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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:981666..985264 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03660.1 vs.
Match: EWM30269.1 (hypothetical protein Naga_100003g113 [Nannochloropsis gaditana]) HSP 1 Score: 139.4 bits (350), Expect = 2.400e-29 Identity = 140/373 (37.53%), Postives = 180/373 (48.26%), Query Frame = 0
Query: 21 PQHPIVEVVPPCPLMLIRRSGIASQPISMGDDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI-PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHKLSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVVTGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIEENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPAHAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPAASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELN 393
PQ + + CPL ++R S SQ IS + + +PS + A + A + P + RT SDSCI P APRMSSSEPNPLFLE +P L+LPPPSV +G + ++Y + LSSS+RERMG+LA F + S +VG VG ++ + T L EG K+ +S S LS+L NK + + A G ++ G S LPAMQ HT + +A A A G + P T STAATTASSV S DGL EDV S +SPA S +SS S SQAS E EE+A PSADA +GPF LEEL+
Sbjct: 18 PQQQVPDKRLSCPLTILRLSQTVSQTISARYIWESKGGYCR-DKRKTSSPSCAVNVAHVSPAPVEVTRPAITRTFSDSCITPSAPRMSSSEPNPLFLESLPHLTLPPPSVDDGDARSIGGDRYNDRRA---LSSSMRERMGTLAGGFKLFASPSSSLTVG----VGAAGLQAESTQGSQAHTSFL---EGLTEKSP---TSRSSMVLSILANKTGAGSVAKKDGLCAPSVQHTGH--------------SAPLPAMQGRTLVEVAHTTIKGPVAEANIGDAFAKGVM---EGPIVCHGVTPSTAATTASSV-SILDGLKEVEDVFSTISPARSIVSSLSGSQASQNMEEGEEDASEPPSADADVGPFELEELH 358
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3599bp GGAGAAGGAGGAGGAATGGAGGGGGGGAGATGGGATTTCACGTGCCGGCC ATCCGAGAAAACCTGTAAACACTCCATATCTCGAGATGGCAATGGGGCAC GCAACATCCTGCGGGTGTATGAGAGTGAGGTCCGTGGAGAAGATCGTCCA CATGAGCTCCGGTATGACCAACCGCGGCAGGTGGTGCAGACGCTGTATAA GTTGTCTCCCCTCTGACCTCCTCTTTTTTTCCCCTCCTCCTAGCCCTGTA TGGGCCATCGGAGGACTCATGCTGGTGCAAAACCTGTTAAAGCCATTTAA AACTCGGCAAAATAAGGGGAGAATAAAATTTTGTTGGTAATAAGGCTTTC CGTCGAGTGTTATCCTAAGAGGAGGCATTCGTCTGTGAGGCTTTGTGTTT GCATTTGTCTGCAGATAGTTTGCACGCGATAATTTGGATTGTAGGAAACT ACGGAAACTACACTACACTGTGATCTTGATCTTGCCTTGCATTTTGTCCC GCACTGCAAACGAACACACTCTTGTCGCACTCACACCCGCGCACAGAAAG ACAATGACCAGACATGTATTCTATTTGGAGTGCGAATCGTACCCTTCCGT AATCTCGCCGGGCGCAAGTAGAGCAAACGTTCATTATCGCTCCGAGTCCG GCCTCCAAGTCGTGCAGTTGTTTCTCTTATTTGCTTCTAACCACGGCTCC CCACCCCCAACCCACCTCCCACTCGCCAACACCAACACAGCGCCCCAGGC ACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCGTTTTGCATCCTTTC CACGAGCATCATCAAGAACACCAGCAGCGTACACATGTGCCGGCGGCACC AGAAAATCTATTCGTGACACCGGCTCTGCACATAGACAGTAGAAGCAGCA GTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGTTCGTGATAAAGCGC TGACAGCTTTAAGCAAGAAACATAATCTCTATTCAAATCAAGCAGCGCAG CACAACCAACCATCATCAACCGAGCCTTATATTCTGTCGGAGGTGACATT ATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGCGCTTCACAGAGCTC TTACACGCAATATATCTTACGGCGCTGTCATCACTGTTGCTCCATTGAGC AACCTTCCTCCGAAAAGTAATGAAACACGCGCATTCGCCTGTCGTCCCCT CTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAACATCCAATTGTTGAA GTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGGTCCGGGATTGCCTC TCAGCCGATTAGCATGGGTGACGACAACAACAATGATAACAACATCATCA GCCTGGGGGAGATGGGCCATGACACGCCCTCGACAACCATGATCACGGCA GCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCTAAAGTCCTGCGAAC CATGTCGGATTCATGTATTCCTCGCGCCCCCCGCATGTCTTCTTCAGAGC CCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTTCTTTGCCCCCTCCT TCGGTGAAGAACGGCGGACACCTTGTCATGAACACTGAGAAGTATGCCGG AGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAGGGAGCGTATGGGGT CGCTGGCAACTAGTTTAATGCATTTTACGGCGACTTCATGCCCTAGCTCT GTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTCGAATACGATGAAGA GACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGAACGGGAGGGAGGCG CTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCTTGACGGCGCTTTCT CTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCAGGAGGAGCAGGGGC TGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGGTGTATTGACCGGCG TCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGCCTGCTATGCAACTC CCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGGTCGGATATGGCGAC GACGAGGCACATTCCTGCCCACGCACACGGAGGGAGGAAAGATGGAGACA CCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGGCCGCGACGACGGCA TCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGAGATGAGGACGTCAC CAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTCCTCGTCCTCGTCCC AGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAGCTGTGGGCTCGCCG TCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAGGAGCTCAACCTTAA TCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGATTATAATGATAGCTG AGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTGGGATGAGAGGCTCC ACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTTTTGCGAAGGGAGAA ATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAATATGTAGAGAGCTAG GGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGGCTGTAGCTTTGGGT GGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTGTGTACCATGCAGAG AGAGCAGGAACAATGGCGATGATGAAATGACAGGGAGAGAGGGAGGAGAA GAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCTTCCACCTTTTTGAT TTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGATGCGGCCGCCGCCCT GTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCCTCACGTGAAGATGC GGTGCCATCCATACCATCATTACCTCTGCTACCATCAGTTAGTATTTGGT ATAGCAAAAATACACCATGACTGATAAGAAGGGAGATAGAGAAAGGTCGA GAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTGGTCCTGCAAGCAAA CAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTACATTTAATAGTCGA TTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAGGAGGGGCAGTGAAT ACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGCAGCAGGTCTATGAA AAGACAATGTCGGAGCATTTTTCCACATATACTAACCTTGTTTGATCGTC TAAATGTTCTAATATTTCACTCTTAGGATGGGAAGAAGTGCGCACGCAAG TCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAGCGGGAATGTAGGGG CGTGTGTTTGTGTTTTTGTGTGTTCTCGGTGGACGTTTTACCGTGCATTA TCCTCTGGTTGAGAGCCGGAGCAAGACTTATCACAAGCGAGCACCCACCA ATACGTATAGAACGACAAAGGAGGGTGTAAAGCTAATGCAATTCTCTTAT TGAGAAAAATAGTGCACTAAATTGTGTCCATTGCCTAAACCACAACAATA TTGAACCAACACAACTAGAAGCCAAGTTGTCGAGAAGAAAAGATACAAGA GAAAAGGGAAATAGACAGATGAAGAAACAAAGTTATTGACGAGAAAACA back to topprotein sequence of NO02G03660.1 >NO02G03660.1-protein ID=NO02G03660.1-protein|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp MKHAHSPVVPSLDLLEELPAPQHPIVEVVPPCPLMLIRRSGIASQPISMG DDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHK LSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVV TGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIE ENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPA HAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPA ASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELNLNH* back to topmRNA from alignment at chr2:981666..985264- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3599bp|location=Sequence derived from alignment at chr2:981666..985264- (Nannochloropsis oceanica) GGAGAAGGAGGAGGAATGGAGGGGGGGAGATGGGATTTCACGTGCCGGCC
ATCCGAGAAAACCTGTAAACACTCCATATCTCGAGATGGCAATGGGGCAC
GCAACATCCTGCGGGTGTATGAGAGTGAGGTCCGTGGAGAAGATCGTCCA
CATGAGCTCCGGTATGACCAACCGCGGCAGGTGGTGCAGACGCTGTATAA
GTTGTCTCCCCTCTGACCTCCTCTTTTTTTCCCCTCCTCCTAGCCCTGTA
TGGGCCATCGGAGGACTCATGCTGGTGCAAAACCTGTTAAAGCCATTTAA
AACTCGGCAAAATAAGGGGAGAATAAAATTTTGTTGGTAATAAGGCTTTC
CGTCGAGTGTTATCCTAAGAGGAGGCATTCGTCTGTGAGGCTTTGTGTTT
GCATTTGTCTGCAGATAGTTTGCACGCGATAATTTGGATTGTAGGAAACT
ACGGAAACTACACTACACTGTGATCTTGATCTTGCCTTGCATTTTGTCCC
GCACTGCAAACGAACACACTCTTGTCGCACTCACACCCGCGCACAGAAAG
ACAATGACCAGACATGTATTCTATTTGGAGTGCGAATCGTACCCTTCCGT
AATCTCGCCGGGCGCAAGTAGAGCAAACGTTCATTATCGCTCCGAGTCCG
GCCTCCAAGTCGTGCAGTTGTTTCTCTTATTTGCTTCTAACCACGGCTCC
CCACCCCCAACCCACCTCCCACTCGCCAACACCAACACAGCGCCCCAGGC
ACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCGTTTTGCATCCTTTC
CACGAGCATCATCAAGAACACCAGCAGCGTACACATGTGCCGGCGGCACC
AGAAAATCTATTCGTGACACCGGCTCTGCACATAGACAGTAGAAGCAGCA
GTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGTTCGTGATAAAGCGC
TGACAGCTTTAAGCAAGAAACATAATCTCTATTCAAATCAAGCAGCGCAG
CACAACCAACCATCATCAACCGAGCCTTATATTCTGTCGGAGGTGACATT
ATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGCGCTTCACAGAGCTC
TTACACGCAATATATCTTACGGCGCTGTCATCACTGTTGCTCCATTGAGC
AACCTTCCTCCGAAAAGTAATGAAACACGCGCATTCGCCTGTCGTCCCCT
CTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAACATCCAATTGTTGAA
GTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGGTCCGGGATTGCCTC
TCAGCCGATTAGCATGGGTGACGACAACAACAATGATAACAACATCATCA
GCCTGGGGGAGATGGGCCATGACACGCCCTCGACAACCATGATCACGGCA
GCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCTAAAGTCCTGCGAAC
CATGTCGGATTCATGTATTCCTCGCGCCCCCCGCATGTCTTCTTCAGAGC
CCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTTCTTTGCCCCCTCCT
TCGGTGAAGAACGGCGGACACCTTGTCATGAACACTGAGAAGTATGCCGG
AGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAGGGAGCGTATGGGGT
CGCTGGCAACTAGTTTAATGCATTTTACGGCGACTTCATGCCCTAGCTCT
GTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTCGAATACGATGAAGA
GACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGAACGGGAGGGAGGCG
CTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCTTGACGGCGCTTTCT
CTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCAGGAGGAGCAGGGGC
TGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGGTGTATTGACCGGCG
TCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGCCTGCTATGCAACTC
CCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGGTCGGATATGGCGAC
GACGAGGCACATTCCTGCCCACGCACACGGAGGGAGGAAAGATGGAGACA
CCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGGCCGCGACGACGGCA
TCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGAGATGAGGACGTCAC
CAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTCCTCGTCCTCGTCCC
AGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAGCTGTGGGCTCGCCG
TCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAGGAGCTCAACCTTAA
TCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGATTATAATGATAGCTG
AGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTGGGATGAGAGGCTCC
ACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTTTTGCGAAGGGAGAA
ATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAATATGTAGAGAGCTAG
GGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGGCTGTAGCTTTGGGT
GGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTGTGTACCATGCAGAG
AGAGCAGGAACAATGGCGATGATGAAATGACAGGGAGAGAGGGAGGAGAA
GAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCTTCCACCTTTTTGAT
TTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGATGCGGCCGCCGCCCT
GTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCCTCACGTGAAGATGC
GGTGCCATCCATACCATCATTACCTCTGCTACCATCAGTTAGTATTTGGT
ATAGCAAAAATACACCATGACTGATAAGAAGGGAGATAGAGAAAGGTCGA
GAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTGGTCCTGCAAGCAAA
CAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTACATTTAATAGTCGA
TTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAGGAGGGGCAGTGAAT
ACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGCAGCAGGTCTATGAA
AAGACAATGTCGGAGCATTTTTCCACATATACTAACCTTGTTTGATCGTC
TAAATGTTCTAATATTTCACTCTTAGGATGGGAAGAAGTGCGCACGCAAG
TCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAGCGGGAATGTAGGGG
CGTGTGTTTGTGTTTTTGTGTGTTCTCGGTGGACGTTTTACCGTGCATTA
TCCTCTGGTTGAGAGCCGGAGCAAGACTTATCACAAGCGAGCACCCACCA
ATACGTATAGAACGACAAAGGAGGGTGTAAAGCTAATGCAATTCTCTTAT
TGAGAAAAATAGTGCACTAAATTGTGTCCATTGCCTAAACCACAACAATA
TTGAACCAACACAACTAGAAGCCAAGTTGTCGAGAAGAAAAGATACAAGA
GAAAAGGGAAATAGACAGATGAAGAAACAAAGTTATTGACGAGAAAACA back to topCoding sequence (CDS) from alignment at chr2:981666..985264- >NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr2:981666..985264- (Nannochloropsis oceanica) ATGAAACACGCGCATTCGCCTGTCGTCCCCTCTCTTGACCTGCTCGAGGA GCTACCGGCGCCACAACATCCAATTGTTGAAGTGGTTCCACCCTGTCCTT TGATGCTCATCCGGCGGTCCGGGATTGCCTCTCAGCCGATTAGCATGGGT GACGACAACAACAATGATAACAACATCATCAGCCTGGGGGAGATGGGCCA TGACACGCCCTCGACAACCATGATCACGGCAGCAGCAACAGCAGCAGTGG CGGGCCTTGGCTATCCTAAAGTCCTGCGAACCATGTCGGATTCATGTATT CCTCGCGCCCCCCGCATGTCTTCTTCAGAGCCCAACCCTCTCTTCTTGGA AAGGATCCCCCAACTTTCTTTGCCCCCTCCTTCGGTGAAGAACGGCGGAC ACCTTGTCATGAACACTGAGAAGTATGCCGGAGAAAAAGGAGGGCACAAA TTGTCCTCATCCCTTAGGGAGCGTATGGGGTCGCTGGCAACTAGTTTAAT GCATTTTACGGCGACTTCATGCCCTAGCTCTGTGGGCGATACCGCTCCAG TTGGTGAGTGGCAAGTCGAATACGATGAAGAGACACGGCCCACGGTGGTG ACCGGTCTCCTGGGCGAACGGGAGGGAGGCGCTGCCAAGGCCAAGGTGGA AGTATCGTCGGCATCCTTGACGGCGCTTTCTCTGTTGATTAACAAGGCCT TTTCTAAAGCAGAAGCAGGAGGAGCAGGGGCTGGAACAGCAGGCATTGAG GAGAATGGTCGAAATGGTGTATTGACCGGCGTCCGTTTGGATGGCCCATC GCTGTCGACCTCCTTGCCTGCTATGCAACTCCCGCCGCCTGCTCTGGCTG TCCATACCATAGCAAGGTCGGATATGGCGACGACGAGGCACATTCCTGCC CACGCACACGGAGGGAGGAAAGATGGAGACACCCCTTTCTCGTTTTCGGC TTTCACTAACTCGACGGCCGCGACGACGGCATCTTCTGTCTCTTCTGCTA GTGACGGGCTGGGGGGAGATGAGGACGTCACCAGCGCTGTGTCCCCTGCC GCCTCTGCCTTGTCGTCCTCGTCCTCGTCCCAGGCCTCGTATGGGGAGGT GGAGGAAGAGGAGGAAGCTGTGGGCTCGCCGTCGGCAGATGCGACGATGG GGCCCTTCATGCTGGAGGAGCTCAACCTTAATCACTAG back to top
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