NO02G03660.1, NO02G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03660.1
Unique NameNO02G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3599
Alignment locationchr2:981666..985264 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:981666..985264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G03660.1 vs.
Match: EWM30269.1 (hypothetical protein Naga_100003g113 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 2.400e-29
Identity = 140/373 (37.53%), Postives = 180/373 (48.26%), Query Frame = 0
Query:   21 PQHPIVEVVPPCPLMLIRRSGIASQPISMGDDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI-PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHKLSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVVTGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIEENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPAHAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPAASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELN 393
            PQ  + +    CPL ++R S   SQ IS      +        +    +PS  +  A  + A   +  P + RT SDSCI P APRMSSSEPNPLFLE +P L+LPPPSV +G    +  ++Y   +    LSSS+RERMG+LA     F + S   +VG    VG   ++ +        T  L   EG   K+    +S S   LS+L NK  + + A   G     ++  G               S  LPAMQ        HT  +  +A      A A G     + P      T STAATTASSV S  DGL   EDV S +SPA S +SS S SQAS    E EE+A   PSADA +GPF LEEL+
Sbjct:   18 PQQQVPDKRLSCPLTILRLSQTVSQTISARYIWESKGGYCR-DKRKTSSPSCAVNVAHVSPAPVEVTRPAITRTFSDSCITPSAPRMSSSEPNPLFLESLPHLTLPPPSVDDGDARSIGGDRYNDRRA---LSSSMRERMGTLAGGFKLFASPSSSLTVG----VGAAGLQAESTQGSQAHTSFL---EGLTEKSP---TSRSSMVLSILANKTGAGSVAKKDGLCAPSVQHTGH--------------SAPLPAMQGRTLVEVAHTTIKGPVAEANIGDAFAKGVM---EGPIVCHGVTPSTAATTASSV-SILDGLKEVEDVFSTISPARSIVSSLSGSQASQNMEEGEEDASEPPSADADVGPFELEELH 358          
The following BLAST results are available for this feature:
BLAST of NO02G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30269.12.400e-2937.53hypothetical protein Naga_100003g113 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03660NO02G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03660.1NO02G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03660.1.cds1NO02G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3599bp
GGAGAAGGAGGAGGAATGGAGGGGGGGAGATGGGATTTCACGTGCCGGCC
ATCCGAGAAAACCTGTAAACACTCCATATCTCGAGATGGCAATGGGGCAC
GCAACATCCTGCGGGTGTATGAGAGTGAGGTCCGTGGAGAAGATCGTCCA
CATGAGCTCCGGTATGACCAACCGCGGCAGGTGGTGCAGACGCTGTATAA
GTTGTCTCCCCTCTGACCTCCTCTTTTTTTCCCCTCCTCCTAGCCCTGTA
TGGGCCATCGGAGGACTCATGCTGGTGCAAAACCTGTTAAAGCCATTTAA
AACTCGGCAAAATAAGGGGAGAATAAAATTTTGTTGGTAATAAGGCTTTC
CGTCGAGTGTTATCCTAAGAGGAGGCATTCGTCTGTGAGGCTTTGTGTTT
GCATTTGTCTGCAGATAGTTTGCACGCGATAATTTGGATTGTAGGAAACT
ACGGAAACTACACTACACTGTGATCTTGATCTTGCCTTGCATTTTGTCCC
GCACTGCAAACGAACACACTCTTGTCGCACTCACACCCGCGCACAGAAAG
ACAATGACCAGACATGTATTCTATTTGGAGTGCGAATCGTACCCTTCCGT
AATCTCGCCGGGCGCAAGTAGAGCAAACGTTCATTATCGCTCCGAGTCCG
GCCTCCAAGTCGTGCAGTTGTTTCTCTTATTTGCTTCTAACCACGGCTCC
CCACCCCCAACCCACCTCCCACTCGCCAACACCAACACAGCGCCCCAGGC
ACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCGTTTTGCATCCTTTC
CACGAGCATCATCAAGAACACCAGCAGCGTACACATGTGCCGGCGGCACC
AGAAAATCTATTCGTGACACCGGCTCTGCACATAGACAGTAGAAGCAGCA
GTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGTTCGTGATAAAGCGC
TGACAGCTTTAAGCAAGAAACATAATCTCTATTCAAATCAAGCAGCGCAG
CACAACCAACCATCATCAACCGAGCCTTATATTCTGTCGGAGGTGACATT
ATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGCGCTTCACAGAGCTC
TTACACGCAATATATCTTACGGCGCTGTCATCACTGTTGCTCCATTGAGC
AACCTTCCTCCGAAAAGTAATGAAACACGCGCATTCGCCTGTCGTCCCCT
CTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAACATCCAATTGTTGAA
GTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGGTCCGGGATTGCCTC
TCAGCCGATTAGCATGGGTGACGACAACAACAATGATAACAACATCATCA
GCCTGGGGGAGATGGGCCATGACACGCCCTCGACAACCATGATCACGGCA
GCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCTAAAGTCCTGCGAAC
CATGTCGGATTCATGTATTCCTCGCGCCCCCCGCATGTCTTCTTCAGAGC
CCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTTCTTTGCCCCCTCCT
TCGGTGAAGAACGGCGGACACCTTGTCATGAACACTGAGAAGTATGCCGG
AGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAGGGAGCGTATGGGGT
CGCTGGCAACTAGTTTAATGCATTTTACGGCGACTTCATGCCCTAGCTCT
GTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTCGAATACGATGAAGA
GACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGAACGGGAGGGAGGCG
CTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCTTGACGGCGCTTTCT
CTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCAGGAGGAGCAGGGGC
TGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGGTGTATTGACCGGCG
TCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGCCTGCTATGCAACTC
CCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGGTCGGATATGGCGAC
GACGAGGCACATTCCTGCCCACGCACACGGAGGGAGGAAAGATGGAGACA
CCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGGCCGCGACGACGGCA
TCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGAGATGAGGACGTCAC
CAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTCCTCGTCCTCGTCCC
AGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAGCTGTGGGCTCGCCG
TCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAGGAGCTCAACCTTAA
TCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGATTATAATGATAGCTG
AGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTGGGATGAGAGGCTCC
ACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTTTTGCGAAGGGAGAA
ATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAATATGTAGAGAGCTAG
GGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGGCTGTAGCTTTGGGT
GGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTGTGTACCATGCAGAG
AGAGCAGGAACAATGGCGATGATGAAATGACAGGGAGAGAGGGAGGAGAA
GAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCTTCCACCTTTTTGAT
TTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGATGCGGCCGCCGCCCT
GTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCCTCACGTGAAGATGC
GGTGCCATCCATACCATCATTACCTCTGCTACCATCAGTTAGTATTTGGT
ATAGCAAAAATACACCATGACTGATAAGAAGGGAGATAGAGAAAGGTCGA
GAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTGGTCCTGCAAGCAAA
CAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTACATTTAATAGTCGA
TTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAGGAGGGGCAGTGAAT
ACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGCAGCAGGTCTATGAA
AAGACAATGTCGGAGCATTTTTCCACATATACTAACCTTGTTTGATCGTC
TAAATGTTCTAATATTTCACTCTTAGGATGGGAAGAAGTGCGCACGCAAG
TCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAGCGGGAATGTAGGGG
CGTGTGTTTGTGTTTTTGTGTGTTCTCGGTGGACGTTTTACCGTGCATTA
TCCTCTGGTTGAGAGCCGGAGCAAGACTTATCACAAGCGAGCACCCACCA
ATACGTATAGAACGACAAAGGAGGGTGTAAAGCTAATGCAATTCTCTTAT
TGAGAAAAATAGTGCACTAAATTGTGTCCATTGCCTAAACCACAACAATA
TTGAACCAACACAACTAGAAGCCAAGTTGTCGAGAAGAAAAGATACAAGA
GAAAAGGGAAATAGACAGATGAAGAAACAAAGTTATTGACGAGAAAACA
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protein sequence of NO02G03660.1

>NO02G03660.1-protein ID=NO02G03660.1-protein|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MKHAHSPVVPSLDLLEELPAPQHPIVEVVPPCPLMLIRRSGIASQPISMG
DDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI
PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHK
LSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVV
TGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIE
ENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPA
HAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPA
ASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELNLNH*
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mRNA from alignment at chr2:981666..985264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3599bp|location=Sequence derived from alignment at chr2:981666..985264- (Nannochloropsis oceanica)
GGAGAAGGAGGAGGAATGGAGGGGGGGAGATGGGATTTCACGTGCCGGCC ATCCGAGAAAACCTGTAAACACTCCATATCTCGAGATGGCAATGGGGCAC GCAACATCCTGCGGGTGTATGAGAGTGAGGTCCGTGGAGAAGATCGTCCA CATGAGCTCCGGTATGACCAACCGCGGCAGGTGGTGCAGACGCTGTATAA GTTGTCTCCCCTCTGACCTCCTCTTTTTTTCCCCTCCTCCTAGCCCTGTA TGGGCCATCGGAGGACTCATGCTGGTGCAAAACCTGTTAAAGCCATTTAA AACTCGGCAAAATAAGGGGAGAATAAAATTTTGTTGGTAATAAGGCTTTC CGTCGAGTGTTATCCTAAGAGGAGGCATTCGTCTGTGAGGCTTTGTGTTT GCATTTGTCTGCAGATAGTTTGCACGCGATAATTTGGATTGTAGGAAACT ACGGAAACTACACTACACTGTGATCTTGATCTTGCCTTGCATTTTGTCCC GCACTGCAAACGAACACACTCTTGTCGCACTCACACCCGCGCACAGAAAG ACAATGACCAGACATGTATTCTATTTGGAGTGCGAATCGTACCCTTCCGT AATCTCGCCGGGCGCAAGTAGAGCAAACGTTCATTATCGCTCCGAGTCCG GCCTCCAAGTCGTGCAGTTGTTTCTCTTATTTGCTTCTAACCACGGCTCC CCACCCCCAACCCACCTCCCACTCGCCAACACCAACACAGCGCCCCAGGC ACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCGTTTTGCATCCTTTC CACGAGCATCATCAAGAACACCAGCAGCGTACACATGTGCCGGCGGCACC AGAAAATCTATTCGTGACACCGGCTCTGCACATAGACAGTAGAAGCAGCA GTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGTTCGTGATAAAGCGC TGACAGCTTTAAGCAAGAAACATAATCTCTATTCAAATCAAGCAGCGCAG CACAACCAACCATCATCAACCGAGCCTTATATTCTGTCGGAGGTGACATT ATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGCGCTTCACAGAGCTC TTACACGCAATATATCTTACGGCGCTGTCATCACTGTTGCTCCATTGAGC AACCTTCCTCCGAAAAGTAATGAAACACGCGCATTCGCCTGTCGTCCCCT CTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAACATCCAATTGTTGAA GTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGGTCCGGGATTGCCTC TCAGCCGATTAGCATGGGTGACGACAACAACAATGATAACAACATCATCA GCCTGGGGGAGATGGGCCATGACACGCCCTCGACAACCATGATCACGGCA GCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCTAAAGTCCTGCGAAC CATGTCGGATTCATGTATTCCTCGCGCCCCCCGCATGTCTTCTTCAGAGC CCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTTCTTTGCCCCCTCCT TCGGTGAAGAACGGCGGACACCTTGTCATGAACACTGAGAAGTATGCCGG AGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAGGGAGCGTATGGGGT CGCTGGCAACTAGTTTAATGCATTTTACGGCGACTTCATGCCCTAGCTCT GTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTCGAATACGATGAAGA GACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGAACGGGAGGGAGGCG CTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCTTGACGGCGCTTTCT CTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCAGGAGGAGCAGGGGC TGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGGTGTATTGACCGGCG TCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGCCTGCTATGCAACTC CCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGGTCGGATATGGCGAC GACGAGGCACATTCCTGCCCACGCACACGGAGGGAGGAAAGATGGAGACA CCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGGCCGCGACGACGGCA TCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGAGATGAGGACGTCAC CAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTCCTCGTCCTCGTCCC AGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAGCTGTGGGCTCGCCG TCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAGGAGCTCAACCTTAA TCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGATTATAATGATAGCTG AGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTGGGATGAGAGGCTCC ACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTTTTGCGAAGGGAGAA ATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAATATGTAGAGAGCTAG GGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGGCTGTAGCTTTGGGT GGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTGTGTACCATGCAGAG AGAGCAGGAACAATGGCGATGATGAAATGACAGGGAGAGAGGGAGGAGAA GAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCTTCCACCTTTTTGAT TTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGATGCGGCCGCCGCCCT GTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCCTCACGTGAAGATGC GGTGCCATCCATACCATCATTACCTCTGCTACCATCAGTTAGTATTTGGT ATAGCAAAAATACACCATGACTGATAAGAAGGGAGATAGAGAAAGGTCGA GAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTGGTCCTGCAAGCAAA CAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTACATTTAATAGTCGA TTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAGGAGGGGCAGTGAAT ACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGCAGCAGGTCTATGAA AAGACAATGTCGGAGCATTTTTCCACATATACTAACCTTGTTTGATCGTC TAAATGTTCTAATATTTCACTCTTAGGATGGGAAGAAGTGCGCACGCAAG TCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAGCGGGAATGTAGGGG CGTGTGTTTGTGTTTTTGTGTGTTCTCGGTGGACGTTTTACCGTGCATTA TCCTCTGGTTGAGAGCCGGAGCAAGACTTATCACAAGCGAGCACCCACCA ATACGTATAGAACGACAAAGGAGGGTGTAAAGCTAATGCAATTCTCTTAT TGAGAAAAATAGTGCACTAAATTGTGTCCATTGCCTAAACCACAACAATA TTGAACCAACACAACTAGAAGCCAAGTTGTCGAGAAGAAAAGATACAAGA GAAAAGGGAAATAGACAGATGAAGAAACAAAGTTATTGACGAGAAAACA
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Coding sequence (CDS) from alignment at chr2:981666..985264-

>NO02G03660.1 ID=NO02G03660.1|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr2:981666..985264- (Nannochloropsis oceanica)
ATGAAACACGCGCATTCGCCTGTCGTCCCCTCTCTTGACCTGCTCGAGGA
GCTACCGGCGCCACAACATCCAATTGTTGAAGTGGTTCCACCCTGTCCTT
TGATGCTCATCCGGCGGTCCGGGATTGCCTCTCAGCCGATTAGCATGGGT
GACGACAACAACAATGATAACAACATCATCAGCCTGGGGGAGATGGGCCA
TGACACGCCCTCGACAACCATGATCACGGCAGCAGCAACAGCAGCAGTGG
CGGGCCTTGGCTATCCTAAAGTCCTGCGAACCATGTCGGATTCATGTATT
CCTCGCGCCCCCCGCATGTCTTCTTCAGAGCCCAACCCTCTCTTCTTGGA
AAGGATCCCCCAACTTTCTTTGCCCCCTCCTTCGGTGAAGAACGGCGGAC
ACCTTGTCATGAACACTGAGAAGTATGCCGGAGAAAAAGGAGGGCACAAA
TTGTCCTCATCCCTTAGGGAGCGTATGGGGTCGCTGGCAACTAGTTTAAT
GCATTTTACGGCGACTTCATGCCCTAGCTCTGTGGGCGATACCGCTCCAG
TTGGTGAGTGGCAAGTCGAATACGATGAAGAGACACGGCCCACGGTGGTG
ACCGGTCTCCTGGGCGAACGGGAGGGAGGCGCTGCCAAGGCCAAGGTGGA
AGTATCGTCGGCATCCTTGACGGCGCTTTCTCTGTTGATTAACAAGGCCT
TTTCTAAAGCAGAAGCAGGAGGAGCAGGGGCTGGAACAGCAGGCATTGAG
GAGAATGGTCGAAATGGTGTATTGACCGGCGTCCGTTTGGATGGCCCATC
GCTGTCGACCTCCTTGCCTGCTATGCAACTCCCGCCGCCTGCTCTGGCTG
TCCATACCATAGCAAGGTCGGATATGGCGACGACGAGGCACATTCCTGCC
CACGCACACGGAGGGAGGAAAGATGGAGACACCCCTTTCTCGTTTTCGGC
TTTCACTAACTCGACGGCCGCGACGACGGCATCTTCTGTCTCTTCTGCTA
GTGACGGGCTGGGGGGAGATGAGGACGTCACCAGCGCTGTGTCCCCTGCC
GCCTCTGCCTTGTCGTCCTCGTCCTCGTCCCAGGCCTCGTATGGGGAGGT
GGAGGAAGAGGAGGAAGCTGTGGGCTCGCCGTCGGCAGATGCGACGATGG
GGCCCTTCATGCTGGAGGAGCTCAACCTTAATCACTAG
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Synonyms
Publications