|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:1103514..1105885 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04050.1 vs.
Match: EWM30299.1 (casein kinase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 638.3 bits (1645), Expect = 1.700e-179 Identity = 314/379 (82.85%), Postives = 339/379 (89.45%), Query Frame = 0
Query: 1 MTTSLSTQPPLPVGSQGQAISVISNKYRLSRRLGGGSFGDIYLGEYIPTSEKVAIKFEKHGARCPQLRHEYKVYRELQPCPGFGKVHYFGQIDCFNVMVMELLGYSLEDLFNKCGRRFSLRTVLQLADQVLERVEVMHNRHLIHRDIKPANFVVGHGPTAAIVHCIDFGLSKRYRHPRTLQHIAYRDGRSLTGTPRYASINNHLGIEQSRRDDLESIGYVLVYFLRGILPWQGLKAKTASKKYKMIMEKKQTVSVSELCQGCPAEFAHYLTYCRSLSFDGKPDMGYLRGLFRDLYVQQGFGSYSSTPSTESTIPSHMYTRHAGVVTGSAALLAASAGPIQWDWDRFVNPAYYAATPAPAT-TGVGGGRGGDKGRGVAGA 379
MT++ S+QPPLPVGSQGQAI+VISNKYRLSRRLGGGSFGDIYLGEYIPTSEKVA+KFEKHGARCPQLRHEYKVYRELQ C GFGKVHYFGQ+DC+NVMVMELLGYSLEDLFNKCGRRFSLRTVLQLADQVLERVE+MHNRHLIHRDIKPANFVVGHGP +AIVHCIDFGLSKRYRHPRTLQHIAYR+GRSLTGTPRYASINNHLGIEQSRRDDLESIGYVL+YFLRGILPWQGLKAKTASKKYKMIMEKKQ+VSV+ELC GCP +FA YL+YCRSLSFDG PDM YLRGLFRDLYVQQGFG + S P +T+PS + T + GSAA LAASAGPI+WDWDRFV+PAYY+A+ + G G KGR V A
Sbjct: 1 MTSTSSSQPPLPVGSQGQAIAVISNKYRLSRRLGGGSFGDIYLGEYIPTSEKVAVKFEKHGARCPQLRHEYKVYRELQHCAGFGKVHYFGQLDCYNVMVMELLGYSLEDLFNKCGRRFSLRTVLQLADQVLERVEIMHNRHLIHRDIKPANFVVGHGPASAIVHCIDFGLSKRYRHPRTLQHIAYREGRSLTGTPRYASINNHLGIEQSRRDDLESIGYVLIYFLRGILPWQGLKAKTASKKYKMIMEKKQSVSVAELCHGCPVQFAEYLSYCRSLSFDGNPDMFYLRGLFRDLYVQQGFGVHQSPP---ATMPSMIATGGRPTI-GSAAALAASAGPIEWDWDRFVSPAYYSASAGGGVPSAADGANVGVKGRAVVVA 375
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04050.1 ID=NO02G04050.1|Name=NO02G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp
GCGAGCGAAAATCTTTGAGGCGATGTGAAGTGTGGCAATCCCGACTTGCT
CTATCTCAAAAAGGAGGCGGCAGAAAGTACATTTCAATTAATTTGTGAAG
CCAGCGGCGTCAAGCTTATGCAGAGATGTCCATCACTTGTGTGTCGCTTT
GCGTTGCGTGCATCACCCCCCGTTTGCGTACTTCCAAACAATCGCGCTAC
CGCCGCTTGGTTTGCGAACTGTCGTCGCTATAGGGAGACGTTGGAAGCAA
GGCGACAAAAGCAGCGACGGCTTTTCCACCGCCTTGTGGCCCACCCGTAA
CAATACAAACAAGGCACGCCGCAAACATCCTGGCAGTATGTCAGCCCTGA
ATTTCTTTGGTCGTTGCCTGCCCGCAGTTGTGGCCTCCTGGCCTTTTTCC
AAAGCAACAAAGCATCGGGTCTCAATATGGGGGTTTCGTCTTGCTTGATT
GAAGGCGGGGCGAAGCTTTATCGTGCACTCGGAGCGAGGACGGTTCACAC
GACCAAGCATGTGTTGCCCCCCACCGTCTGTGTCATAGCAGTCCTGTCAT
TCGCTTTCTTACACGTTCCTCCTATTTTGTCCACACCCACACATTTACAG
GGAGGGCGAGGCGGCGACGGGATGGCCTCCTTCTGAATCCCGAACCGACT
TCGCATCAGGCTGCCCCCTTCTCCGCTACACACGTGCACCTCAACGCAAG
ACGACAGCGACGCCACTGTCTGCTGACCGCGGGTTGACAAGAAGAGGGGG
ATAGGAAGATATAATCGGCGGAAGAGGGACCGCGGACAGAGACGCTATCT
GTAGAGAACAAGAGGGAGCAAGCATTGGCGCGGAGCGAGGAAAAGAACTT
GTCAAATTAGTTTGATATCGCACCAGCTACAACGCGCCACAACGCCCACC
GAAAACACACAATAATTAGAACGATGACCACATCTTTGTCCACGCAGCCA
CCTTTGCCGGTTGGCTCGCAGGGGCAGGCCATCTCGGTCATCAGCAACAA
GTACCGCCTCTCGCGACGATTGGGGGGAGGGTCCTTCGGTGACATCTACC
TAGGTGAATATATCCCTACCAGCGAGAAGGTTGCGATTAAGTTCGAGAAG
CATGGTGCACGCTGCCCTCAGTTGAGACACGAATATAAGGTATACAGGGA
GCTGCAACCCTGCCCGGGGTTCGGGAAAGTTCATTACTTCGGACAGATTG
ATTGCTTCAATGTGATGGTCATGGAGTTGCTAGGGTATTCTCTCGAAGAC
TTGTTTAACAAATGCGGTCGACGCTTTTCACTGCGCACGGTTTTGCAGCT
GGCGGACCAGGTGCTGGAGCGCGTGGAAGTAATGCATAACAGGCACTTGA
TCCACCGGGATATTAAGCCCGCCAATTTCGTCGTGGGCCATGGCCCAACT
GCAGCCATCGTTCACTGCATCGACTTCGGGCTGAGCAAGCGGTATCGCCA
CCCCCGCACCCTACAACATATCGCCTACCGGGACGGGCGTTCCTTAACCG
GTACCCCGCGTTATGCCTCCATCAACAACCACCTAGGCATCGAGCAATCA
CGAAGGGATGATCTTGAATCAATCGGCTACGTCCTCGTCTACTTCCTTCG
GGGCATCCTTCCCTGGCAAGGCCTCAAGGCCAAAACCGCCAGCAAGAAAT
ACAAAATGATTATGGAAAAAAAACAGACCGTATCAGTTTCCGAGCTCTGC
CAAGGCTGCCCCGCGGAATTCGCGCACTACCTGACATACTGCCGCTCCCT
CTCCTTCGACGGGAAGCCTGATATGGGATACCTCCGCGGTCTCTTTCGAG
ACCTTTATGTTCAACAAGGCTTTGGATCTTATTCAAGCACCCCCTCCACT
GAATCCACCATCCCGTCCCACATGTATACGAGGCATGCAGGCGTTGTCAC
CGGGTCCGCGGCGTTGTTGGCAGCATCAGCTGGTCCGATTCAATGGGATT
GGGATCGCTTCGTGAATCCTGCCTACTATGCCGCTACTCCTGCTCCTGCT
ACCACAGGGGTGGGGGGGGGCAGAGGAGGGGACAAGGGGCGGGGGGTGGC
AGGTGCCGGGGTGGCGAGTGGAGGGAAGGTTCCGGCGGCAGGAGGAGGAA
GAGGAGGAGGGCGGATAGGGGCAGGAGGGGGGATGTGA back to topprotein sequence of NO02G04050.1 >NO02G04050.1-protein ID=NO02G04050.1-protein|Name=NO02G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MTTSLSTQPPLPVGSQGQAISVISNKYRLSRRLGGGSFGDIYLGEYIPTS
EKVAIKFEKHGARCPQLRHEYKVYRELQPCPGFGKVHYFGQIDCFNVMVM
ELLGYSLEDLFNKCGRRFSLRTVLQLADQVLERVEVMHNRHLIHRDIKPA
NFVVGHGPTAAIVHCIDFGLSKRYRHPRTLQHIAYRDGRSLTGTPRYASI
NNHLGIEQSRRDDLESIGYVLVYFLRGILPWQGLKAKTASKKYKMIMEKK
QTVSVSELCQGCPAEFAHYLTYCRSLSFDGKPDMGYLRGLFRDLYVQQGF
GSYSSTPSTESTIPSHMYTRHAGVVTGSAALLAASAGPIQWDWDRFVNPA
YYAATPAPATTGVGGGRGGDKGRGVAGAGVASGGKVPAAGGGRGGGRIGA
GGGM* back to topmRNA from alignment at chr2:1103514..1105885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04050.1 ID=NO02G04050.1|Name=NO02G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp|location=Sequence derived from alignment at chr2:1103514..1105885- (Nannochloropsis oceanica)
GCGAGCGAAAATCTTTGAGGCGATGTGAAGTGTGGCAATCCCGACTTGCT
CTATCTCAAAAAGGAGGCGGCAGAAAGTACATTTCAATTAATTTGTGAAG
CCAGCGGCGTCAAGCTTATGCAGAGATGTCCATCACTTGTGTGTCGCTTT
GCGTTGCGTGCATCACCCCCCGTTTGCGTACTTCCAAACAATCGCGCTAC
CGCCGCTTGGTTTGCGAACTGTCGTCGCTATAGGGAGACGTTGGAAGCAA
GGCGACAAAAGCAGCGACGGCTTTTCCACCGCCTTGTGGCCCACCCGTAA
CAATACAAACAAGGCACGCCGCAAACATCCTGGCAGTATGTCAGCCCTGA
ATTTCTTTGGTCGTTGCCTGCCCGCAGTTGTGGCCTCCTGGCCTTTTTCC
AAAGCAACAAAGCATCGGGTCTCAATATGGGGGTTTCGTCTTGCTTGATT
GAAGGCGGGGCGAAGCTTTATCGTGCACTCGGAGCGAGGACGGTTCACAC
GACCAAGCATGTGTTGCCCCCCACCGTCTGTGTCATAGCAGTCCTGTCAT
TCGCTTTCTTACACGTTCCTCCTATTTTGTCCACACCCACACATTTACAG
GGAGGGCGAGGCGGCGACGGGATGGCCTCCTTCTGAATCCCGAACCGACT
TCGCATCAGGCTGCCCCCTTCTCCGCTACACACGTGCACCTCAACGCAAG
ACGACAGCGACGCCACTGTCTGCTGACCGCGGGTTGACAAGAAGAGGGGG
ATAGGAAGATATAATCGGCGGAAGAGGGACCGCGGACAGAGACGCTATCT
GTAGAGAACAAGAGGGAGCAAGCATTGGCGCGGAGCGAGGAAAAGAACTT
GTCAAATTAGTTTGATATCGCACCAGCTACAACGCGCCACAACGCCCACC
GAAAACACACAATAATTAGAACGATGACCACATCTTTGTCCACGCAGCCA
CCTTTGCCGGTTGGCTCGCAGGGGCAGGCCATCTCGGTCATCAGCAACAA
GTACCGCCTCTCGCGACGATTGGGGGGAGGGTCCTTCGGTGACATCTACC
TAGGTGAATATATCCCTACCAGCGAGAAGGTTGCGATTAAGTTCGAGAAG
CATGGTGCACGCTGCCCTCAGTTGAGACACGAATATAAGGTATACAGGGA
GCTGCAACCCTGCCCGGGGTTCGGGAAAGTTCATTACTTCGGACAGATTG
ATTGCTTCAATGTGATGGTCATGGAGTTGCTAGGGTATTCTCTCGAAGAC
TTGTTTAACAAATGCGGTCGACGCTTTTCACTGCGCACGGTTTTGCAGCT
GGCGGACCAGGTGCTGGAGCGCGTGGAAGTAATGCATAACAGGCACTTGA
TCCACCGGGATATTAAGGTACGTACGTAGATTTGCATGCGTGTGGAGGAG
CAACTTTAGGGGGCCTGAGAGGGGTGTGTGTATTACGTGTAGGAGGGCAT
TGATTGCCGGGGTAGTGTTGTTGTGACTTATATTGTTTGTCATCGGCTCC
TTCCGACTTCTTTCCGCTTTTCCCCTTCCCGCTCTTTCTTCCTCCCTGAC
ATAACACACTCACCCTCCCTCTCCTCCCTCCCTCCACCCTCTTCGTCTCA
GCCCGCCAATTTCGTCGTGGGCCATGGCCCAACTGCAGCCATCGTTCACT
GCATCGACTTCGGGCTGAGCAAGCGGTATCGCCACCCCCGCACCCTACAA
CATATCGCCTACCGGGACGGGCGTTCCTTAACCGGTACCCCGCGTTATGC
CTCCATCAACAACCACCTAGGCATCGAGCAATCACGAAGGGATGATCTTG
AATCAATCGGCTACGTCCTCGTCTACTTCCTTCGGGGCATCCTTCCCTGG
CAAGGCCTCAAGGCCAAAACCGCCAGCAAGAAATACAAAATGATTATGGA
AAAAAAACAGACCGTATCAGTTTCCGAGCTCTGCCAAGGCTGCCCCGCGG
AATTCGCGCACTACCTGACATACTGCCGCTCCCTCTCCTTCGACGGGAAG
CCTGATATGGGATACCTCCGCGGTCTCTTTCGAGACCTTTATGTTCAACA
AGGCTTTGGATCTTATTCAAGCACCCCCTCCACTGAATCCACCATCCCGT
CCCACATGTATACGAGGCATGCAGGCGTTGTCACCGGGTCCGCGGCGTTG
TTGGCAGCATCAGCTGGTCCGATTCAATGGGATTGGGATCGCTTCGTGAA
TCCTGCCTACTATGCCGCTACTCCTGCTCCTGCTACCACAGGGGTGGGGG
GGGGCAGAGGAGGGGACAAGGGGCGGGGGGTGGCAGGTGCCGGGGTGGCG
AGTGGAGGGAAGGTTCCGGCGGCAGGAGGAGGAAGAGGAGGAGGGCGGAT
AGGGGCAGGAGGGGGGATGTGA back to topCoding sequence (CDS) from alignment at chr2:1103514..1105885- >NO02G04050.1 ID=NO02G04050.1|Name=NO02G04050.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr2:1103514..1105885- (Nannochloropsis oceanica)
ATGACCACATCTTTGTCCACGCAGCCACCTTTGCCGGTTGGCTCGCAGGG
GCAGGCCATCTCGGTCATCAGCAACAAGTACCGCCTCTCGCGACGATTGG
GGGGAGGGTCCTTCGGTGACATCTACCTAGGTGAATATATCCCTACCAGC
GAGAAGGTTGCGATTAAGTTCGAGAAGCATGGTGCACGCTGCCCTCAGTT
GAGACACGAATATAAGGTATACAGGGAGCTGCAACCCTGCCCGGGGTTCG
GGAAAGTTCATTACTTCGGACAGATTGATTGCTTCAATGTGATGGTCATG
GAGTTGCTAGGGTATTCTCTCGAAGACTTGTTTAACAAATGCGGTCGACG
CTTTTCACTGCGCACGGTTTTGCAGCTGGCGGACCAGGTGCTGGAGCGCG
TGGAAGTAATGCATAACAGGCACTTGATCCACCGGGATATTAAGCCCGCC
AATTTCGTCGTGGGCCATGGCCCAACTGCAGCCATCGTTCACTGCATCGA
CTTCGGGCTGAGCAAGCGGTATCGCCACCCCCGCACCCTACAACATATCG
CCTACCGGGACGGGCGTTCCTTAACCGGTACCCCGCGTTATGCCTCCATC
AACAACCACCTAGGCATCGAGCAATCACGAAGGGATGATCTTGAATCAAT
CGGCTACGTCCTCGTCTACTTCCTTCGGGGCATCCTTCCCTGGCAAGGCC
TCAAGGCCAAAACCGCCAGCAAGAAATACAAAATGATTATGGAAAAAAAA
CAGACCGTATCAGTTTCCGAGCTCTGCCAAGGCTGCCCCGCGGAATTCGC
GCACTACCTGACATACTGCCGCTCCCTCTCCTTCGACGGGAAGCCTGATA
TGGGATACCTCCGCGGTCTCTTTCGAGACCTTTATGTTCAACAAGGCTTT
GGATCTTATTCAAGCACCCCCTCCACTGAATCCACCATCCCGTCCCACAT
GTATACGAGGCATGCAGGCGTTGTCACCGGGTCCGCGGCGTTGTTGGCAG
CATCAGCTGGTCCGATTCAATGGGATTGGGATCGCTTCGTGAATCCTGCC
TACTATGCCGCTACTCCTGCTCCTGCTACCACAGGGGTGGGGGGGGGCAG
AGGAGGGGACAAGGGGCGGGGGGTGGCAGGTGCCGGGGTGGCGAGTGGAG
GGAAGGTTCCGGCGGCAGGAGGAGGAAGAGGAGGAGGGCGGATAGGGGCA
GGAGGGGGGATGTGA back to top
|