NO02G03860.1, NO02G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03860.1
Unique NameNO02G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length648
Alignment locationchr2:1052028..1052675 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1052028..1052675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03860.1 vs.
Match: EWM30280.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 8.800e-71
Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 0 
Query:   11 GMDDDEDKEDTPCQQQSKGSTSSSQP-PHPLPPASASTNTTTTS----STFITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKY 215
            G+    +    P       S+SSS P  H    +S S +++TTS     + ITPKGKEG RLKFE+ G+T+YEWEQTLEDVS+++TPP  VKASML CTI  SHLTLGLK A HPFIDE T GSVKA ESFWTLEDGELH+LLQKA KGEVWPSALAGRG+LDP+TSE+VRKQLMLERFQEENPGFDFSNA FNGAVPDP+TFLGGVKY
Sbjct:    6 GVQRQSNSAHDPATPSLAPSSSSSWPRQHTSWESSTSESSSTTSYPTACSVITPKGKEG-RLKFEYDGRTIYEWEQTLEDVSIFVTPPSGVKASMLRCTIASSHLTLGLKEAGHPFIDEATGGSVKAAESFWTLEDGELHVLLQKAKKGEVWPSALAGRGSLDPVTSESVRKQLMLERFQEENPGFDFSNAEFNGAVPDPETFLGGVKY 213
The following BLAST results are available for this feature:
BLAST of NO02G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30280.18.800e-7169.86CS-like domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03860NO02G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03860.1NO02G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03860.1.cds1NO02G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03860.1 ID=NO02G03860.1|Name=NO02G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACGACGAGGA
CAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACCTCCTCAT
CCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAACACCACC
ACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGCACCGGCT
CAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAAACGCTGG
AAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGCCAGCATG
CTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGAAAGGGGC
ACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAGGCGACTG
AAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCTACAGAAA
GCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGGGCGCGTT
GGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTGGAGAGAT
TTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTTCAATGGA
GCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACACGTAG
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protein sequence of NO02G03860.1

>NO02G03860.1-protein ID=NO02G03860.1-protein|Name=NO02G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVDYSRFDKIGMDDDEDKEDTPCQQQSKGSTSSSQPPHPLPPASASTNTT
TTSSTFITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASM
LYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQK
ASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNG
AVPDPQTFLGGVKYT*
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mRNA from alignment at chr2:1052028..1052675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03860.1 ID=NO02G03860.1|Name=NO02G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at chr2:1052028..1052675+ (Nannochloropsis oceanica)
ATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACGACGAGGA
CAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACCTCCTCAT
CCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAACACCACC
ACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGCACCGGCT
CAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAAACGCTGG
AAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGCCAGCATG
CTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGAAAGGGGC
ACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAGGCGACTG
AAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCTACAGAAA
GCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGGGCGCGTT
GGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTGGAGAGAT
TTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTTCAATGGA
GCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACACGTAG
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Coding sequence (CDS) from alignment at chr2:1052028..1052675+

>NO02G03860.1 ID=NO02G03860.1|Name=NO02G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr2:1052028..1052675+ (Nannochloropsis oceanica)
ATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACGACGAGGA
CAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACCTCCTCAT
CCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAACACCACC
ACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGCACCGGCT
CAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAAACGCTGG
AAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGCCAGCATG
CTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGAAAGGGGC
ACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAGGCGACTG
AAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCTACAGAAA
GCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGGGCGCGTT
GGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTGGAGAGAT
TTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTTCAATGGA
GCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACACGTAG
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Synonyms
Publications