.1|Name=NO02G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp
GGGATTTCGGCGGTCTCGAGTCCTTCCTTCCGCGTGTGGTGGTGAAGCAC
ACTAGCGAGCGACGGATTAGGACGAGGGAGATGCGCGTCTACACCACCCG
AGTCTTTGTGGCTTGATGGAGCAGGACGGATGTTGTTGATTGTGTATTTC
CTTTTCACCCTCATCCTCACCCGTTCTTTACCCAACGGACGGCTCCCAGG
CATCCATCGCTCGCGCCGTACATGCAGGGCAAACAGGCACGCCTGGGCCG
TTCCTTGAGTCTCTAAGTTACGCCTAGTAAGAGGCACATTATTATGGTGC
CGTATGCCTGGTGGAGATGGCAGGACGGGAAGTCAGACGCTTTCGCTCGC
AACCCGCTGCTTCCCAGGCATCATCATCCAACAAAGAAGCAAGGCAACCA
TCACAGGCCCTCATCATGCTCATGCTCACTTTCGACCCCTCACTCACACC
ACACACACCACACGCCCCCATCTTAAATACCTTCGTCGCTATAAACCATC
TTGCAATCAACTTCAGTCAGGCAAAATGGGCAAGCGCACGAAGAAGGTTG
GGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAAGATC
ATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTTTCTG
CGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGCGGCT
CGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGCTGCC
GCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGGCTGA
GGGCGTCTAAGCACCCTTTCTTAGTTTGTCGTCAGTGGAGTGATCAGTCG
AAGAAGGAGGAAAAGAGGGATCGGGGGAAAGCGAGGGCTTTGGACGAAAC
AATGGTTGGCGTCGGTTTGAAACAAACCGTGACCGAATGGGTCGTCGGCG
CCTGCTTGGCATGAAAACTTATCACAAAGAAAGAATCACCCAGGCAGACA
TAAATGAAAAATGGTAGAAAGAAAGGGCGAAATATTACAGTTCGTTTTAC
CGATGAAAACGATACCCTCTAGGGAACA
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protein sequence of NO02G04340.1

>NO02G04340.1-protein ID=NO02G04340.1-protein|Name=NO02G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MPGGDGRTGSQTLSLATRCFPGIIIQQRSKATITGPHHAHAHFRPLTHTT
HTTRPHLKYLRRYKPSCNQLQSGKMGKRTKKVGICGKYGTRYGASLRKII
KKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAA
VQVRSTLARLRKAKAEGV*
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mRNA from alignment at chr2:1172004..1173481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04340.1 ID=NO02G04340.1|Name=NO02G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr2:1172004..1173481- (Nannochloropsis oceanica)
GGGATTTCGGCGGTCTCGAGTCCTTCCTTCCGCGTGTGGTGGTGAAGCAC
ACTAGCGAGCGACGGATTAGGACGAGGGAGATGCGCGTCTACACCACCCG
AGTCTTTGTGGCTTGATGGAGCAGGACGGATGTTGTTGATTGTGTATTTC
CTTTTCACCCTCATCCTCACCCGTTCTTTACCCAACGGACGGCTCCCAGG
CATCCATCGCTCGCGCCGTACATGCAGGGCAAACAGGCACGCCTGGGCCG
TTCCTTGAGTCTCTAAGTTACGCCTAGTAAGAGGCACATTATTATGGTGC
CGTATGCCTGGTGGAGATGGCAGGACGGGAAGTCAGACGCTTTCGCTCGC
AACCCGCTGCTTCCCAGGCATCATCATCCAACAAAGAAGCAAGGCAACCA
TCACAGGCCCTCATCATGCTCATGCTCACTTTCGACCCCTCACTCACACC
ACACACACCACACGCCCCCATCTTAAATACCTTCGTCGCTATAAACCATC
TTGCAATCAACTTCAGTCAGGCAAAATGGTACGTGGCACGGCGTAGAGGC
TCAAGTCAGGGAGGGAGGGGTGGGTGGGTGGGTGGGTGGGATGGCGAATG
ACGCGGACGACACGGTGATGGAGGTGTGTTGGGGCAGCACTGGCTCCAGC
ACAGTAGCAGCCGCAACAGTGGCAGCGATCGTAGCGGTCGTAGCTGTGGC
TTCGGTGGCAACATTGGCAACGGAAGGCTCAGGCGTATTACGGCCGGCCT
TGCAAATGGGAGCATTTCTCCTCTCCTGGTTCAGCCTCTTGTTCTTCTAC
CGAGCTTTCCATCTTGCGCGGTGCAGCTTTTATTGAAGTAGATTTCAATC
ATGACACAAGCTAATTATAACATCATTCACTCATCTTCTTTTATCCAACT
ACCCACAACCGTCAATCAAATAACACAGGGCAAGCGCACGAAGAAGGTTG
GGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAAGATC
ATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTTTCTG
CGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGCGGCT
CGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGCTGCC
GCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGGCTGA
GGGCGTCTAAGCACCCTTTCTTAGTTTGTCGTCAGTGGAGTGATCAGTCG
AAGAAGGAGGAAAAGAGGGATCGGGGGAAAGCGAGGGCTTTGGACGAAAC
AATGGTTGGCGTCGGTTTGAAACAAACCGTGACCGAATGGGTCGTCGGCG
CCTGCTTGGCATGAAAACTTATCACAAAGAAAGAATCACCCAGGCAGACA
TAAATGAAAAATGGTAGAAAGAAAGGGCGAAATATTACAGTTCGTTTTAC
CGATGAAAACGATACCCTCTAGGGAACA
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Coding sequence (CDS) from alignment at chr2:1172004..1173481-

>NO02G04340.1 ID=NO02G04340.1|Name=NO02G04340.1|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at chr2:1172004..1173481- (Nannochloropsis oceanica)
ATGCCTGGTGGAGATGGCAGGACGGGAAGTCAGACGCTTTCGCTCGCAAC
CCGCTGCTTCCCAGGCATCATCATCCAACAAAGAAGCAAGGCAACCATCA
CAGGCCCTCATCATGCTCATGCTCACTTTCGACCCCTCACTCACACCACA
CACACCACACGCCCCCATCTTAAATACCTTCGTCGCTATAAACCATCTTG
CAATCAACTTCAGTCAGGCAAAATGGGCAAGCGCACGAAGAAGGTTGGGA
TTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAAGATCATC
AAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTTTCTGCGG
GAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGCGGCTCGT
GCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGCTGCCGCT
GTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGGCTGAGGG
CGTCTAA
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Synonyms
Publications