NO02G03470.1, NO02G03470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03470.1
Unique NameNO02G03470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr2:932008..933573 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:932008..933573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03470.1 vs.
Match: EWM30261.1 (imp dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 951.4 bits (2458), Expect = 1.100e-273
Identity = 478/521 (91.75%), Postives = 498/521 (95.59%), Query Frame = 0 
Query:    1 MNGAPLDPKTAKWEELVKLLPKGNGGYTATEVFEDVKGSVAYTYDDLILMPAHINFGVNDVVLESNFTRKIALKTPMASSPMDTVTEDKMAIMMALHGGIGVVHYNCTIEDQAEMVNKVKKYKNGFIHDPVVLGPDNTVGDVDAITAAKGFAGFPITENGKLGGKLVGMISRRDVDFVDDKDTKLSSLMVTDVVTAKDGVTLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANKQLLCGAAIGTRPNDRDRLVALVAAGVDVIIIDSSQGDSLFQYDMIHHIKTTFPAVQVVAGNVVTAHQAFNLIRAGADGLRVGMGSGSICTTQEVCAAGRAACSAIYHTSRLASMFGVPVIADGGIGSTGHIVKAFCVGASCVMMGSLLAGTEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFASGAVVKVAQGVSGAVTDRGSMARYIPYLTTGVRHGLQDLGSVSLADLHKRRDAGLLRFEVRSPAAQREGGVHGLHMHERKLFA 522
            MNG PLD KTAKWE++   LPKGNGGYTA EVFEDVKG  AYTYDDLILMP+HI+FGVN+V+LES FTR IALKTPMASSPMDTVTEDKMAIMMALHGGIGVVHYNCTI +QAEMVNKVKKYKNGFIHDP+VLGPDNTV DV+ ITAAKGFAGFPITENGKLGG+LVGMI+RRDVDFVDDKDTKLS LMVTDVVTAKDGVTLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANKQLLCGAAIGTRP+DRDRL ALVAAGVDVIIIDSSQGDS+FQY+MI HIKT FP VQVVAGNVVTA QAFNLI+AGADGLRVGMGSGSICTTQEVCAAGRAACSAIYHTSRLA MFGVPVIADGGIGSTGHIVKAF VGASCVMMGSLLAGTEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFAS AVVKVAQGVSGAVTDRGSM RYIPYLTTGVRHGLQDLG++SLADLHKRR++GLLRFEVRSPAAQREGGVHGLHMHERKLF+
Sbjct:    1 MNGTPLDVKTAKWEDVEMRLPKGNGGYTAMEVFEDVKGCTAYTYDDLILMPSHIDFGVNEVILESKFTRNIALKTPMASSPMDTVTEDKMAIMMALHGGIGVVHYNCTISEQAEMVNKVKKYKNGFIHDPIVLGPDNTVADVERITAAKGFAGFPITENGKLGGRLVGMIARRDVDFVDDKDTKLSKLMVTDVVTAKDGVTLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANKQLLCGAAIGTRPSDRDRLSALVAAGVDVIIIDSSQGDSIFQYEMISHIKTAFPDVQVVAGNVVTAQQAFNLIKAGADGLRVGMGSGSICTTQEVCAAGRAACSAIYHTSRLAGMFGVPVIADGGIGSTGHIVKAFSVGASCVMMGSLLAGTEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFASNAVVKVAQGVSGAVTDRGSMGRYIPYLTTGVRHGLQDLGTISLADLHKRRESGLLRFEVRSPAAQREGGVHGLHMHERKLFS 521
The following BLAST results are available for this feature:
BLAST of NO02G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30261.11.100e-27391.75imp dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03470NO02G03470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03470.1NO02G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03470.1.cds1NO02G03470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03470.1 ID=NO02G03470.1|Name=NO02G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
ATGAACGGCGCGCCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGT
CAAGCTGCTGCCCAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTG
AGGACGTGAAGGGCAGCGTTGCGTATACCTACGACGATTTGATTTTGATG
CCCGCACATATTAATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTT
CACACGCAAGATCGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACA
CGGTAACGGAGGACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATC
GGCGTGGTCCACTATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAA
CAAGGTGAAAAAGTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTG
GGCCTGACAACACCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGC
TTTGCGGGCTTCCCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGT
GGGGATGATCTCGCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGA
AGCTCTCTAGCCTTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTG
ACCCTCGAGCAAGCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCT
GCCCATTGTCAACGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCG
ACATTAAAAAGAGCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAG
CAGCTCCTTTGCGGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCG
TCTCGTTGCCCTCGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGT
CGCAGGGCGATTCTTTGTTTCAGTACGATATGATTCATCACATCAAAACG
ACTTTTCCGGCGGTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCA
AGCCTTTAACCTCATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGG
GCTCCGGTTCTATTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCG
GCATGCTCAGCTATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGT
GCCTGTTATTGCGGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGG
CCTTTTGCGTGGGCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGG
ACGGAGGAGGCTCCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAA
GCGGTACCGAGGAATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAA
AGCGTTATTTCGCTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGC
GGTGCAGTGACAGACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGAC
CACGGGTGTGCGTCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTG
ACCTCCACAAGCGACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCC
CCGGCGGCACAGCGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCG
TAAGCTGTTCGCATAA
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protein sequence of NO02G03470.1

>NO02G03470.1-protein ID=NO02G03470.1-protein|Name=NO02G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MNGAPLDPKTAKWEELVKLLPKGNGGYTATEVFEDVKGSVAYTYDDLILM
PAHINFGVNDVVLESNFTRKIALKTPMASSPMDTVTEDKMAIMMALHGGI
GVVHYNCTIEDQAEMVNKVKKYKNGFIHDPVVLGPDNTVGDVDAITAAKG
FAGFPITENGKLGGKLVGMISRRDVDFVDDKDTKLSSLMVTDVVTAKDGV
TLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANK
QLLCGAAIGTRPNDRDRLVALVAAGVDVIIIDSSQGDSLFQYDMIHHIKT
TFPAVQVVAGNVVTAHQAFNLIRAGADGLRVGMGSGSICTTQEVCAAGRA
ACSAIYHTSRLASMFGVPVIADGGIGSTGHIVKAFCVGASCVMMGSLLAG
TEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFASGAVVKVAQGVS
GAVTDRGSMARYIPYLTTGVRHGLQDLGSVSLADLHKRRDAGLLRFEVRS
PAAQREGGVHGLHMHERKLFA*
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mRNA from alignment at chr2:932008..933573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03470.1 ID=NO02G03470.1|Name=NO02G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at chr2:932008..933573- (Nannochloropsis oceanica)
ATGAACGGCGCGCCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGT
CAAGCTGCTGCCCAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTG
AGGACGTGAAGGGCAGCGTTGCGTATACCTACGACGATTTGATTTTGATG
CCCGCACATATTAATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTT
CACACGCAAGATCGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACA
CGGTAACGGAGGACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATC
GGCGTGGTCCACTATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAA
CAAGGTGAAAAAGTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTG
GGCCTGACAACACCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGC
TTTGCGGGCTTCCCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGT
GGGGATGATCTCGCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGA
AGCTCTCTAGCCTTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTG
ACCCTCGAGCAAGCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCT
GCCCATTGTCAACGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCG
ACATTAAAAAGAGCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAG
CAGCTCCTTTGCGGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCG
TCTCGTTGCCCTCGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGT
CGCAGGGCGATTCTTTGTTTCAGTACGATATGATTCATCACATCAAAACG
ACTTTTCCGGCGGTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCA
AGCCTTTAACCTCATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGG
GCTCCGGTTCTATTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCG
GCATGCTCAGCTATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGT
GCCTGTTATTGCGGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGG
CCTTTTGCGTGGGCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGG
ACGGAGGAGGCTCCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAA
GCGGTACCGAGGAATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAA
AGCGTTATTTCGCTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGC
GGTGCAGTGACAGACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGAC
CACGGGTGTGCGTCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTG
ACCTCCACAAGCGACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCC
CCGGCGGCACAGCGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCG
TAAGCTGTTCGCATAA
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Coding sequence (CDS) from alignment at chr2:932008..933573-

>NO02G03470.1 ID=NO02G03470.1|Name=NO02G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at chr2:932008..933573- (Nannochloropsis oceanica)
ATGAACGGCGCGCCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGT
CAAGCTGCTGCCCAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTG
AGGACGTGAAGGGCAGCGTTGCGTATACCTACGACGATTTGATTTTGATG
CCCGCACATATTAATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTT
CACACGCAAGATCGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACA
CGGTAACGGAGGACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATC
GGCGTGGTCCACTATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAA
CAAGGTGAAAAAGTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTG
GGCCTGACAACACCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGC
TTTGCGGGCTTCCCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGT
GGGGATGATCTCGCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGA
AGCTCTCTAGCCTTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTG
ACCCTCGAGCAAGCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCT
GCCCATTGTCAACGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCG
ACATTAAAAAGAGCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAG
CAGCTCCTTTGCGGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCG
TCTCGTTGCCCTCGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGT
CGCAGGGCGATTCTTTGTTTCAGTACGATATGATTCATCACATCAAAACG
ACTTTTCCGGCGGTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCA
AGCCTTTAACCTCATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGG
GCTCCGGTTCTATTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCG
GCATGCTCAGCTATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGT
GCCTGTTATTGCGGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGG
CCTTTTGCGTGGGCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGG
ACGGAGGAGGCTCCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAA
GCGGTACCGAGGAATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAA
AGCGTTATTTCGCTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGC
GGTGCAGTGACAGACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGAC
CACGGGTGTGCGTCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTG
ACCTCCACAAGCGACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCC
CCGGCGGCACAGCGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCG
TAAGCTGTTCGCATAA
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Synonyms
Publications