NO02G03840.1, NO02G03840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03840.1
Unique NameNO02G03840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr2:1045807..1047626 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1045807..1047626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03840.1 vs.
Match: EWM30205.1 (protein mpv17 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 2.800e-67
Identity = 135/205 (65.85%), Postives = 168/205 (81.95%), Query Frame = 0 
Query:    1 MAFMHVKRYPMLFKAVLPGTLAIACGDMLCQRLEGKIEICLERTTRMAITGALIVTPSAYYLGSKIERIIPKANTTFTTIAKAGLNATCSVFFIIGSFCGNNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGVVPQSVAATAAFSVLWNVRMSSALNMKTPASETALAKEERN--RRVSAMRLAVGGLQKESGGGS 204
            MA  +++R+PML  AVLPGTLAIACGD+LCQ+LEGK EIC ERT RMA+TGA++VTP ++YLGSKI+R++PK +T   T+AK+GLNA CSV FIIGSFCGNNLLQGRG +VLRAQL ERLLPT A+G+AYW+GANLLLFSG+VPQ+V AT  FS++WNV+MSSALN KTP +E ALA+E+ +  RR      A+G +Q+E    S
Sbjct:    1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSS 205
The following BLAST results are available for this feature:
BLAST of NO02G03840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30205.12.800e-6765.85protein mpv17 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03840NO02G03840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03840.1NO02G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03840.1.cds1NO02G03840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03840.1.cds2NO02G03840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03840.1 ID=NO02G03840.1|Name=NO02G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp
CCGAGAGTCCCTTTCCCGCACTCTCCAAAGCAAGCCTGCAGTTTCCCTAC
CACCTTACGCACTTGCTAGGGTCCCTCAAACATGCAAGGACAATATCATA
TCACACTCTCACGTGTCCTTTAAGCAATGTTGATCAAGTCAACCGAACTC
AAGAAGGGGGCAACTAAATCCATCTTGCATTCAATAATGCGTCACAAACC
TCAAATCTAGGAAAAAGAGGCATGGAAACATGGAAACGTGGCATGCAGCA
GGTCGTGTGGAGCTCGCACGCTGACCTCTTTTCAGTTGCAAAGTTCGCTC
ACTTATTGTGCGGCACATGACTAGGCCCCGCTCGCTCGCTATATCGTTTT
CCTTGAGATGATGGTCCCTGTGATTGAAACCCATCAATGGCAGCCAAGAG
CGAGGCATGACATCACAGTTGTGACCACAACAACGAGAAGCTCAAGGACG
CATACGCATGTCTTTTCCCTGGCCCTTTCCCTTCTACACCCAACCGCCCA
CAGCAAAAACCATTCACGCCAGTCGTCAGCCACCATCGTTACCGCTGGCA
CTCGCGGCCAGCTTCATCAAGGTCTTTGAACCGCCAGATCTGTCCTCGTT
ATCGTCGGCCGTGCCCTCAAGAAAATAAATGGCGTTCATGCACGTAAAAC
GCTACCCCATGCTCTTCAAAGCCGTCCTGCCTGGGACGCTTGCTATTGCC
TGCGGCGACATGTTGTGTCAGCGGCTGGAAGGGAAGATAGAGATTTGTCT
AGAGCGGACAACACGAATGGCAATAACAGGAGCTTTGATCGTGACTCCAT
CAGCGTATTATTTGGGCTCCAAGATTGAGCGCATCATTCCCAAAGCCAAC
ACCACCTTCACCACCATCGCCAAAGCTGGGCTTAATGCCACGTGCTCTGT
CTTCTTCATCATCGGAAGCTTCTGTGGAAACAACCTGTTACAAGGTCGTG
GATTCGAGGTACTGCGTGCACAACTCAGTGAGCGCCTCTTGCCCACCGCA
GCCTCAGGTGTCGCATATTGGACAGGCGCGAATCTCCTACTCTTTTCGGG
GGTGGTCCCGCAATCCGTTGCTGCTACTGCTGCATTTTCCGTGTTATGGA
ATGTACGGATGAGCAGTGCATTGAACATGAAGACGCCTGCATCGGAGACG
GCATTGGCGAAGGAGGAGCGGAATCGACGGGTGAGTGCCATGCGGCTGGC
AGTCGGGGGGTTGCAGAAGGAGAGTGGTGGTGGGAGTGGCAGCAGCATAA
GCAGTAGCACCAATAGAAGACGTGGTGGTGGCAAGGCATGTGAGTCGCAA
AATACCGAGTTGTTGCAGTAAGAGATCGGTCAATAGAAGACGTGGTGGTG
GCA
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protein sequence of NO02G03840.1

>NO02G03840.1-protein ID=NO02G03840.1-protein|Name=NO02G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MAFMHVKRYPMLFKAVLPGTLAIACGDMLCQRLEGKIEICLERTTRMAIT
GALIVTPSAYYLGSKIERIIPKANTTFTTIAKAGLNATCSVFFIIGSFCG
NNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGVVPQSVAAT
AAFSVLWNVRMSSALNMKTPASETALAKEERNRRVSAMRLAVGGLQKESG
GGSGSSISSSTNRRRGGGKACESQNTELLQ*
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mRNA from alignment at chr2:1045807..1047626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03840.1 ID=NO02G03840.1|Name=NO02G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at chr2:1045807..1047626+ (Nannochloropsis oceanica)
CCGAGAGTCCCTTTCCCGCACTCTCCAAAGCAAGCCTGCAGTTTCCCTAC
CACCTTACGCACTTGCTAGGGTCCCTCAAACATGCAAGGACAATATCATA
TCACACTCTCACGTGTCCTTTAAGCAATGTTGATCAAGTCAACCGAACTC
AAGAAGGGGGCAACTAAATCCATCTTGCATTCAATAATGCGTCACAAACC
TCAAATCTAGGAAAAAGAGGCATGGAAACATGGAAACGTGGCATGCAGCA
GGTCGTGTGGAGCTCGCACGCTGACCTCTTTTCAGTTGCAAAGTTCGCTC
ACTTATTGTGCGGCACATGACTAGGCCCCGCTCGCTCGCTATATCGTTTT
CCTTGAGATGATGGTCCCTGTGATTGAAACCCATCAATGGCAGCCAAGAG
CGAGGCATGACATCACAGTTGTGACCACAACAACGAGAAGCTCAAGGACG
CATACGCATGTCTTTTCCCTGGCCCTTTCCCTTCTACACCCAACCGCCCA
CAGCAAAAACCATTCACGCCAGTCGTCAGCCACCATCGTTACCGCTGGCA
CTCGCGGCCAGCTTCATCAAGGTGAGCTTGTGGCCCAGGGCGCCAAGGGA
GTGCTGGCGCCCCCTTTTCGTGCTGGTGGGCCCTGAGCCCTTAAGGTCTG
TGGGTTTTGAAACTGACTCTGCCCCATTTCTTTTATCCCATACACCCAGG
TCTTTGAACCGCCAGATCTGTCCTCGTTATCGTCGGCCGTGCCCTCAAGA
AAATAAATGGCGTTCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGC
CGTCCTGCCTGGGACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGC
GGCTGGAAGGGAAGATAGAGATTTGTCTAGAGCGGACAACACGAATGGCA
ATAACAGGAGCTTTGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAA
GATTGAGCGCATCATTCCCAAAGGTAAGCAGGGGATGGGGTGAAGATAAG
AGCGGCCGAGTGATAGTGCTTTTTGTGTGCACCTTCGTATTTTTAAGAAT
TGTAATTGGGGTGCGGTATATTCATGATGTGGATGGCTAGGTATGCATAT
GAAGGTTGATGCCTTTTCGTGTGCTTGCGGATGACGGTCCTGGTAAATGG
GAGGGAGGAGATGGGGGGGACGTTCTCTGCCCCATCAGCCCAGTACGTCC
TAGTCTACTTTGTTTTCCCCACCTCCTTTTCCAAAGCCAAAGGATCCAAT
CACTCCAAAGCATATTTCGTTAATCCCGTACTTACCCCCCTTCCTCCTTT
CCGCTGTTGAAGCCAACACCACCTTCACCACCATCGCCAAAGCTGGGCTT
AATGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTGGAAACAA
CCTGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTCAGTGAGC
GCCTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGGCGCGAAT
CTCCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTACTGCTGC
ATTTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAACATGAAGA
CGCCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCGACGGGTG
AGTGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTGGTGGTGG
GAGTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGTGGTGGCA
AGGCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAAGAGATCGGTCAA
TAGAAGACGTGGTGGTGGCA
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Coding sequence (CDS) from alignment at chr2:1045807..1047626+

>NO02G03840.1 ID=NO02G03840.1|Name=NO02G03840.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr2:1045807..1047626+ (Nannochloropsis oceanica)
ATGGCGTTCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGCCGTCCT
GCCTGGGACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGCGGCTGG
AAGGGAAGATAGAGATTTGTCTAGAGCGGACAACACGAATGGCAATAACA
GGAGCTTTGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAAGATTGA
GCGCATCATTCCCAAAGCCAACACCACCTTCACCACCATCGCCAAAGCTG
GGCTTAATGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTGGA
AACAACCTGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTCAG
TGAGCGCCTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGGCG
CGAATCTCCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTACT
GCTGCATTTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAACAT
GAAGACGCCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCGAC
GGGTGAGTGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTGGT
GGTGGGAGTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGTGG
TGGCAAGGCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAA
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Synonyms
Publications